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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
At4g35610
<----
--------->
At4g35610
-------
--------->
TOE2(3)
------>
ZmHOX2a(2)
--------->
ATHB12
<------
ZmHOX2a(2)
<--------
HAHB4
--------->
ARR11(3)
<---------
ICU4
<---------
ARR14(2)
--------->
YAB1
--------->
ICU4
--------->
ATHB12
<---------
ARR11(3)
------
ZAT18
<---------
YAB1
<----------
DOF2
--------->
ARR14(2)
>
GLK1(1)
<---------
ATHB12
<---------
ARR11(3)
----------------->
AGL1
-
GLK1(1)
--------->
WOX13(1)
--------->
YAB1
--------->
REM1(1)
<---------
WOX13(1)
gcacatttataaacaaattcaattagtaatagagttctcatcattagcagctcatgttctacatctttgatttgaaaactaattgccaaaaacgatctgt
19381700
----------->
RAV1(1)
<------
ZmHOX2a(2)
<---------
ANAC58
<---------
ARR11(3)
--------->
At4g35610
--------->
AGP1
<---------
HSFC1(2)
<---------
ANAC58
--------->
ARR14(2)
--------->
HSFC1(2)
<---------
GLK1(2)
<---------
ARR14(2)
----
--------->
YAB1
--------->
At4g35610
<---------
ANAC46
--------->
ZAT6
--------
-----
MYB52(1)
<---------
At4g35610
----------->
RAV1(1)
<---------
ATHB12
--------->
YAB1
---->
GT1
---------->
DOF2
<---------
At4g35610
--------->
WOX13(1)
--------->
AHL20(2)
taattagaatgacaaagcttcttctgaatttcagcttctcccacaaattgcttatagacaattcaatcaaacactagatccaacaaaaaaaatcatcaaa
19381800
--------->
ANAC58
----------->
GT1
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR14(3)
--------->
ARR14(3)
<---------
ARR14(2)
--------->
ARR14(2)
-
<---------
ARR11(3)
<-
<---------
MYB46(3)
--------->
MYB52(1)
--------->
ARR11(3)
---
--------->
ANAC58
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
---
------>
DOF2
--------->
TOE1(2)
--------->
TOE1(3)
<---------
AHL20(2)
--------->
ANAC58
<--
->
YAB1
--------->
ANAC58
--------->
TOE1(2)
--------->
AHL20(2)
--------->
YAB1
----
atagcagagaagaacgaaaacgttggataatacataggaaccctaacagttgagaattttatgtaggatcttgtaattagaagcaaaatccaaaacgaat
19381900
------>
ZmHOX2a(2)
------>
MYB46(1)
--------->
MYB52(1)
------>
MYB83
--------->
TOE2(2)
<---------
ALFIN1
--------->
TOE1(2)
--------->
LBD16
------->
TEIL
--------->
DEAR3(1)
-------->
YAB1
<------
ZmHOX2a(2)
--------->
AtMYB61
<------
ZmHOX2a(1)
--------
YAB1
--------->
ARR11(3)
--------->
DEAR3(1)
<-----------
RAV1(2)
------>
AHL20(2)
<---------
ALFIN1
------>
ZmHOX2a(1)
------>
AHL20(1)
--------->
AtMYB61
--------->
TOE2(3)
-------
-------
AHL20(2)
--------->
MYB46(3)
<---------
MYB46(3)
--------------------->
WRI1
----->
YAB1
<---------
ARR11(3)
<---------
ALFIN1
<-------
TEIL
---------->
DOF2
<-----------
GT1
--
tataatgaaacttac
gatctcgaccaccgcgaacacctcccctcgttggatgatacat
cgaaaccctgaaagttgcaaccttgatttttcctcaggaggc
19382000
--------->
ATHB12
<
<---------
YAB1
<--
<---------
ARR11(3)
--------->
ARR11(3)
<---------
AHL20(2)
<---
--------->
ANAC46
--------->
CCA1(2)
--------->
AHL20(2)
----
--------->
ANAC58
<---------
ARR14(2)
*
TSS
--------->
AHL20(2)
--------
--------->
ANAC58
--------->
ARR14(2)
----------->
GT1
---------
---->
GT1
<----------
DOF2
------->
TEIL
>>>>>>>>>>>>>>>>>
LFY
<---------
DEAR3(1)
-------->
DOF2
<---------
WOX13(1)
<---------
GLK1(2)
<---------
ANAC46
--------->
MYB52(1)
-
taaaagccagaactttgattggatacgaatttctcagatttttggttccaat
ggagtttaaataaaaacaaaaatacaaaaaacaaactgaagacggtga
19382100
------->
MYC4
<-------
MYC4
------->
MYC2
<-------
MYC2
------->
MYC3
<-------
MYC3
-------->
ABF1
--------->
ANAC55(2)
<---------
TGA1a
<--------
ABF1
<---------
ANAC55(2)
=======================
bZIP_DOF
--------->
TGA1a
<---------
O2
----------->
HVH21
<-----------
HVH21
--------->
ALFIN1
<-------
MYC2
<-------
MYC4
<-------
MYC3
------->
MYC4
------->
MYC2
------->
MYC3
--------->
TGA1a
<---------
O2
<---------
ANAC58
<---------
YAB1
<--------
ABF1
<---------
ANAC46
<---------
ICU4
--------->
ANAC55(2)
--------->
YAB1
<---------
TGA1a
<---------
SPL7
---------
YAB1
--------->
O2
<---------
ANAC58
-------
ICU4
<---------
ANAC55(2)
*
TSS
<--
------
YAB1
================================
bZIP_DOF
----->
ICU4
<---------
ANAC46
--------->
ANAC58
->
At5g28300
<----------
DOF2
---------->
DOF2
--------->
O2
---------->
DOF2
-->
GT1
<----------
ID1
----------->
GT1
=================
bZIP_DOF
--------->
ANAC58
-------->
ICU4
<---------
TOE2(3)
<---------
TOE2(3)
==========================
bZIP_DOF
<------
ZmHOX2a(1)
ttattattatgggccaaataaggctttaggcccattagaggttaatagaaacaaaaacttgaaaagacacgtgtgacacgtgtcgtaagc
aaagaaggag
19382200
------>
MYB46(1)
<------
ZmHOX2a(1)
<---------
MYB111(1)
=======
<---------
MYB59
--------
----------->
RAV1(1)
<---------
MYB46(2)
---------
--------->
AtMYB61
-------->
P
--------->
ANAC46
<---------
ARR14(2)
----------->
HVH21
---------->
DOF2
<---------
ALFIN1
--------->
GLK1(2)
<---------
ZAT14
--------->
YAB1
------>
MYB83
--------->
ARR14(2)
--------->
ALFIN1
--------->
MYB46(3)
------>
MYB83
--------->
TOE1(3)
<---------
MYB46(3)
-------
ZAT14
--------->
MYB46(3)
------>
MYB46(1)
--------->
TOE2(3)
--------->
ALFIN1
agaagtggagagaagtgaccaccagacaattgtaaagcctacctaatccacaccgattcaattcaaaaccctaaactcaaaatccgtctcggtggaggaa
19382300
--------->
ARR14(2)
------>
MYB83
-------->
P
<--------
------>
MYB46(1)
--------->
MYB55(1)
<---------
MYB111(1)
<---------
MYB111(2)
--------->
MYB46(3)
------>
ZmHOX2a(2)
<---------
MYB55(2)
====================================
HOX2a_HOX2a
--------->
AtMYB61
<---------
ARR11(3)
<---------
ICU4
<-----------
GT1
<---------
MYB46(2)
=============================
HOX2a_HOX2a
--------->
YAB1
--------->
DAG2
--------->
DEAR3(1)
--->
GT1
--------->
ARR11(3)
<-------
TEIL
---------->
DOF2
--------->
YAB1
<---------
DAG2
-->
GT1
--------->
At4g35610
<---------
YAB1
------>
ZmHOX2a(1)
<----------
DOF2
<---------
ARR14(2)
aa
atggctgaagaagctcaagtagatcgttctaatggctctgattcatcatctcctcccataaagttacctcctttcatcaccaacctattcgcctttct
19382400
--------->
LBD16
<---------
ATERF1(2)
--------->
ATERF1(2)
--------->
DEAR3(2)
------>
MYB83
--------->
MYB52(1)
<----------
DOF2
------>
ZmHOX2a(1)
------>
MYB46(1)
<-----------
HVH21
----------->
RAV1(2)
-------->
P
--------->
ANAC46
------>
ZmHOX2a(1)
--------->
MYB55(1)
--------->
AtMYB61
<---------
ALFIN1
--------->
AtMYB61
--------->
TOE1(2)
--------->
AtMYB61
<---------
MYB111(1)
--------->
TOE2(2)
--------->
TOE2(3)
<---------
YAB1
<---------
MYB59
--------->
ARR14(2)
------>
MYB83
<---------
DAG2
--
DOF2
<---------
ATERF1(1)
------>
ZmHOX2a(1)
<---------
ARR14(2)
------>
MYB46(1)
tcaacctaagcctcctcctgctactattgatgccaatgctcctaaacctaccggcgagaaggaacctctgaaatcgacctacgagactgtcactttccct
19382500
<----------
CDC5
----------->
GT1
--------->
ZAT18
<------
MYB46(1)
--------->
DAG2
<------
MYB83
---------->
DOF2
--------->
At4g35610
<---------
ZAT2
--
--------->
MYB46(3)
<----------
CDC5
<---------
At4g35610
--------->
ANAC58
<---------
TOE2(3)
<------
ZmHOX2a(1)
--------->
At4g35610
--------->
ANAC58
--------->
YAB1
<---------
At4g35610
<-----------
RAV1(2)
--------->
ANAC46
<---------
ATHB12
--------->
ZAT2
------>
ZmHOX2a(1)
<--
--------->
ANAC46
--------->
WOX13(1)
<---------
ZAT2
<-----------
HVH21
---
tacaatccacccaaaagcgcagagccaatcaagtttgaggctgagcccagctctggcaggacttccaactctgtcatcctttggcag
gtgattttgttaa
19382600
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AGI:
At3g52220.1
Description:
similar to unnamed protein product [Vitis vinifera] (GB:CAO62409.1); contains domain PTHR14580 (PTHR14580)
Range:
from: 19380340
to: 19382052
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At3g52230.1
Description:
similar to unknown [Populus trichocarpa] (GB:ABK93315.1)
Range:
from: 19382191
to: 19383665
Orientation: Forward
Links:
TAIR
MIPS
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when using AthaMap.
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