Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                       <XXXXXXXXXXXXXXXXXXXXMIR161.1                                                  <---------At4g35610      --------------->AtSPL8                                                  --------->ZAT2           ------>ZmHOX2a(2)  <----------DOF2                                 <---------ZAT2           --------------->AtSPL3 -------DOF2                     -------->P       --------->At4g35610     --------->At4g35610 ------DAG2                     <-----------GT1  ------>NtERF2   <---------DAG2              -------- ---ALFIN1             <---------ANAC46   --------->ATHB12       <----------DOF2     <-----------GT1   ttttctttgaagctcgatggcagtctcgttgaagttaccagacttcattgccagctcgatgaagtcgctttttgtgatctgtacaatttacatccacaaa  19357200                                                                               ----------->HVH21                                                                              --------->At5g28300                                                                             ----------->GT1                                                                             <---------DEAR3(2)                                                                            <---------DEAR3(1)                                                                         <---------DEAR3(1)                                                                         <---------MYB46(3)                                                                        --------->ALFIN1                                                                      <---------ANAC46           ----                                                                     <---------MYB46(3)  --------->GLK1(1)                                                                    ------>ZmHOX2a(2)<------ZmHOX2a(1)                                                                    ========================HOX2a_HOX2a                                   <------NtERF2              <---------At4g35610   ----------->GT1                                 <---------ANAC46      --------->ARR11(3)--------->MYB55(2)  --------     --------->YAB1            <---------O2        <---------ICU4--------->ATHB12 <-----------RAV1(2) ->ANAC46        ---------->DOF2 --------->ALFIN1 --------->ICU4<---------YAB1<------NtERF2  <-------   acaacaatgagaagacagagaaagagagaagagaggtggggatggaagagacatgatgaccttgagatgatcgggtgggcggtaacaggagaaatcgaga  19357300                         --------->YAB1                         --------->ATHB12                           --------->ATHB12                         -------->HAHB4                       --------->ANAC58                        <---------YAB1                        --------->ANAC58                        --------->ICU4                       --------->GLK1(1)         <------ZmHOX2a(1) <---------WOX13(1)               ---------->DOF2 ------->GT1        <---------ARR11(3)            <---------ETT(2) --------->ICU4        ---------->DOF2 ->HSFB2a(2)        --------->ARR11(3)<------ZmHOX2a(1)--------->MYB52(1)         <---------HSFB2a(2) --HSFB2a(2) <------ZmHOX2a(1)     <------ZmHOX2a(1)  ---------->DOF2         --------->GLK1(1)   agaaaaacagaggaaggagtaagataatgatagatgaggaggatgaagaaggtagacaaagggaaagccaagattgggagaaatcgagaaacaaagatga  19357400                                    --------->TOE1(2)                                   <---------TGA1a                                   <---------ANAC46                                   <---------ANAC55(2)                                             <-                                   --------->TGA1a                                              <----                                   <---------ANAC58                                        --------->LBD16                                   <---------ANAC58                                    --------->ARR14(2)                                   --------->ANAC55(2)                     --------->ARR11(3)   -----                            ---------->DOF2                                <---------ARR11(3) <------ZmHOX2a(1)               <------ZmHOX2a(1)  <-------TEIL                    <---------ZAT2       <---------ARR14(2)            <------ZmHOX2a(1) --------->DAG2       ----------->GT1--------->ZAT2    --------->AHL20(2)    >>>>>>>>>TBF1           =================bZIP_DOF       ------->TEIL  <---------CCA1(2)<---------LBD16   agagaagaagaagaggaggaaggaagaaacaaaaggtacgtgagagagagagaaggtaaatgtatccaagcttgacatatctcaaattatatccgaggaa  19357500          <---------MYB52(1)      <---------ZAT18      --------->ZAT18   --------->RAP2.6(3)  <------ZmHOX2a(1)      <---------MYB59                 <---------DAG2                             < --------ICU4      <----------DOF2              <-----------RAV1(1)  --------->ZAT6             ----- -----GLK1(1)  ----------->HVH21              <----------DOF2        <-----------GT1         *TSS   - ---->GLK1(1)--------->ANAC55(2)       <-----------GT1   <----------DOF2                 <---------AtMYB61   atcaggactgcccttaggtgactttgacttaactccaccattcaccatctttgttgcctctttttccattttcactaagcatcaaaaccttgtggtctct  19357600                                                                          <------NtERF2           <--                                                                        <---------ANAC46        <----               --------->ICU4                                           <---------ANAC58        <----            <---------AHL20(2)                                          <---------ANAC58       <-----        --------->AHL20(2)                           <---------AtLEC2  <---------LBD16         <-----     --------->YAB1                              --------->At4g35610 --------->ALFIN1         <------    <---------AHL20(2)                        <----------DOF2 <-------GAMYB                  <-------GAMYB --------->AHL20(2)                        <----------DOF2 <---------DOF5.7(2)  <---------At4g35610 < ---------ATHB12                          <---------ANAC58 <---------At5g28300  --------->At4g35610 - ------->CBF--------->AHL20(2)            <---------ANAC58<-----------GT1--------->LBD16     <------- -------->AHL20(2)<---------YAB1  ---------->DOF2<---------At4g35610 ----------->HVH21  --------->WOX13(1)   caataaataatcaaataaatatgagtcagtgtaacagaaagatggcttctttgctgcatgttaccgttgaagtggcgggttttgctgcatcattcagttg  19357700   <---------REM1(1)   ----------->GT1 ----------->GT1 <---------ANAC46                                                                        --------->AHL20(2) -------ANAC46                      <---------YAB1                                --------->YAB1 --MYB46(1)                       <-----------GT1                                 --------->ATHB51 --MYB83                         --------->ICU4                                  --------->ICU4 ----MYB46(3)               --------->ANAC55(2)                                  <---------ATHB12 ----AtMYB61                ----------->GT1                                  <---------ATHB12 ---MYB52(1)               <---------TOE1(3)                                --------->AtLEC2 ---------AtMYB61          <---------TOE2(3)         --------->YAB1         --------->ANAC46 -------->ALFIN1          <-----------RAV1(2)       <---------ATHB12        --------->ANAC58 --At4g35610             <-------TEIL    <---------AHL20(2)                 --------->ANAC58 <-------TEIL   gtgtggtgtaactaaaccaatgctcggttcaggtaattaccatttttttgaccaatgagaagtaatctctcattctccaagcaataatcgataaattcat  19357800              --------->At4g35610             <---------GLK1(1)            <---------ICU4                    --------->GLK1(1)         --------->WOX13(1)               --------->YAB1                                        -----     --------->GLK1(1)               --------->ARR11(3)                    <---------YAB1   ---------     <---------GLK1(1)         <---------HSFB2a(2)                 <---------WOX13(1)    ============  ------->GAMYB    <-------GAMYB     <---------ARR11(3)          --------->ATHB12        <-----------   acaactgaaatccatcatctccgttgaaatgttcaagaagataatcagaattctgatgtttcatccctgattggactatatttgactcaaaccattatat  19357900                                                                                                  ---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                <----                                                          ------>MYB46(1)                       -----                                                          -------->P                            <----                                                          ------>MYB83                      ------>MYB46(1)  --------->TOE1(3)                               <---------At4g35610                       ------>MYB83  --------->TOE2(3)                      ----------------->AGL3                            --------->MYB52(1)  <---------MYB59            <---------At4g35610  --------->At4g35610                     ------->GAMYB ---->ANAC55(2)            --------->ANAC46      <---------TOE2(3)         <----------ID1--------->MYB46(3) >AHL20(2)            <---------------AtSPL8     <---------TOE1(3)    --------->YAB1     <---------MYB52(2) ==========================================================MADS_MADS<---------TOE2(3)  <-----------GT1 ----AGL15            <---------------AtSPL3    <-----------GT1--------->ZAT6   ---------->DOF2 -----   gtaacctaaacattcaacacaaaaattgtacagcacatttcaaaccatattaagcttaccaactctcactaatgaaaactacaaaagtttaaccaacgga  19358000           -------->ATHB1           --------->YAB1           <--------HAHB4           --------->ATHB51       --------->AHL20(2)      <---------ATHB12 --->ZmHOX2a(2) ------GLK1(1)                                            --------->ARR14(2) ----->GLK1(1)                                      <---------GLK1(1) ---ZmHOX2a(2)                                     <---------ARR11(3) -->TEIL   <---------ICU4                      ---------->DOF2 -------ARR10<---------YAB1                  <---------ANAC55(2)                 <---------ANAC46 -----AGP1--------->ICU4                     --------->ANAC58                    <---------ANAC58 -----ARR14(2)                               --------->ANAC58            --------->ARR14(2) ---->ARR11(3)                               --------->ANAC46            <---------ARR14(2)         < -----ARR11(3)                           <-----------HVH21<---------ARR14(2)     <---------ANAC58  <- ---->ARR14(2)                    ---------->DOF2  --------->ARR11(3)   <------ZmHOX2a(1) -----------   tctctacaatgaattattactctgaccaaaacttcacaaaggctgtcacgaaagatttcagaactgccaagagaggatttgtttcttgtcttcccatatt  19358100  Previous    Next  AGI:  At3g52160.1    Description:  beta-ketoacyl-CoA synthase family protein. Identical to 3-ketoacyl-CoA synthase 15 (KCS15) [Arabidopsis Thaliana] (GB:Q9SUY9;GB:Q8LFQ2); similar to FDH (FIDDLEHEAD), acyltransferase [Arabidopsis thaliana] (TAIR:AT2G26250.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45491.1); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392); contains InterPro domain Thiolase-like; (InterPro:IPR016039); contains InterPro domain FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601); contains InterPro domain Thiolase-like, subgroup; (InterPro:IPR016038) Range:  from: 19355950    to: 19357593    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g52170.1    Description:  DNA binding. similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G58210.4); similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G58210.1); similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G58210.2); similar to plastid DNA-binding protein [Brassica napus] (GB:BAD90706.1) Range:  from: 19357777    to: 19360491    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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