Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                                <----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                           --------->YAB1                                                                                       --------->ICU4                                                                                     --------->YAB1                                                     --------->ANAC58               <---------YAB1                                 --------->ZAT14     --------->ANAC46           <------MYB46(1)<-----                       <---------ZAT6     ----------->HVH21    --------->REM1(1)<------MYB83   <-----                --------->HSFB2a(2)       <---------ATHB12--------->AtLEC2    <--------P<---------ICU4 ----YAB1       <---------HSFB2a(2)--------->GLK1(1) --------->ANAC58         --------->ALFIN1 ------   gttgtggtaatcttgtttctaggcagtgtaaacagagaactccaatgacatgaacaagtcatgctacatccaattcagaggtagggatgataatgaagat  19354300            <-----------GT1          <---------AHL20(2)                                                      <----------DOF2  --------->ANAC58                                                              --------->At4g35610  --------->ANAC58                                                            <---------ZAT18 -->ZmHOX2a(2)                                                           <---------ANAC58 --ZmHOX2a(2)                                                            <---------ANAC46   --------- --->ARR14(3)                                                            <---------ANAC58 --------->ANAC58 --->ARR14(2)                    --------->TOE2(3) ----------->GT1    ----------->HVH21   --------->ANAC58 ----ARR11(3)                   ===================================================================== ----ARR14(3)                   ----------------->AGL3              <---------ANAC58  <-----------HVH21 ----ARR14(2)                <----------DOF2--------->YAB1          <---------ANAC58<---------AtMYB61 --->ARR11(3)            <-----------GT1  ------->TEIL          <---------ANAC46<---------At4g35610 -   ccccaagctaaatttatctccaccaagtttcctttccataaatgtatcatacaatgtaaaattgctacttgtgtgacttgtgagctttggtcactcaaaa  19354400                                    <---------ANAC58                        ------>ZmHOX2a(1)                                    <---------ANAC46          --------->ARR14(2) --------------->AGL15              <---------ANAC58          <---------ARR14(2) <---------------AGL15           <---------MYB52(1)     <---------WOX13(1) <---------ANAC58 >YAB1                          <-------GAMYB          <---------ANAC58    <---------ANAC58       <-- ================MADS_MADS     <-----------RAV1(1)     <---------ANAC58------->GAMYB        <-------- -------->TOE2(3)   <-----------RAV1(1)               --------->ATHB12--------->MYB46(3)<------ZmHOX2a(1)   tttcttaatttagtgtctacttctgtagctcttctgttgcttgttatgttgtaagttgattgcaaatttgcaacggtccttgttcgatgaggaagaacca  19354500                                                                 --------->ARR14(2)                                                                 <---------ARR14(2)                     --------->ATHB12                        ------>MYB46(1)        --------->ANAC58                                    --------->MYB52(1)        --------->ANAC58                                   --------->AtMYB61    --------->HSFC1(1)                             --------->ARR11(3)    <---------HSFC1(1)          <---------ANAC58   --------->GLK1(2)    --------->HSFB2a(2)         <---------ANAC58   <---------ARR11(3)    <---------HSFB2a(2)      <----------DOF2      <---------GLK1(2)  ------>ZmHOX2a(1) -------ARR11(3)    <---------YAB1<---------MYB52(1)      --------->MYB46(3)               <---------DAG2 -ARR14(2)      <---------GLK1(2)<-------GAMYB --------->YAB1------>MYB83                  <---------   gagcttcgagaagcacttgattctcattggactttcgttggcaaactgatcaaaatctcgaccaacggttcctcagaggtctcaagttcaaaactttttc  19354600                                                --------->AHL20(2)                                                <---------AHL20(2)                                              <----------DOF2                                              --------->TOE2(3)                                          <---------CCA1(2)                                        ------>ZmHOX2a(2)                                        ================================HOX2a_HOX2a                                       <------ZmHOX2a(2)                                       =================================HOX2a_HOX2a                                      <---------ARR14(2)                                      --------->ARR14(2) --------->ANAC46              <----------DOF2                                      <---------ARR11(3)<---------At5g28300---------->DOF2 <---------                  --------->TOE2(3)   --------->ARR11(3)<---------LBD16  *TSS         <---------DAG2 -DOF2  ------>ZmHOX2a(1)--------->MYB46(3) <---------YAB1       <------ZmHOX2a(1) <-----------GT1   tctctgggtccttacttctaccttggaacaactgagtaccgatcttatctttaaatttcacggcgaaggattagaaataaagaaattacctttctttaac  19354700                                                                                               <-----                                                                                          <---------ALFIN1                                                                                       <---------TCP20                                                                                     <---------ATERF1(1)                                                                                    --------->ANAC46                                                                                    --------->ANAC58                     --------->ZAT2                         --------->ARR14(2)      --------->ANAC58                 <---------ANAC58                    <-----------HVH21     <---------ANAC58    <-----                 <---------ANAC58                   --------->ANAC46       <---------ANAC58    <-----      --------->ANAC46               ------>ZmHOX2a(1)      <---------ARR14(2)     <---------LBD16---      --------->ANAC58<---------ANAC58          <---------At4g35610       <---------ICU4------>NtERF2 -DOF2--------->ANAC58<---------ANAC58  <----------DOF2 ----------------->AGL1    <---------ALFIN1<--   taaaaatcaagccagagatgcttagcttgcagtgtcttcctcctttcttcatctccgtcccaaatcggagcaccaattcttgctccacggctccacttcg  19354800                                                                                         <-----------                                                                                      <----------DOF2                                                                                     ================                                                                            ================HOX2a_HOX2a                                                                            --------->LBD16                          --------->DEAR3(1)                               <---------LBD16                          <---------ETT(2)                              <---------ARR14(2)         <---------bZIP60(2)  --------->TOE2(3)                --------->ANAC58      ------>ZmHOX2a(2)   <---------WRKY12       --------->WRKY38(1)               ----------->HVH21      <-----------ARR10 <-----------HVH21        --------->WRKY12                  <---------MYB52(1)     --------->ARR11(3) ----ANAC58             --------->LBD16                    <-----------HVH21------>ZmHOX2a(1) ----ANAC46       <----------DOF2                          <-----------TGA1<---------ANAC46 ----ANAC58<---------ZAT14--------->ETT(2)           ------>ZmHOX2a(1)  --------->ARR14(2) ------>SPL7    <---------At4g35610         ------>NtERF2 --------->ANAC46 --------->TOE1(2) -------ZAT18<---------At4g35610           --------->DEAR3(1)  --------->ANAC58    <---------ARR11(3)   tgcggtcagtgacttcgctgcttctccgtcgacctcaatctctcgccgtcttatccttctccgtcacgctcacagttcctgggatgatctttccctcaga  19354900                                            --------->TOE2(3)               <----------DOF2              <----------DOF2                                  ------>ZmHOX2a(2)      <---------GLK1(2)                  <---------ARR11(1)                                <---------ARR11(3)    <---------YAB1                       --------->ARR11(3)                              <---------YAB1 ------AGL1  ------>ZmHOX2a(1)----------->GT1                                 <---------TOE2(3) ===================HOX2a_HOX2a         <---------CCA1(2)<----------DOF2      <---------TOE1(3)   ---   ggtactctgattctcctctttctcgctcaaaatcgaaaaatcaaatctttaatgtctctctttctctctgtctgtgtcttaacgatagaccatgatcgtc  19355000                       --------->At4g35610                        --------->HSFB2a(2)                     <---------GLK1(2)                        <---------ANAC58                     <---------ARR14(2)                   <--------P<---------ALFIN1                    --------->At4g35610                   <---------MYB52(1)                    <---------At4g35610  <---------ARR14(2) <------MYB83              ---------->DOF2      --------->At4g35610   <-------GAMYB           --------->LBD16   ---------->DOF2      ------>ZmHOX2a(1)--------->LBD16         <---------LBD16  ------>NtERF2  --------->ARR14(2) <------MYB46(1) --->ZmHOX2a(1)   <---------------------WRI1 ------>ZmHOX2a(1)<---------ANAC58        <--------P   ctctaagtaaaaccggagaagcagatgctgccaaagtagctcaaatcctctcctcactcggttggcttccccaacttattctctcaaggtaagttccttc  19355100                                                                 ------>NtERF2                                                                --------->ANAC58                                                                --------->ANAC58                                                                <---------bZIP60(1)                                                                --------->ANAC46                                                                --------->bZIP60(2)                              <---------WOX13(1)                --------->bZIP60(1)                           <---------YAB1                       --------->O2                         <---------ANAC46                       --------->DEAR3(1)                         <---------ANAC58              --------->ZAT14                         <---------ANAC58              <---------ZAT14                  <-----------GT1     ----------->GT1--------->ANAC46          <---------MYB52(1)--------->ATHB12    --------->WOX13(1) <---------ALFIN1      <---------YAB1     <---------ANAC55(2)  <---------ATHB12<---------ATERF1(1)       <---------ZAT14     <-----------GT1     --------->ANAC55(2)  --------->ICU4 --------->DEAR3(1)         --------->ZAT14   ttcaaattatcagttttgtttttcatttcgtgattgagaattgttgaaatcattcacttcacagcgacgccactcggactagagagacactgaagtcgat  19355200  Previous    Next  AGI:  At3g52150.1    Description:  RNA recognition motif (RRM)-containing protein. similar to CP33 (PIGMENT DEFECTIVE 322), RNA binding [Arabidopsis thaliana] (TAIR:AT3G52380.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96373.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ankyrin (InterPro:IPR002110); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343) Range:  from: 19353002    to: 19354444    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g52155.1    Description:  similar to hypothetical protein OsJ_027559 [Oryza sativa (japonica cultivar-group)] (GB:EAZ44076.1); contains InterPro domain Phosphoglycerate mutase (InterPro:IPR013078) Range:  from: 19354673    to: 19355827    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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