Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 --------->MYB46(3)         ------>MYB46(1)                                  --------->ANAC58         ------>MYB83                                     --------->ANAC55(2)       ------->GAMYB                                      --------->ANAC58       <---------MYB59                                    --------->ANAC46                        <--      --------->ANAC46                                    <---------bZIP60(1)                 -------     ------>MYB83          <---------ICU4                 --------->bZIP60(1)                --------     ------>MYB46(1)       --------->YAB1                 <---------ANAC55(2)         <-----------GT1     -------->P         --------->YAB1                 ----------->HVH21    <---------ANAC46 -------- ----->ATHB12        <----------DOF2                 --------->At4g35610   <---------ZAT2    -------- ------HVH21     <---------CCA1(2)                   <---------At4g35610   <---------At4g35610<------ ------TGA1    --------->YAB1                --------->YAB1  ----------->RAV1(1)  <-----------TBP---- ->At4g35610  <---------YAB1    <---------ANAC55(2)*TSS----------->TGA1--------->GLK1(2)     --------   cattgccaacccaactctcatagctttcatcatcatgtaaacagcgatggtaatgagatgacgcaacaacgagatgctgctggtttatataccataccat  19343500            ------------>CBF        ----------->GT1   ---------->DOF2 <---------YAB1                            ------>MYB83------>MYB46(1) -------AHL20(2)               --------->ANAC46    --------->ANAC58                     <---------ALFIN1 -------->AGL15                <---------ALFIN1    --------->ANAC58                    <---------ZAT14 --------->AG                <-----------GT1     --------->MYB46(3)           --------->ALFIN1 --------->AGL1            <-----------HVH21--------->ANAC46               --------->LBD16 --------->AGL3         <---------ANAC58   ------>MYB46(1)                <---------ANAC58 ---------AGL15         <---------ANAC58   -------->P  ------>MYB83       <---------ANAC58 ----->AHL20(2)   ----------------------->TaNAC69(2) ------->GAMYB        <---------ANAC46     ------ --------->AGL2  <-----------HVH21        ------>ZmHOX2a(1)      <---------YAB1       >>>>>>>>>>>>>>>   ataatgaaaggggtaacaatgtcatgccgtttcacacctctctcctacctcacaaccaaatagcctcacgattactccgtgtgtgtgtctccactgtcca  19343600                                                                                 <---------AHL20(2)                                                                                 --------->AHL20(1)                                                                                 <---------YAB1                                                    ------>ZmHOX2a(1)           --------->YAB1                                       <-----------GT1                          --------->AHL20(2)                                      ----------->HVH21                      --------->YAB1        --                                     <-----------HVH21--------->STY1(2)      <---------ICU4       <-- <----------DOF2             --------->YAB1  <---------ARR14(2)             <---------YAB1       ---- --->HSFB2a(2)            --------->YAB1     --------->ARR14(2)             --------->ICU4       <--- >>LFY       <------ZmHOX2a(2)  <-----------GT1  ------>ZmHOX2a(1)        --------->YAB1 <-----------HVH21   gagctttaatcttcgatcaaactcacaaaaattataacatatcaccggttcctcctagctacaaatattaaacccataataataatattgtggtcagtga  19343700              <---------MYB46(3)         ------>MYB46(1)         ------>MYB83                        --------->ATHB12        --------->MYB55(1)                  <---------YAB1       <---------MYB111(1)                <---------At4g35610      <----------DOF2       <---------MYB46(2)                <---------YAB1<---------AHL20(2) ------->KAN4(2)                      --------->GLK1(2)--------->AHL20(2) -------KAN4(1)                <---------ANAC58        <---------AHL20(1)        ---------->DOF2 ----->ICU4  <---------ANAC46  <---------ANAC58        --------->AHL20(1)  <----------DOF2 ------YAB1<-----------RAV1(1) <---------ANAC46       <---------ATHB12 <---------LBD16      ---------   ttattctcacctactgtgggtatctaaaaacttgcttaaaattctgatgatttgcaataaatttcgcatctttcccgctttaaaaaagcccaaacaaagc  19343800                                                                                                   <-                                                                                                  ---                                                                                                  <--                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               <-----                                                                                               <-----                                                                                               ------                                                                                             --------                                                                                            ---------                        <------MYB46(1)                                                   --------->YAB1                        <------MYB83                                                     <---------YAB1                       <---------AtMYB61 ------->TEIL                         <------ZmHOX2a(1)------                     <------------CBF   <---------CCA1(2)   --------->At4g35610         --------->ARR11(3)             --------->DAG2 <---------MYB46(3)              <---------At4g35610         <---------ARR11(3) ->DOF2     ---------->DOF2 --------->MYB52(2)     ------>ZmHOX2a(1)        *TSS     <---------GLK1(2)   ccattagaaacccaaaaaggagggattggtttgttattctctgtatctctctcctagtattcagctctaacacatagagaggagtcagaatatcatcagc  19343900   <----------DOF2 -----NtERF2 --->NtERF2 -------ATERF1(1) ----->RAP2.3(3)                                --------->At4g35610 --->GAMYB                                      <---------At4g35610 ----->DEAR3(1)                                 ------>NtERF2 ----->RAP2.3(2)                              --------->RAP2.3(1) ----->RAP2.6(2)                             <---------ATERF1(1) ---->ERF1                                   ------>NtERF2 ---->RAP2.3(1)                              --------->LBD16 ---->ATERF1(1)                   XXXXXXXXXXXXXXXXXXXXX>MIR472 ----At4g35610                    <----------DOF2                     <---------MYB52(1) ----ATERF1(1)            --------->TOE2(3) --------->DEAR3(1)       <-----------HVH21          ----- --->At4g35610        ---------->DOF2       --------->ANAC46 <---------CCA1(2)                 ------ ->MYB46(3)         ------>ZmHOX2a(1)      <---------LBD16<---------MYB52(1)                  <------ >At4g35610        --------->TOE2(3)   ------>ZmHOX2a(1) <-----------HVH21              <------------ --->ZAT2      ------->GAMYB  <---------CCA1(2)--------->DEAR3(1)   --------->ANAC46 <---------ETT(2)   cgcctctttcacttcaaccctccttaaacctcatctctttcctactccgccgctctctccgtcgtctctcccgttactccatttctctcgacccctccag  19344000                                                                                         <----------DOF2                                                                                         <---------DAG2                                                                                     ----------->HVH21                                                                                --------->ARR14(2)                                                                                ------->TEIL                                                                                --------->GLK1(2)                ------>ZmHOX2a(1)                                               <---------ARR11(1)              ------>ZmHOX2a(2)                                                 <---------ARR14(2)            --------->AGP1  <----------DOF2                                    <---------CCA1(2)            --------->ARR14(2)                                               <---------ANAC58            <---------ARR11(3)        <---------AHL20(2)                     <---------ANAC46       <            <---------GLK1(2)       <---------YAB1                           --------->ANAC55(2)    <     <----------DOF2 --------->HSFB2a(2)                                     <---------ANAC55(2)   <- ---->ANAC46<---------ARR14(2)   ==================================================================== --->LBD16  --------->ARR11(3)   <---------------AGL15                       <---------ANAC55(1)<---- -----RAV1(2)<------ZmHOX2a(2)   --------------->AGL15                       <---------ANAC58   ===== -----AGL1 <---------At4g35610  --------->ANAC55(2) <----------DOF2       <---------MYB52(1) <-------   gtaattccttttcagatcctctactagaccctttacttattttagtgaattggtctttctccatttccatctatcccttacgtatctgtgactttttccc  19344100                                                ------>ZmHOX2a(2)                                              --------->ARR11(3)                            ------>ZmHOX2a(1) ---------DAG2                    <-----------HVH21                                         --------- ----------DOF2          ------>ZmHOX2a(1)    <---------ARR11(3)                            <-------- --------DAG2      <---------At4g35610       --------->YAB1    <---------ATHB12            ---------- =============MADS_MADS  ==============================HOX2a_HOX2a <---------DAG2         ----------- -------------AG   --------->At4g35610  <---------ATHB12     --------->WOX13(1)     ------->TEIL   -- ==================================================================================================== ----GT1        ------>ZmHOX2a(1) --------->LBD16<----------DOF2   <----------DOF2 <---------CCA1(2)   cccttttggattgtattcctcatcttcctctgtttccgtcaaatgaatgatctttctgaaattcaatcacttttgtatcgtttctgaatctttcctctaa  19344200                                                           --------->AtMYB61          <---------ANAC58                                --------->MYB46(3)          <---------ANAC58                          --------->ZAT14          <---------ANAC46                          <---------ZAT18 ------>AGL15                                       <---------ZAT14 -------AGL15                                       --------->ZAT18                                 < ----->AGL15                                    ---------->CDC5                                 <---- ------>AGL3                                 --------->At4g35610             ----------->GT1   ------ --------->GT1                             <---------DEAR3(1)               <---------TOE2(3)-------- ======MADS_MADS                          <---------At4g35610 --------->AtMYB61              ========   taggtgaaaatggctgggaagtcgaacaaatcgaaggccaagagagcggctcagagcactaccaccaattccactactgatgttaaatccgatgctcctg  19344300                                                         <--------P                                                  --------->ZAT2                                                  <---------ZAT2                        <------------                                               --------->At4g35610            <---------ARR14(2)                                               <---------ZAT2                 --------->ARR14(2)                                              <-----------RAV1(1)            <-----------HVH21                                            <---------ZAT2<---------MYB46(3) <---------MYB52(1)                                            --------->At4g35610             --------->LBD16           <---------At4g35610             <-----------RAV1(1)      <---------At4g35610 -------------         <---------ANAC46                --------->At4g35610        <---------ZAT2 --------->At4g35610        <---------At4g35610              <---------At4g35610     <---------At4g35610    --------->LBD16    ------>ZmHOX2a(1)               --------->ARR14(2)  <---------MYB52(1)<---------LBD16         ---    <-----------RAV1(1)             <---------ARR14(2)  <-------GAMYB  --------->At4g35610  <--------  ----------->RAV1(2)              <---------MYB52(1)  --------->LBD16 <---------At4g35610 <---------ATHB51 ------>ZmHOX2a(1)                 <-----------HVH21 <---------LBD16--------->At4g35610<------------- ---------ALFIN1                  --------->LBD16 <---------At4g35610  --------->ZAT2  -------------- -----At4g35610              <---------At4g35610  --------->At4g35610  <---------ZAT2  <------------- >ZmHOX2a(1)                 <---------ZAT14<---------At4g35610  --------->At4g35610   -------------- --->RAV1(2)    <---------ZAT6  <---------LBD16<---------At4g35610 <-----------RAV1(1) <------------- ===============RAV   ------>ZmHOX2a(1) <-----------RAV1(1)     <-----------RAV1(1)<---------At4g35610   ctcctcctgttgctgctactgttcctgctactgctccggttactgctgctgctgctccggttgctactgctgctgctccggttactgctcccgataatgg  19344400  Previous    Next  AGI:  At3g52130.1    Description:  protease inhibitor/seed storage/lipid transfer protein (LTP) family protein. similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT3G07450.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80001.1); contains InterPro domain Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); contains InterPro domain Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140) Range:  from: 19342910    to: 19343451    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g52140.1    Description:  tetratricopeptide repeat (TPR)-containing protein. similar to binding [Arabidopsis thaliana] (TAIR:AT1G15290.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ80422.1); similar to hypothetical protein OsI_008531 [Oryza sativa (indica cultivar-group)] (GB:EAY87298.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15086.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Tetratricopeptide TPR-1 (InterPro:IPR001440); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 19343876    to: 19352635    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version