Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->ARR14(2)                          <---------ARR14(2)                          --------->ARR11(3)                                                   ------                          <---------ARR11(3)                                                   ------               ----------->GT1                       <----------DOF2 <---------ZAT14           <-----       --------->ARR14(2) ------->TEIL              --------->MYB52(2)      ---------->DOF2    <-----       <---------ARR14(2)<---------CCA1(2) ------->TEIL     ------>ZmHOX2a(2)              <---------   tcgggtttgaatccgaaatgtaattctgtatcttgacattctttgcatctacgttctttggatcgaaagactatacaataaagtttttctctgctttctc  19339300                                               ---------->DOF2          --------->At4g35610             <--------ATHB1                           <-------TEIL --->HSFC1(1)                             --------->ATHB12                        --------->CCA1(2) --->HSFB2a(2)                           --------->ICU4                   ------>ZmHOX2a(2) ----HSFB2a(2)                           <---------ATHB12               <---------ARR11(3) ----HSFC1(1)               ----------->GT1   <---------AHL20(2)        --------->ARR11(3)        <-- -DOF2<-----------HVH21<---------YAB1<---------YAB1              <----------DOF2 <---------ARR11(3)--   gaagaaaatgtcaactaaaactcttgtgataagttatttatcaatgatttaaagtcaattccctatgcttttgtgatcttcaagatacaatacaaacaca  19339400                                   <---------GLK1(1)                                   --------->CCA1(2)                                   --------->GLK1(1)                                  <---------ARR14(2)                        <---------ARR14(2)                                        --------->YAB1                        --------->ARR11(3)                                       <---------ATHB12                        <-----------ARR10                                      --------->WOX13(1)           --------->ARR11(3)     --------->ARR14(2)                        ------->TEIL         <---------TOE2(3)        <---------ARR11(3)                 --------->ANAC46         ----------->ARR10        <-----------ARR10                  --------->ANAC58 -----TEIL <---------ARR11(3)     --------->ARR11(3)                 --------->ANAC58           ----- ------->YAB1          <---------CCA1(2)--------->At4g35610   <XXXXXXXXXXXXXXXXXXXXMIR416      ------   ttcatgctactaagatactaacttcaaatcttggcagatatcagctataactatatcaatatgaactgtttacgcatgaatcaatcatacaaacacaaaa  19339500                       ----------->GT1                      <---------HSFC1(1)                      --------->HSFC1(1)                      --------->HSFB2a(2)             <---------ICU4                                    <---------AHL20(2)             --------->YAB1                            --------->ALFIN1         <---------AHL20(2)                            <---------ANAC46                            --         --------->AHL20(2)                           --------->ALFIN1                             --    <------ZmHOX2a(1) <---------HSFB2a(2)            <---------ANAC46                      --------->AHL20(2) ---->DAG2  <---------ATHB12                       <---------LBD16        <---------HSFB2a(1)      -- ---->DOF2--------->WOX13(1)    ----------->GT1<---------ARR14(2)<---------YAB1      <----------DOF2   agcataggaaattaatcatgcggtctagaaaaatgtgtaaatacaaacaaatatgggggggggatttattttagaaacattcgggctctttatgtaaata  19339600                                                          --------->AHL20(1)                                                  <---------ANAC58                                                  <---------ANAC58                                                  <---------ANAC55(2)                                                  <---------ANAC55(1)                                                  <---------ANAC46        <---------ANAC55(2) ------->GAMYB         --------->ANAC55(2)    --------->MYB46(3) <--------        --------->ANAC55(2)--------->MYB46(3)  <---------MYB52(1)       ------------>CBF *TSS ------->ANAC46            <---------MYB52(2) <---------DAG2       <-------TEIL  <----------DOF2 ------->ANAC58         <----------ID1        <----------DOF2   --------->At4g35610   <---------YAB1 ------->ANAC58   ------->GAMYB   <---------ARR14(2)      <---------AHL20(1)     <---------DAG2   caagaaaattatgtgtccaactgaaaacaacaaacaaatatgggcctcctttacgtgttatatattagatgcacaacaatcgacttttctgattacgatt  19339700                      ------>ZmHOX2a(1)              --------->WRKY12             <---------MYB52(1)            <-------GAMYB                                                              ------>ZmHOX2a(2)           <---------MYB46(3)                                                        --------->ARR11(3)           ==================HOX2a_HOX2a                                    ----------->GT1           ------>ZmHOX2a(2)                                                --------->ANAC58           --------->MYB52(2)        --------->ANAC46                       --------->ANAC58          <------ZmHOX2a(2)      <-----------GT1                           <---------TOE2(2)          ===================HOX2a_HOX2a                      <---------LBD16        <---------ARR11(3)   ==============HOX2a_HOX2a<---------ANAC58              ----------->HVH21<---------TOE1(2)   ------>ZmHOX2a(1)----------->RAV1(2)                <----------DOF2    <-----------RAV1(2)   ===============HOX2a_HOX2a <---------MYB52(1)    ------>NtERF2       --------->ANAC46        <---- -YAB1   <---------MYB52(1) <---------ANAC58   --------->DEAR3(2)   --------->DEAR3(2)<------ZmHOX2a(2)   caatcctctccgatcgttggcctcctgtttccgttttactcgacatcgttccgacgacttttgacctggaatcgacgcaggtaacaagatcgtaatctgt  19339800                                --------->ARR14(2)                                ------->TEIL                                                        <                                <---------ARR14(2)                                                 <-                                --------->ARR11(3)    <----------DOF2                    <---------ARR11(3)                                <---------AGP1  <---------ICU4<---------ANAC58           --------->ARR11(3)                                <---------ARR11(3)   <---------ANAC58                --------->TOE2(2)                      <<<<<<<<<TBF1            <---------YAB1 <---------ANAC58       --------->TOE1(2) -----MYB52(1)    <-----------GT1 ------>ZmHOX2a(2)  <---------ANAC58          <---------REM1(1)-----   tttttttgtctaattcggtttttcttcttctatggatcttaatttgataatttttgctttgtttccgagccgattgaattgttgtaacctaggtcttcct  19339900                                                <-------GAMYB                                               <------MYB83                                               <---------MYB46(3)                                               <------MYB46(1)                                               ----------->GT1                            <----------          <-----------GT1                    <---------MYB52(1)                --------->HSFB2a(2) ----------DOF2                             <-------GAMYB                  --------->GLK1(1) --------DAG2                       <---------TOE1(2)            <------MYB83  <---------HSFB2a(2) ->ZmHOX2a(1)         <----------DOF2      <-----------RAV1(1)   <------MYB46(1)  <---------GLK1(2)   gccttttgcaatttcccttcttcgctcttagttgattctaggtttctgttggttaatttctgaagcttggttctgagatttctagatttgtttttccatc  19340000                <---------YAB1                                                                    <--                <---------AHL20(2)                                                         <---------HSFB2a(2)              --------->CCA1(2)                                                          --------->MYB52(1)    <-------GAMYB        <---------DAG2                                      --------->AHL20(2)   ---  <---------ANAC58       <----------DOF2                                     <---------AHL20(2)   ---  <---------ANAC58--------------------->WRI1                   <----------DOF2           -------->P -GT1       <------ZmHOX2a(1)  ---------->ID1    <------ZmHOX2a(1)      <---------AHL20(2) --------->HSFB2a(2)   ttaggcgtttgataggatataattgtgcttttcgtcgttctatggaatcgaggacgatgatgctccttttgtatttgattttattgaaaactaccagaag  19340100                                            <---------ANAC58                                            <---------ANAC58                                            <-------GAMYB                                           <------MYB46(1)                                           <------MYB83                                           --------->MYB55(2)                                           --------->MYB52(2)    --------->SPL7                         <---------MYB46(3)   <---------MYB52(1)                     <---------AtMYB61 <---------ANAC55(2)      --------->At4g35610 -------ARR14(2)          <---------At4g35610<--------P                                            -- ------>GLK1(2)     <----------DOF2    <---------YAB1                                              <- ------>ARR14(2) <---------AHL20(2)    <-----------RAV1(1)     <---------At4g35610             ------   aatccgtatgctattgtattttcttttgagcttaaatagttatgttggttgctaaatagtttgagagcttatctgttcaacagtgacttcaattcaacta  19340200  Previous    Next  AGI:  At3g52115.1    Description:  ATCOM1/ATGR1/COM1 (ARABIDOPSIS THALIANA GAMMA RESPONSE GENE 1, GAMMA RESPONSE 1). Identical to Protein gamma response 1 (GR1) [Arabidopsis Thaliana] (GB:Q9ZRT1;GB:Q9SUZ3); similar to protein transport protein-related [Arabidopsis thaliana] (TAIR:AT5G52280.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15074.1); contains InterPro domain Prefoldin (InterPro:IPR009053) Range:  from: 19337311    to: 19339301    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g52120.1    Description:  SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein. Identical to Splicing factor 4-like protein [Arabidopsis Thaliana] (GB:Q94C11;GB:Q9SUZ3); similar to D111/G-patch domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G52350.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15077.1); contains InterPro domain SWAP/Surp; (InterPro:IPR000061); contains InterPro domain D111/G-patch; (InterPro:IPR000467) Range:  from: 19339689    to: 19342948    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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