Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              --------->YAB1                    <---------ARR14(2)              ------>ZmHOX2a(2)            <---------ARR11(3)                                                 <------ZmHOX2a(1)            --------->ARR11(3)  --------->ANAC58                              --------->ZAT18        --------->YAB1     <---------YAB1                             ------->MYC2       --------->ICU4      <---------ATHB12                           <-------MYC2               <--- ---------At4g35610 --------->ARR14(2)                                ------->MYC3               <--- -------->At4g35610<---------CCA1(2)       <<<<<<<ZML2                <-------MYC3          --------- ->REM1(2)  <-----------ARR10   --------->ANAC58                      <-------MYC4         <---------YAB1   gaagcagcattgatgatcttcgtatccctatcataagaaaccctagaacatagaaatcgagagggtttagcacatgtaagaggactatcgagtatgattt  19329900                                                                     <-------TEIL                                                             <---------HSFB2a(2)                                        <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <----------DOF2 <---------ZAT6                       --------->SPL7         --------->HSFB2a(2) ------ANAC58                  <-----------HVH21            <---------LBD16<---------ANAC58 ------ANAC58                 <----------DOF2        <---------CCA1(2)--------->YAB1   --------->GLK1(1) >ATHB12                    ------>NtERF2    ------->TEIL<---------SPL7    <---------ANAC58   cgagtgatagaaacttcaattacttcttggtgccttcagggacgacgaatcgctcatatcgttcgggagcattcatggcttaatcggagatttcaagctt  19330000                                                                                                    <                                                                                                    <                                                                                                    <              <------NtERF2                                                                         -             <---------At4g35610                                                                    -             <------NtERF2                                   <---------AHL20(1)                    <-             --------->At4g35610                             --------->AHL20(1)                    <-             ------>NtERF2                                *TSS<---------YAB1                    <----             --------->LBD16                           --------->YAB1 <---------bZIP60(1)      <-----            ----------->RAV1(1)                 --------->HSFB2a(2)   --------->bZIP60(1)  ==========            --------->DEAR3(1)                  <---------HSFB2a(2)--------->ANAC46        ----------           --------->RAP2.3(1)  <---------ARR11(3)   --------->ANAC58 --------->O2  =================           <---------LBD16      --------->ARR11(3)   --------->ANAC58 <---------O2  ---------->DOF2<-    <----------DOF2      --------->WRKY18(1)<----------DOF2  --------->AHL20(2) --------->YAB1 ------   cgctctctttttcgccgcagagagacagtcaagagttcttcagtttctttctggcaaacaaaatataatacgacgtcgtttttcataaaagaaaaaagat  19330100        ------->MYC3        <-------MYC3        <-------MYC2        ------->MYC2        <-------MYC4        ------->MYC4        ------->PIF5        <-------PIF5       --------->TGA1a       <---------TGA1a       --------->O2       <---------O2     <---------ALFIN1 --------->GLK1(1) ---------ARR14(2) ---------ARR11(1) -----------ARR10 ------>TEIL -------->ARR14(2)   <------------CBF --------ARR14(1)   --------->ATHB51 --------CCA1(2)    --------->ATHB12                ----------->GT1    <---------ANAC46 --ZmHOX2a(2)      <---------YAB1             <------ZmHOX2a(2)       ----------------->AGL1 ----ARR11(3)   <---------AHL20(2)           --------->ARR14(2)       <-----------------AGL1 ================bZIP_DOF    <---------ZAT14 <---------ARR14(2)       <-----------------AGL2 >DOF2 --------->ANAC55(2)   <---------ARR14(2)------>ZmHOX2a(2)    <-----------GT1 ================bZIP_DOF <---------ANAC46 <---------DEAR3(2)     <---------ICU4                    < --------GLK1(2)<---------YAB1            --------->ETT(1)      <---------AHL20(1)             <----- --->ARR11(3)   --------->AHL20(2)      <-----------HVH21   --------->YAB1     <------ZmHOX2a(1)-----   cgaatctccacgtgttatattattattggtgtatacagtttgggtcggatcgggccgataaaacataatatttccgtttaaggacctctaggtttatatt  19330200                                                                          ------>ZmHOX2a(2)                                                                         <------ZmHOX2a(2)                                                                        --------->ARR14(2)            <------ZmHOX2a(1)                      <------ZmHOX2a(1)    <---------ARR14(2)           <----------ID1             >>>>>>>>>MYB98                    <---------ARR11(3)        ---------->DOF2              ------>MYB46(1)                    --------->ARR11(3)   ------------>CBF                  --------->MYB52(1) ---------->DOF2--------->At4g35610   --------------->AGL15             ------>MYB83  =============================HOX2a_HOX2a     -----  --------->ANAC46                 <---------MYB59 ==============================HOX2a_HOX2a--------- -----------GT1        --------->AHL20(2)         --------->LBD16      <---------At4g35610--------->ANAC58 ----AHL20(2)          <---------AHL20(2)       <---------LBD16    <-----------HVH21      --------->ANAC58 ---->AHL20(2)        --------->AHL20(2)   --------->AHL20(2)---------->DOF2              --------->ANAC46   atttacacaataaaggacgagtgatttaattcagaaacctaacaaaaaattcaggaaaaaaagaaaagaagtcagatccctaaaaatcgaacccgaaagc  19330300                                                                              ------>NtERF2                                                                             <---------ALFIN1                                                                             --------->DEAR3(1)                                                                            --------->RAP2.3(1)                                                                            --------->ORA47(2)                                 <---------ANAC58                           --------->DEAR4(2)                                 <---------ANAC46                           <------NtERF2                            --------->ANAC55(2)                            ------>NtERF2                            --------->O2                                   <---------ATERF1(1)                            <---------ANAC55(2)                            <---------RRTF1(1)<-------                            <---------O2                                   <---------RAP2.3(1)<------                        <-----------HVH21                                 <---------RAP2.3(2)<-------                       <----------DOF2                                   ---------->ID1      <-------              ------>MYB46(1)    <---------ANAC58                   <----------DOF2      <---------MYB52(1) ------>GT1   ------>MYB83  --------->ANAC46                    <----------DOF2  <----------DOF2 ->DOF2    --------->DEAR3(2)  ------->TEIL--------->AHL20(2)<-----------GT1--------->ATERF1(1)   gtaaaacttgaaaaccgactatggcctttcacgtagcttgtccaattacatggtatgtttttttttctttcttttggcgcctcctttactcgttggcttg  19330400                                                                   <------NtERF2                                                                  --------->LBD16                                                                  ----------->GT1                                                               --------->ZAT2                                                               <---------ZAT2                                                               --------->At4g35610                                                               ------>NtERF2                                                              --------->DEAR3(1)                                                             --------->ERF1                                                            <---------At4g35610                                                            --------->At4g35610                                                           --------->ANAC46   <---------At4g35610                                                     <----------DOF2   --------->ARR14(2)     <-----------GT1                              <---------MYB52(1)   <---------ARR14(2) --ANAC58                                       <---------ANAC58 --------->RAP2.6(2)             <--- ----DOF2                                       <---------ANAC58<---------LBD16    <----------DOF2 --ANAC46                                <----------DOF2  <---------LBD16   <---------ANAC58     ---- --ANAC58                   <---------LBD16  <----------DOF2--------->LBD16 <---------ANAC58     <---   tttgtttttactaatcgaattgttctaatttgggggttttcttctttctttcgttctttctccgcagccggaaaatttgcttctgcgttttggggttttc  19330500                                             <-------TEIL                                           <                                            =====================HOX2a_HOX2a          <---------TOE1(3)    --------->YAB1                         --------->AGP1                   --------->LBD16        <-  --------->ARR14(2)                       --------->ARR11(3)         <---------ARR14(2)           --  <---------ARR14(2)                       <---------ARR11(3)         --------->ARR14(2) --------->GLK1(1)  --------->GLK1(2)             ------->TEIL<------ZmHOX2a(2)   --------->TOE1(2)     <---------TOE2(3) <---------GLK1(2)             <---------CCA1(2)          <------ZmHOX2a(1)<---------LBD16       ==== ------HSFB2a(2)       <---------TOE2(3)  <---------GLK1(1)    <---------ANAC58   <---------At4g35610 ----->HSFB2a(2)     <<<<<<<<<WRKY18 ---------->DOF2   <-----------RAV1(2)----------->RAV1(2)    <--- ------LBD16        --------->WRKY18(1)   --------->GLK1(1)    <---------ANAC58   --------->At4g35610   tcggaatcttcatggtaatgaagtcaaggatgtgtatctcaaagagatccattctcttcaggagttcgtgcgaaacccctgggatgctgaggtttccaag  19330600                    ------->TEIL                  <-------MYC3                  <-------MYC2             <------ZmHOX2a(2)            --------->AGP1            --------->ARR14(2)            <---------ARR14(2)           --------->At4g35610                                          <------MYB46(1)           <---------At4g35610                            <---------ANAC58       <-----------HVH21                                  <---------ANAC58                         <- <---------SPL7   ------->MYC3                            <---------ANAC46                        --- ---------DEAR3(2)------->MYC2                            <---------RAP2.6(2)                     <-- --------------AtSPL3      <---------ANAC58              <---------LBD16<------MYB83             <--- ------------->AtSPL3      <---------ANAC58              --------->RAP2.6(3)        --------->ATHB12< ===================HOX2a_HOX2a                       <----------DOF2  <---------AtMYB61   <---------DEAR3(1) ---ZmHOX2a(1)<-------TEIL--------->ZAT2          ------>ZmHOX2a(1) <-----------RAV1(1) <---------DEAR3(1)   gacggtaccgttcagatccatgtgcctaagcttgctgttttcgatactggtcctcgcattgcggctagaaatgttggtgttgggagtgattcggcgatgg  19330700     --------->At4g35610           --------->ANAC58     <---------At4g35610           --------->ANAC58  <-------GAMYB              --------->ZAT2 <-----------RAV1(1)         --------->At4g35610                                     <---------WOX13(1) --------->MYB55(2)   <------MYB46(1)                                              <--------ATHB1 <---------MYB46(3)   <------MYB83 --------->ANAC46                                --------->ATHB12 --------->MYB111(2) <---------------AtSPL8       --------->HSFB2a(2)             <---------YAB1 ------GAMYB         --------->MYB59         <-----------RAV1(1)                  <---------ATHB12 --------->MYB.PH3(2)--------------->AtSPL8  <---------REM1(1)                    --------->ICU4 -------MYB46(3)  --------->ARR14(2)   --------->ZAT2                     <---------At4g35610 ------TOE2(3)    <---------ARR14(2)   <---------ZAT2          --------->ALFIN1------------>ATHB5 --------P    <-----------------AGL1  ------->TEIL<---------HSFB2a(2)    <-----------RAV1(1)   ------   aggttgttgctgcatcatcgaatttggtaccagctaaacgcaccttggtgttgcagaagaaggctgtggaagtttatgctgcgaatgattgttctggcga  19330800  Previous    Next  AGI:  At3g52090.1    Description:  ATRPB13.6 (Arabidopsis thaliana RNA polymerase II 13.6 kDa subunit); DNA binding / DNA-directed RNA polymerase. Identical to DNA-directed RNA polymerase II subunit RPB11 (RPB13.6) [Arabidopsis Thaliana] (GB:Q38859); similar to ATRPC14 (Arabidopsis thaliana RNA polymerase I(A) and III(C) 14 kDa subunit), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT2G29540.2); similar to ATRPC14 (Arabidopsis thaliana RNA polymerase I(A) and III(C) 14 kDa subunit), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT2G29540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44374.1); contains InterPr Range:  from: 19328831    to: 19330058    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g52100.1    Description:  PHD finger family protein. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G08020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40817.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 19330321    to: 19333751    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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