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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
----------->
HVH21
<---------
ARR11(3)
<---------
At4g35610
<---------
ARR14(2)
--------->
ZAT2
<------
MYB46(1)
--------->
ANAC58
--------->
At4g35610
<------
MYB83
--------->
ANAC58
<---------
ZAT2
<------
ZmHOX2a(1)
--------->
ANAC46
<---------
ZAT14
<------
ZmHOX2a(1)
<---------
At4g35610
<---------
ANAC46
--------->
ZAT14
tacttaagaggatgaggaagttggtatccagcaaacaagacattctcgtcgcgatgaagttgc
ctaaaacaaaaatttcagaacagagctgacaaaaatt
19329700
--------->
LBD16
<---------
LBD16
<---------
AtMYB61
<
<-------
TEIL
<---------
TOE1(2)
-
<----------
DOF2
----------->
GT1
------->
TEIL
--------->
YAB1
--------
<----------
DOF2
---------->
DOF2
---------->
DOF2
------>
NtERF2
<---------
ATHB12
------->
GAMYB
agggctttcttctttctgagaaaagagttgcaaaatcaacaaaaagacgtac
atgcggacaatgtttccaatcgtatggtcttctctctcaaccgtgaag
19329800
--------->
YAB1
<---------
ARR14(2)
------>
ZmHOX2a(2)
--------->
ARR11(3)
<------
ZmHOX2a(1)
<---------
ARR11(3)
--------->
ANAC58
--------->
ZAT18
--------->
YAB1
<---------
ATHB12
<-------
MYC4
--------->
ICU4
<---------
YAB1
------->
MYC3
<---
---------
At4g35610
--------->
ARR14(2)
<-------
MYC2
<---
-------->
At4g35610
<---------
CCA1(2)
<<<<<<<
ZML2
------->
MYC2
---------
->
REM1(2)
<-----------
ARR10
--------->
ANAC58
<-------
MYC3
<---------
YAB1
gaagcagcattgatgatcttcgtatccctatcataagaaacc
ctagaacatagaaatcgagagggtttagcacatgtaagaggactatcgagtatgattt
19329900
<-------
TEIL
--------->
HSFB2a(2)
<xxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<----------
DOF2
<---------
ZAT6
--------->
SPL7
<---------
HSFB2a(2)
------
ANAC58
<-----------
HVH21
<---------
LBD16
<---------
ANAC58
------
ANAC58
<----------
DOF2
<---------
CCA1(2)
--------->
YAB1
--------->
GLK1(1)
>
ATHB12
------>
NtERF2
------->
TEIL
<---------
SPL7
<---------
ANAC58
cgagtgatagaaacttcaattac
ttcttggtgccttcagggacgacgaatcgctcatatcgttcgggagcattcat
ggcttaatcggagatttcaagctt
19330000
<
<
-
<------
NtERF2
<
<---------
At4g35610
-
--------->
At4g35610
--------->
AHL20(1)
<-
<------
NtERF2
--------->
AHL20(2)
<-
------>
NtERF2
*
TSS
<---------
YAB1
<----
--------->
LBD16
--------->
YAB1
--------->
bZIP60(1)
<-----
----------->
RAV1(1)
<---------
HSFB2a(2)
<---------
bZIP60(1)
==========
--------->
DEAR3(1)
--------->
HSFB2a(2)
--------->
ANAC46
----------
--------->
RAP2.3(1)
--------->
ARR11(3)
--------->
ANAC58
--------->
O2
=================
<---------
LBD16
<---------
ARR11(3)
--------->
ANAC58
<---------
O2
---------->
DOF2
<-
<----------
DOF2
--------->
WRKY18(1)
<----------
DOF2
<---------
AHL20(1)
--------->
YAB1
------
cgctctctttttcgccgcagagagacagtcaagagttcttcagtttctttctggcaaa
caaaatataatacgacgtcgtttttcataaaagaaaaaagat
19330100
<-------
PIF5
<-------
MYC2
------->
PIF5
------->
MYC3
<-------
MYC3
------->
MYC2
<-------
MYC4
------->
MYC4
<---------
O2
<---------
TGA1a
--------->
ANAC55(2)
--------->
O2
<---------
ALFIN1
--------->
GLK1(1)
---------
ARR11(1)
-----------
ARR10
-------->
ARR14(2)
---------
ARR14(2)
------>
TEIL
<------------
CBF
--------
ARR14(1)
--------->
ATHB51
--------
GLK1(2)
--------->
ATHB12
----------->
GT1
<---------
ANAC46
--
ZmHOX2a(2)
<---------
YAB1
<------
ZmHOX2a(2)
<-----------------
AGL2
----
ARR11(3)
--------->
AHL20(2)
<---------
ARR14(2)
----------------->
AGL1
================
bZIP_DOF
<---------
ARR14(2)
------>
ZmHOX2a(2)
<-----------------
AGL1
>
DOF2
--------->
TGA1a
<---------
ZAT14
--------->
ARR14(2)
<-----------
GT1
================
bZIP_DOF
<---------
ANAC46
<---------
DEAR3(2)
<---------
ICU4
<
--------
CCA1(2)
<---------
AHL20(2)
--------->
ETT(1)
<---------
AHL20(1)
<-----
--->
ARR11(3)
<---------
YAB1
<-----------
HVH21
--------->
YAB1
<------
ZmHOX2a(1)
-----
cgaatctccacgtgttatattattattggtgtatacagtttgggtcggatcgggccgataaaacataatatttccgtttaaggacctctaggtttatatt
19330200
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR11(3)
<------
ZmHOX2a(1)
=============================
HOX2a_HOX2a
<----------
ID1
>>>>>>>>>
MYB98
--------->
ARR14(2)
---------->
DOF2
--------->
MYB52(1)
<---------
ARR14(2)
--------------->
AGL15
------>
MYB83
==============================
HOX2a_HOX2a
------------>
CBF
------>
MYB46(1)
---------->
DOF2
<---------
ARR11(3)
-----
--------->
ANAC46
<---------
MYB59
<------
ZmHOX2a(1)
--------->
At4g35610
---------
-----------
GT1
<---------
AHL20(2)
--------->
LBD16
<---------
At4g35610
--------->
ANAC58
----
AHL20(2)
--------->
AHL20(2)
<---------
LBD16
<-----------
HVH21
--------->
ANAC46
---->
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
---------->
DOF2
--------->
ANAC58
atttacacaataaaggacgagtgatttaattcagaaacctaacaaaaaattcaggaaaaaaagaaaagaagtcagatccctaaaaatcgaacccgaaagc
19330300
------>
NtERF2
<---------
ALFIN1
--------->
DEAR3(1)
--------->
DEAR4(2)
--------->
ORA47(2)
<---------
ANAC58
--------->
RAP2.3(1)
<---------
ANAC58
<------
NtERF2
--------->
ANAC46
<---------
RAP2.3(1)
--------->
O2
------>
NtERF2
<---------
O2
<---------
RRTF1(1)
<-------
--------->
ANAC55(2)
<---------
ATERF1(1)
<------
<-----------
HVH21
<---------
RAP2.3(2)
<-------
<----------
DOF2
---------->
ID1
<-------
------>
MYB46(1)
<---------
ANAC46
<----------
DOF2
<---------
MYB52(1)
------>
GT1
------>
MYB83
<---------
ANAC55(2)
<----------
DOF2
<----------
DOF2
->
DOF2
--------->
DEAR3(2)
------->
TEIL
--------->
AHL20(2)
<-----------
GT1
--------->
ATERF1(1)
gtaaaacttgaaaaccgact
atggcctttcacgtagcttgtccaattacatg
gtatgtttttttttctttcttttggcgcctcctttactcgttggcttg
19330400
<------
NtERF2
----------->
GT1
--------->
LBD16
--------->
ZAT2
<---------
ZAT2
--------->
At4g35610
------>
NtERF2
--------->
DEAR3(1)
--------->
ERF1
--------->
At4g35610
--------->
LBD16
<---------
At4g35610
--------->
ANAC46
<---------
ANAC58
<----------
DOF2
<---------
ARR14(2)
<-----------
GT1
<---------
MYB52(1)
--------->
ARR14(2)
--
ANAC58
<---------
ANAC58
--------->
RAP2.6(2)
----
----
DOF2
<---------
ANAC58
<---------
LBD16
<---
--
ANAC58
<----------
DOF2
<---------
LBD16
<---------
ANAC58
<---
--
ANAC46
<---------
LBD16
<----------
DOF2
<---------
At4g35610
<----------
DOF2
tttgtttttactaatcgaattgttctaatttgggggttttcttctttctttcgttctttctccgcag
ccggaaaatttgcttctgcgttttggggttttc
19330500
<-------
TEIL
<
=====================
HOX2a_HOX2a
<---------
TOE1(3)
--------->
YAB1
--------->
AGP1
--------->
LBD16
--
--------->
GLK1(2)
--------->
ARR11(3)
<---------
ARR14(2)
<-
<---------
ARR14(2)
<---------
ARR11(3)
--------->
ARR14(2)
--------->
GLK1(1)
--------->
ARR14(2)
------->
TEIL
<------
ZmHOX2a(2)
--------->
TOE1(2)
<---------
TOE2(3)
<---------
GLK1(2)
<---------
CCA1(2)
<------
ZmHOX2a(1)
<---------
LBD16
====
----->
HSFB2a(2)
<---------
TOE2(3)
<---------
GLK1(1)
<---------
ANAC58
--------->
At4g35610
------
LBD16
<<<<<<<<<
WRKY18
---------->
DOF2
<-----------
RAV1(2)
----------->
RAV1(2)
<---
------
HSFB2a(2)
--------->
WRKY18(1)
--------->
GLK1(1)
<---------
ANAC58
<---------
At4g35610
tcggaatcttcatggtaatgaagtcaaggatgtgtatctcaaagagatccattctcttcaggagttcgtgcgaaacccctgggatgctgaggtttccaag
19330600
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AGI:
At3g52090.1
Description:
ATRPB13.6 (Arabidopsis thaliana RNA polymerase II 13.6 kDa subunit); DNA binding / DNA-directed RNA polymerase. Identical to DNA-directed RNA polymerase II subunit RPB11 (RPB13.6) [Arabidopsis Thaliana] (GB:Q38859); similar to ATRPC14 (Arabidopsis thaliana RNA polymerase I(A) and III(C) 14 kDa subunit), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT2G29540.2); similar to ATRPC14 (Arabidopsis thaliana RNA polymerase I(A) and III(C) 14 kDa subunit), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT2G29540.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44374.1); contains InterPr
Range:
from: 19328831
to: 19330058
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At3g52100.1
Description:
PHD finger family protein. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G08020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40817.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)
Range:
from: 19330321
to: 19333751
Orientation: Forward
Links:
TAIR
MIPS
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