Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <---------AHL20(2)                            <---------AHL20(2)                    <---------AHL20(2)                    --------->AHL20(2)                 ------->TEIL--------->AHL20(2)         ---------->DOF2 <---------AHL20(2)                                --------->ZAT6      --------->TOE2(3)  --------->AHL20(2)             ----------->GT1  <-----------GT1      ------->GAMYB <---------AHL20(1)                 ----------->GT1 <---------AHL20(2)   <--------     --------->MYB46(3) <---------AHL20(2)      <----------ID1         --------->AHL20(2)   ---------     <----------ID1 --------->AHL20(1)    --------->ATHB12         --------->AHL20(2)<---------------AtSPL8   <-----------GT1 --------->AHL20(2)<---------YAB1   ------->TEIL <---------AHL20(2)<---------------AtSPL3   gtttataaccacaaagatgaattttatttatttattttcatgtttgatttgcgacgaatgttaaaacatataatttaacactaaaaatttgtactgaact  19312500                                                                         --------->ARR11(3)                            <---------HSFB2a(2)                      ---------->DOF2                      <---------AHL20(1)                         --------->HSFC1(1)                 <                      --------->AHL20(1)                         --------->HSFB2a(2)                -                      <---------ARR11(3)         <---------YAB1  <---------HSFB2a(2)         --------                <-----------GT1            <---------AHL20(2)    <---------HSFC1(1)     --------->MYB46(3) -ZAT14       <---------AHL20(2)           --------->AHL20(2)    >>>>>>>ZML2          --------->MYB52(1) >ZAT14 <---------ANAC55(2) --------->HSFB2a(2)--------->YAB1 --------->AGP1       --------->ANAC46--   gcaatacattacatatataaacaatattttctaaaaattggctcatttattgtaattctattcagttctagaaaagaactcgtagactcaacgactagta  19312600                     <---------ANAC58              --------->DOF5.7(2)              <---------MYB52(1)             --------->TOE1(3)            ----------->GT1            <---------ANAC55(2)      <---------AHL20(2)      --------->AHL20(2)                                        ------------>CBF     <---------AHL20(1)             <-----------GT1    --------->AHL20(2)          <-----------HVH21     <---------AHL20(2)         <----------DOF2       <---------AHL20(2)           <-----------TGA1     --------->AHL20(2)    <---------AHL20(2)       <---------RVE1(1)             <---------ANAC55(2)  --------->YAB1     <---------ANAC46               <---------CCA1(1)        --------->ARR14(2) <---------YAB1      <---------ANAC58  <----------DOF2<---------YAB1        <------ZmHOX2a(1) ---------AHL20(2)   <---------ANAC55(2)           <---------ARR11(3)     <---------TOE2(3)   <------ -------->AHL20(2)   --------->ANAC55(2)           --------->ARR11(3) <----------DOF2        -------- --->GT1    <---------ANAC46 <-----------GT1   <---------At4g35610  <---------ATHB12        --------- ------->YAB1--------->TOE2(3)---------->ID1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->ANAC55(2)   attttaataaaattacgttaatttcgtattttttcttttttcttttgtcatcagatattatttagggccaatcttttaggaatcgcgtcatatttcgtta  19312700                                       <------------CBF                                      --------->ATHB12                                      -------->ATHB1              <---------LBD16                                      --------->ATHB51        --------->AHL20(1)                                     <---------ATHB51         <---------AHL20(1)    ------------>CBF                 --------->AHL20(2)       --------->AHL20(2)     <---------AHL20(1) <---------ANAC58               >>>>>>>>>RAP2.2               <---------AHL20(2)     <---------AHL20(2) <---------ANAC58             <---------ARR11(3)           --------->YAB1            --------->AHL20(1) ---MYB52(1)        <---------TOE2(3)<---------AHL20(2)   <---------YAB1             --------->AHL20(2) ->TOE2(3)        ---------->DOF2    --------->ICU4     --------->YAB1 <---------GLK1(1) -->GT1    ----------->GT1    --------->ARR11(3)       <---------ATHB12--------->GLK1(1)   atttcgttcaatagcgcaaaaaaaggtttcgatatctaaattattgatacagttcaaatcataataaattcggaattcagggtttaataaatttcggttt  19312800                                                                               <------NtERF2                                                                              ------>NtERF2                                                                              <---------DEAR3(2)                                                                             <---------DEAR3(1)                                                                             <---------At1g77200                                                                           <-----------HVH21                                                                        <---------ARR14(2)                                                                        --------->ARR14(2)                                                                    <------NtERF2                 ---                                                                   ------>NtERF2                 ----                            <---------ANAC58                      --------->DEAR3(1)             ====                            <---------ANAC46                      ----------->HVH21           <------                   <-------GAMYB                                  <---------DEAR3(1)          -------                   --------->At4g35610                           --------->RAP2.3(1)          -------                   <---------At4g35610     <---------AHL20(2)   <---------ATERF1(1)        ----------                 <-----------RAV1(2)       --------->AHL20(2) --------->DEAR3(2)    =================                <-------TEIL<---------ANAC58           <---------ZAT14  ------->TEIL---------->DOF2   acatagatgaataatcggttcagttgagagtcgtgttttgtttaaaaaaatggggagaacagagaccggcgacgaatcgtcggcgagaaagatgcgacgt  19312900       --------->ANAC46       --------->O2       <---------O2       --------->TGA1a         --------->ARR14(2)       --------->bZIP60(2)  <------NtERF2       <---------TGA1a <---------REM1(2)     <---------ALFIN1 --------->HSFB2a(2) ------>DAG2          <---------HSFB2a(2) ------>DOF2     <---------ARR11(1) ================bZIP_DOF  ------>NtERF2                    --------->ATHB12                      <-- ---ANAC46       ------->TEIL  <---------ARR14(2)         XXXXXXXXXXXXXXXXXXXX>MIR858  <-----------HVH21 -->ANAC58      <---------GLK1(2)                        <---------ANAC58            --------->DEAR3(2) -->ANAC58      <---------ARR14(1)                       --------------------->WRI1 <---------At5g28300 ->HVH21        <---------CCA1(2)                        <---------ANAC58  --------------------->WRI1 ================bZIP_DOF --------->ANAC46           <----------DOF2      --------->TOE1(1)--------->At4g35610   aaagtacccacgtcgatcgaatctctagacgccgatatactgtgcatcatcttctcttttcttgatttgttcgacctcgttcattgtaccgtcgtctgca  19313000                                                              --------->WRKY38(1)                                                            --------->REM1(2)                                                           --------->ALFIN1                                                         <---------ANAC58                                                         <---------ANAC55(2)                                                         --------->ANAC55(2)                                                         <---------ANAC58                                                         <---------ANAC46       <XXXXXXXXXXXXXXXXXXXXMIR159C                  --------->ARR14(2)                   <---------TOE2(3)       <XXXXXXXXXXXXXXXXXXXXMIR159B                  --------->GLK1(2)       <----------DOF2      <XXXXXXXXXXXXXXXXXXXXMIR159A                   <---------ARR14(2)--------------->AtSPL8  --------->LBD16                            <---------MYB46(3)<---------WRKY18(1)  --------------->AGL15  ------>ZmHOX2a(1)               <----------DOF2 <---------ANAC58--------->TOE2(3) <---------------AGL15  --------------->AtSPL8      <---------GLK1(2)   <---------ANAC58<---------MYB59   <---------YAB1 <---------ANAC46     --------->ARR14(2)     --------->ATHB12 --------->WRKY12   <-----------GT1   <- -------ARR14(2)      <---------ARR14(2)    <---------YAB1--------->LBD16    <---------DAG2 <------ZmHOX2a(1)   attcctggtactcccttcaatccaaatccctagcttcttttttctcatggttgcgaatcccgtgttgaccttattcgaacttttttcttattgaggaatg  19313100                                                                                   <---------ANAC55(2)                                                                                   --------->ANAC55(2)                                     <------NtERF2                             <-----------HVH21                                    --------->LBD16                            <-----------TGA1                                   <---------HSFB2a(2)                        <---------O2                                   --------->HSFB2a(2)                        --------->O2                                   <---------ATERF1(2)                        --------->bZIP60(2)                                  <---------LBD16                             <---------TGA1a                              <---------ANAC58                                --------->ANAC58 ------                          --------->HSFC1(2)                                  --------->TGA1a  <-----                <---------At4g35610--------->ETT(1)                           --------->ANAC46 ------                --------->At4g35610--------->ATERF1(2)                        --------->ANAC58 <-----        --------->DAG2    <---------HSFC1(2)           <---------ARR14(2)     --------->ANAC55(1)      ---------->DOF2    --------->ANAC58    ------->TEIL               --------->At4g35610    ------    --------->YAB1       --------->ANAC58  <-------TEIL--------->ARR14(2)   <---------ALFIN1 <-------   <---------YAB1  --------->At4g35610  --------->At4g35610        <---------HSFB2a(2)   ------>ZmHOX2a(2) ------GAMYB    <---------ZAT2<---------ANAC58 <---------ALFIN1    --------->HSFB2a(2)   ============   ctgttatcaaaaggctgaagctgctacaagcttcttgccggaagatgcaccatctcggttccgactctcccagtagctccacgtcacttgatcgtccagc  19313200        --------->ALFIN1 --->ZAT2 ----ZAT2                   --------->YAB1 ----->RAV1(2)<---------ARR14(2)                                                              ------- ----At4g35610--------->ARR11(3)                                                             <------- --->At4g35610--------->ARR14(2)                                                   --------->KAN4(2) ----RAV1(2) <------ZmHOX2a(1)                                                 --------->At4g35610 ===================HOX2a_HOX2a                                                <---------At4g35610   tgagatagatgtggaggattttgcgatgaagcatcacaagatggcattgttaaggggtcgaatcgaaattgagcgatgggaagctcattctcaccggtga  19313300                                      --------->GLK1(2)                                     <---------ARR11(3)                                     --------->ARR11(3)                                     <---------GLK1(2)                                    <---------RVE1(1)     <-----------GT1             --------->LBD16                              >>>>>>>GRF7 -->ALFIN1                      <---------HSFB2a(2)                        <-----------HVH21 ----HVH21                      --------->HSFB2a(2)             <---------TOE2(3) <---------GLK1(1)   ggcaatttttccattgggattgtttttcaatgttccagagattttgtttactcttgccatgtttctaatgttctctatgtcagggtttctcagtgtcgaa  19313400  Previous    Next  AGI:  At3g52030.1    Description:  F-box family protein / WD-40 repeat family protein. Identical to F-box/WD-40 repeat-containing protein At3g52030 [Arabidopsis Thaliana] (GB:Q9SV01); similar to unnamed protein product [Vitis vinifera] (GB:CAO40755.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 19312850    to: 19315205    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version