Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               --------->TOE2(3)                                                             ----------------->AGL2                                                         --------->RVE1(1)                                                  --------->ANAC46                                                  --------->ANAC58                                                  --------->ANAC58              <---------ATHB12                 --------->LBD16       ----------->GT1            --------->WOX13(1)                --------->ANAC46------>ZmHOX2a(1)                ------          <---------ATHB12                    --------->ANAC58--------------->AGL15          ========        --------->WOX13(1)                    --------->ANAC58<---------------AGL15          <-------  --------->AHL20(2)       ----------->GT1   <---------LBD16 ----------------->AGL3   --------->TOE1(2)   aaaaaaaaatcaatcaatcaaacaggcgaaggaaaaactcaattcaatccgcaagcaaaaaatcctaaaattagaaaaaaactgaaaacgaaggaacaga  19259700                     <---------At4g35610                <-------TEIL              --------->ARR11(1)              <---------GLK1(2)         ----------->RAV1(1)--------->DAG2  --------->At4g35610      --------->YAB1 --------->At4g35610 ------>ZmHOX2a(1)                        --------->AHL20(2) --->At4g35610--------->ARR14(2)        --------->TOE2(3)                    <------ZmHOX2a(1) ====================RAV   ---------->DOF2  <---------At4g35610      <<<<<<<<<<GATA-1 ----RAV1(2)  <---------ARR14(2)        --------->TOE1(3)  <-----------GT1  ----------->GT1   tgagagaataacaacagattcgaagctcaaaaagtactaaatccttagctaaaacaactattttccattgaaatcgagaggaaaataaaaactcgaatca  19259800               --------->GLK1(2)              <---------ARR14(2)                                                             --------              <---------GLK1(2)                                                              <-------              --------->ARR14(2)       <----------ID1                                   --------->CCA1(2)       --------->At4g35610         ---------->DOF2                                     --------->ARR11(1)       <---------At4g35610      <------ZmHOX2a(1)                                    ----------->ARR10 --------->ANAC58             ------------------------>ANAC81              <---------ICU4<-------TEIL --------->ANAC58    --------->LBD16   ----------->GT1               ----------->RAV1(1)--------->GLK1(2)   aacaagctaagctccagattctccccaatagagaggataaagagaaaaacgcagaaactaattcgaaacaacaacaaaaattacgaagagattcgaatcc  19259900                                                                ----------->GT1                                                             --------->MYB52(1)                                                  ------>ZmHOX2a(2)                                                 <---------GLK1(1)                                                 <------ZmHOX2a(2)                                                <---------AGP1  --------->LBD16                                                --------->ARR11(3)                                                <-----------ARR10                                                --------->ARR14(3)                                  --------->HSFB2a(2)        ------>MYB83                          --------->TOE1(3)     <---------ARR14(3)                          --------->TOE2(3)     <---------ARR11(3)               ---------->DOF2  --------->YAB1      --------->DOF5.7(2)       --------->ARR14(2)    --------->DAG2 ->ARR14(2)           <---------MYB52(1)        <---------ARR14(2)   ---------->DOF2   ---------->DOF2 --ARR14(2)        <-------TEIL   <---------HSFB2a(2)        ------>MYB46(1)   --------->YAB1     <--   aaaatcaaaacaatagagaaattcgttaccttaattcgagacgaatggaagatctcagaaacctagcggaaaaaagcagaatcaaaagaaaaagacgacg  19260000                                                                                              <------                                                                                              -------                                                                                              <------                                                                                            <--------                                                                                            ---------                                                                                 <------------CBF                                                                                 <---------ARR14(2)                                                                  <---------ANAC46          <--------                                                                  <---------ANAC55(2)       <--------                                                                  --------->ANAC55(2)     ===========                                                                  <---------ANAC58        ------>ZmHOX2a(2)                                                                  <---------ANAC58       <------ZmHOX2a(2)                                                               <---------MYB52(1)--------->ARR14(2)                                                         <-----------GT1        =================HOX2a_HOX2a                                     ---------->DOF2  <---------ICU4            ================HOX2a_HOX2a                              ------------------------>ANAC81 <-----------HVH21 <------ZmHOX2a(1)  <-                              --------->ALFIN1       <---------YAB1           <---------TOE2(2)    <-                             <------ZmHOX2a(1)  --------->CCA1(2) <---------ANAC55(1)    ============                        ----------->HVH21  ---------->DOF2--------->MYB52(1)  <---------TOE1(2)<-----                     ------>NtERF2 <------ZmHOX2a(1)<---------ANAC58        --------->TOE2(2)<------- ----ZmHOX2a(2)--------->CCA1(2)<------ZmHOX2a(1)   <---------ANAC58    *TSS--------->TOE1(2)<-------   atcagagagagagtaagagatgaggcctgaaggaggaggaaaagagaaagagatgcttattaccggttacctgttaaacctaggattggcgatcgccggt  19260100    --------->DAG2   ---------->DOF2 <------ZmHOX2a(1) ---DEAR3(2) -->LBD16 ---MYB46(3)                  <-------TEIL ---------AGL1              ------->PIF5 -------->AGL1              <-------PIF5 ---------AG               --------->ZAT2                   --------->YAB1 -LBD16                    <---------ZAT2                --------->YAB1 =======HOX2a_HOX2a       <---------TOE1(2)             <---------ATHB12 --------TOE1(3)  --------->AHL20(2)                <---------WRKY12            --------->ATHB12 --------TOE2(3)----------->GT1                     <---------WRKY38(1)       <---------MYB52(1) =======HOX2a_HOX2a      <-----------RAV1(2)       --------->WRKY18(1)       <-------GAMYB --GAMYB        --------->ANAC58          ------>ZmHOX2a(1)<---------YAB1   <---------MYB46(3)    --- --TOE1(2)      --------->ANAC58<----------DOF2  ----------->GT1         <------MYB46(1)         <--- --TOE2(2)      <---------ANAC55(2)<-----------GT1<-----------HVH21      <------MYB83  ------->TEIL   taaggaaaaggaagagtcaagtaaatcccaggtgcttttacctcctatagccggtcaaatgataatagtgaaggaaggtcgttgatttgaacgtttgcga  19260200                                                               --------->ALFIN1                                                      ----------->HVH21                                                     ------->MYC3                             -------                                                     <-------MYC3                             <------                                                    <---------TGA1a                           -------                                                    --------->TGA1a                           <------                                                    ===========================================bZIP_DOF          ------>NtERF2  --------->ARR14(1)         --------->ANAC46                         <------ZmHOX2a(1)         <----------ID1 --------->ARR11(1)          <---------O2                           <---------TOE2(3)         <---------ANAC46--------->CCA1(2)          <---------ANAC55(2)                    <---------TOE1(3)       <---------ATERF1(1)<-------TEIL              --------->ANAC55(2)             --------------->AGL15 --------->MYB52(1)     --------->ARR14(2)          --------->O2<---------MYB46(3)  <---------DAG2 ------>YAB1            <---------ARR14(2)        <-----------GT1                   <----------DOF2 ---ZmHOX2a(2)  <---------ATHB12                  <-------------DYT1            ----------->HVH21 <--   tcaaaacggttgcgccaaatcaaacagatacgataagggatgcgactaaaattcacgtgactagtgtggttcttatatgggcctgactttattaaggata  19260300                                                                     --------->ARR11(3)                                                                    --------->YAB1                                                          <----------DOF2                                                      <---------ARR14(2)                                                      --------->ARR14(2)                   --------->ATHB12   <---------ANAC46                                   <---------GLK1(2)                    <---------ICU4 -->ARR11(3)                                         <------ZmHOX2a(1)   <-----------RAV1(1) <------- ---ARR11(3)                                       <---------TOE2(3)<--------ATHB1         -------->ATHB1 -->ARR14(2)                                  --------->YAB1       <---------ATHB12        --------->ATHB51 ---ARR14(2)                                  <---------ICU4       --------->ICU4         --------->ICU4 ---------RAV1(1)     <----------DOF2        --------->ICU4    --------->MYB46(3)         <---------ATHB51   ttgttgggcatattatgggccagactttaatccatagctaagagagaataatgaaggattctttaaccaatgattttgttgctcaaaactgaattattgt  19260400                                                                    <---------MYB52(1)         <-----                                              --------->MYB52(1)  <-----------RAV1(1)          ------                                              ------>MYB46(1)  <---------ARR14(2)              <-----         <---------YAB1                       ------>MYB83     --------->GLK1(2)               ------     --------->GLK1(2)                      <---------MYB59    --------->ARR14(2)              ------    --------->YAB1                        >>>>>>>>>>MYB80      <---------ARR11(3)              <-----  --------->ANAC58               --------->ANAC46              --------->ARR11(3)     <---------AHL20(2)  --------->ANAC58               --------->ANAC58       <---------At4g35610          <----------DOF2< --YAB1--------->YAB1            --------->ANAC58       --------->At4g35610       ----------->GT1  --   tcacaagaatcatgtttctatctaattcaaactatacgaaatcaaaccaaactgatatagctgaaaatctgttgtgcttctggccggttttattgaatat  19260500           ---------->DOF2        --------->TOE2(3)               <---------------------WRI1      <-------TEIL                   ------>MYB46(1) ----AHL20(2)                        ------>MYB83 --->AHL20(2)                       ----------->RAV1(1) ----AHL20(1)                       <<<<<<<<<<<<<<<<<LFY                                          <-- --->ARR11(3)                     --------->MYB46(3)                                              --- --->AHL20(1)                     ----------------->AGL2      --------->YAB1                     ---- ----ARR11(3)               <---------------------WRI1  --------->ANAC58                         ---- ---------AHL20(2)       <---------ANAC46          ---------->DOF2                               ---- ------->AHL20(2)        --------->ALFIN1 --------->YAB1--------->ANAC58                     <-------   attatatatacatcaaagtagaaaactgtgtgggaaaccaacaatggtaagaccaaagacgaaatcaaaacaaacaatagtcgagactgaacatgaggga  19260600  Previous    Next  AGI:  At3g51880.1    Description:  HMGB1 (HIGH MOBILITY GROUP B 1); transcription factor. similar to HMGB3 (HIGH MOBILITY GROUP B 3) [Arabidopsis thaliana] (TAIR:AT1G20696.3); similar to HMGB3 (HIGH MOBILITY GROUP B 3), transcription factor [Arabidopsis thaliana] (TAIR:AT1G20696.1); similar to HMG-protein [Plantago major] (GB:CAJ38371.1); contains InterPro domain High mobility group box, HMG1/HMG2; (InterPro:IPR000910); contains InterPro domain High mobility group box, HMG (InterPro:IPR009071) Range:  from: 19257968    to: 19260072    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g51890.1    Description:  protein binding / protein transporter/ structural molecule. similar to protein binding / protein transporter/ structural molecule [Arabidopsis thaliana] (TAIR:AT2G40060.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69697.1); contains InterPro domain Clathrin light chain; (InterPro:IPR000996) Range:  from: 19260457    to: 19261952    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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