Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                  --------->At4g35610                                <---------At4g35610                                <---------ANAC55(2)                                <---------TGA1a                                --------->O2                         <---------ANAC58                         <---------ANAC46                    --------->At4g35610                    <---------ATERF1(1)                    <---------At4g35610                    --------->GLK1(1)                    <------MYB83--------->ANAC55(2)   <------NtERF2                    <------MYB46(1)                  <---------RAP2.6(3)                   --------->MYB55(2)                <---------SPL7                   --------->ALFIN1                  ------>NtERF2                   <---------MYB46(3)                <-----------HVH21                  <---------MYB55(1)                =========================================bZIP_DOF               --------->MYB46(3)                   =======================MYC_MYB               --------->DEAR3(1)                   --------->DEAR3(1)               --------->DREB2C(2)                  <---------TGA1a     <---------ANAC58    <---------ANAC58           --------->ATERF1(2)     <---------ANAC58  ------>NtERF2                <---------ANAC46  <---------ALFIN1   <---------YAB1----------->RAV1(2)                <---------ATERF1(2) ------->GT1 --------->MYB52(1) =========================MYC_MYB   --------->ANAC58 -->ZAT2    <---------ALFIN1<-----------HVH21    ------->GAMYB     --------->ANAC46 ---ZAT2    --------->AtMYB61   <---------O2    --------->MYB46(3) ------->GAMYB  ---------->DOF2 ->GLK1(2) <---------MYB55(2)  >>>>>>>GRF7    <-----------GT1      --------->ANAC58                 - >DOF2     --------->MYB46(3) <-----------RAV1(2)=============MYC_MYB ----------->RAV1(1)--------->GLK1(2)   ggttaatgcttgaaccaccggctggtgccttgtcaggtgtctgagatttaactgccgtcggaaattcaaacgccacagtgtttgaaaagagaattttgaa  19229600                                                              ----------->RAV1(1)                                                           --------->ANAC46                                                         --------->ANAC58                                                         --------->ANAC58                                                         --------->ANAC46                                                        --------->SPL7                                                       <---------ALFIN1                                                      ------>NtERF2                                                      <---------SPL7                                                      <------NtERF2                                                      --------->ABI4(1)                                                     --------->DEAR3(1)                                                     --------->RAP2.3(2)                                                    --------->ANAC46                              <--                                                   <---------ATERF1(1)                --------->CCA1(2)                                                   --------->At4g35610               --------->ARR14(2)                                                   ------>NtERF2                     <---------ARR11(3)                                                  --------->DEAR3(1)                 --------->AGP1 -                                     --------->ZAT6--------->LBD16                  <---------GLK1(1)                                    <---------YAB1--------->ANAC46          <---------SPL7       ----                                <---------DAG2   --------->ATERF1(1)     ------>NtERF2<------ZmHOX2a(2)                                <----------DOF2  <---------LBD16   --------->ARR14(2)<---------ARR14(2)                               --------------->AGL15--------->RAP2.3(1) --------->DEAR3(1)       <---        --------->AHL20(2)     <---------------AGL15--------->ATERF1(1) --------->ANAC46  --------->ANAC46  ----------->GT1              --------->TOE2(3)<---------ATERF1(1)<---------ARR14(2)--------->ARR11(3) ---------->GT1           --------->YAB1       --------->ARR14(2)  <-----------ARR10--------->GLK1(1)   gagagagaaaataaaaacaactaaaaaatcatacctttatcagtatcagtctccgccgcacgcacaacaaatctccgccctacgagagatccacaacaag  19229700                                                                                                  <--                                                                                                 ----                                                       --------->MYB52(1)                        <---                                                       -------->P <---------ANAC46              -----                                                      --------->MYB55(1)                        -----                                                     <---------MYB111(1)                        <----                                                     <---------MYB52(2)                        ------                                                     --------->MYB46(3)                        <-----                                                     <---------MYB111(2)                       <-----             XXXXXXXXXXXXXXXXXXXXX>MIR2933A/B        <---------MYB46(2) <------ZmHOX2a(2)      ------         --------->AHL20(2)             --------->MYB52(1)--------->LBD16                     ------- ----ZmHOX2a(2)                         ----------->RAV1(1)   <---------MYB46(3)--------->HSFB2a(2) ---------->GT1                --------->WOX13(1)    <---------MYB55(2)--------->ARR11(3)     <------ ----->ARR11(3)            --------->YAB1  ------->GAMYB <---------ANAC46       <---------HSFB2a(2) ------ARR11(3)           <-------TEIL--------->MYB46(3)<---------LBD16<---------ARR11(3) ---------->DOF2   atcagtaaaaaaaaaatcgaagaaaacattcatcaatctatccaacagaatgctaactaccgggtgattcgtagatcaacgtcgagaaaccagaacgccg  19229800   <---------ZAT18   <---------ZAT14   --------->ZAT14   --------->ZAT18 -------ANAC46 ----->ATERF1(1) ---NtERF2           --------->GLK1(1)                           <---------HSFB2a(2) ---->LBD16 ------->GAMYB --------->LBD16                        --------->HSFB2a(2)      <---------ZAT14 ->NtERF2  --------->ANAC46                                     <---------LBD16         >>>>>>>>>TAC1 -----ATERF1(1)      <---------ARR14(2)                       --------->ZAT6    <---------ANAC46 --->DEAR3(1)        --------->ARR14(2)             <---------LBD16           <---------MYB46(3) ----DEAR3(1)        <---------GLK1(1)            --------->ETT(2)            <------MYB83--------->ZAT14 ----ATERF1(2) --------->GLK1(2)                  ----------->HVH21           <------MYB46(1) --->ATERF1(2) --------->ARR14(2)                 <---------ETT(2)           <---------AtMYB61 -->ATERF1(1)  <---------ARR14(2)         ------>NtERF2  ----------->GT1  <---------MYB46(3)     ---- ---LBD16--------->MYB52(1)         <------ZmHOX2a(1)   <---------TOE2(2)--------->ALFIN1--------->ALFIN1   gcgagtgaactcaacggaatccgaattccgaagagagaggactccgactcgatcgacggaggtaactctggaagagtggatggtggagacagtgttgaga  19229900                                                                                          --------->LBD16                                                                                         --------->HSFB2a(2)                                                                                         <---------HSFB2a(2)                           --------->ARR14(2)                                           <---------ANAC46                           --------->GLK1(2)                     <---------ANAC58       <---------LBD16                           <-----------ARR10                  <---------AtMYB61        <---------LBD16                           <---------ARR14(2)                 --------->ALFIN1     <----------DOF2                          <---------GLK1(2)                 <---------ANAC58       --------------->AGL15                --------->ANAC58                    <------NtERF2<---------ANAC46  <---------------AGL15                --------->ANAC58                 <---------LBD16 <---------ANAC58 <-----------------AGL2             ----------->HVH21            <---------MYB46(3)<---------ANAC46      <-----------------AGL1             --------->DEAR3(1)          <--------P--------->LBD16                ----------------->AGL1            --------->DEAR3(2)         <---------MYB46(3)   <---------ANAC58  <---------At4g35610   <            --------->MYB46(3)        <---------AtMYB61   <---------ZAT14     <-------GAMYB        -- ----->GLK1(2)--------->MYB52(1)   <-----------RAV1(1)    --------->ZAT14    --------->MYB52(2)    <-   atcgaagtcatagaaccgacggaagagagaatcgtctctggtggtagttaagccggagactggagtggtgtgagtctgtgagttgctgtttcgggaaacg  19230000                                                                               <---------ARR11(3)                                                                               <---------ARR14(2)                                                                             --------->ANAC58                                                                       ------->MYC3                                                                       <-------MYC3                                                                      ===============================                                                                      <-----------RAV1(1)                                                         ------------>CBF    --------->ANAC58                                                   =============================bZIP_DOF                                                   <----------DOF2    --------->PIF3(3)              --------->LBD16                   ------>NtERF2         <---------PIF3(3)            <---------LBD16                    ------>NtERF2  --------->MYB52(1)<------ZmHOX2a(2)           <---------DOF5.7(2)                 <---------RAP2.3(1)    <---------O2           --------->MYB52(1)                 <---------DEAR3(1)================MYC_MYB         <---------MYB52(1)                   <---------ATERF1(2)     --------->TGA1a         --------->DOF5.7(2)      *TSS        <---------RAP2.3(3)     --------->O2 ------>ZmHOX2a(1)        <-----------HVH21       --------->ANAC46<------NtERF2 <---------ICU4 ----------->ARR10        <-------GAMYB<---------ANAC55(2)      <---------RAP2.3(2)     <---------TGA1a ---------MYB46(3)   --------->ANAC55(2)      <---------RAP2.6(2)===============MYC_MYB ------->ALFIN1      --------->ANAC58         --------->ATERF1(2)------->GAMYB --------->ARR14(2) --------AtMYB61     --------->ANAC58        --------->RAP2.6(3)<------------AtMYB77    ------------>CBF   agtggttgtccgttaccggagataagtaatgtctacgttacagttttggcggcctttgattcaataactgccatgtggcacgatcctcttggcaatacta  19230100                                                           --------->AHL20(2)                                                       ----------->GT1            --------->MYB52(2)                       <---------LBD16          <---------MYB52(1)                       --------->TCP20      <-------GAMYB                       --------->At4g35610    <---------ANAC46               --------->ATHB12--------->TCP16(1)    --------->ETT(1)          <---------ARR11(3)   --------->TCP15(1)  <-----------HVH21           --------->ARR11(3)   --------->PCF5                                 --- <-----------RAV1(1)         <------ZmHOX2a(1)     <---------PCF2                             ------- <---------ANAC46<-----------RAV1(1)   ---------->DOF2<------NtERF2                     <---------TOE2(3) =============MYC_MYB    ---------->DOF2  <---------At4g35610     ---------->DOF2       <---------TOE1(3)   gttgtgtcggatgttagttttgttggacaaaggaccttcattgaagcagaatgggcccggtttaaatccaaagcccaaacaaaacccattagggtttcat  19230200                                                                                           --------->YAB1                                                                                          <---------ATHB12                                                                                   ----------->GT1                                                                                  --------->LBD16                                                                                 <---------ANAC46                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                              <---------AHL20(2)<---------LBD16<-----                                                            --------->AHL20(2) --------->MYB52(1)  --                                                            <---------AHL20(2)<-----------GT1 -------          --------->PCF2                                    <---------YAB1   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          --------->TCP20                         <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------At4g35610                             --------->AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->At4g35610                         --------->AHL20(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------->DOF2     --------->AHL20(2)---------->DOF2        --------->YAB1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -->ATHB12<---------PCF2      ----------------->AGL3       --------->TOE2(3)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   tgaagcagaatgggcccagtttaaatcgaaaacccaaataaagcccaaaaaataaatctaatattaatatgggatgatatataccgggtgaaatcataaa  19230300                                                                    <---------YAB1                <--                                                                    --------->AHL20(2)           ----        --------->AHL20(2)                                          <---------AHL20(2)        -------       --------->YAB1                                              <---------AHL20(1)         -------       --------->AHL20(2)                                          --------->AHL20(1)        <-------   --------->ZAT6                                   --------->YAB1 --------->AHL20(2)     --------->AHL20(2) <-----------GT1                      --------->MYB46(3)      --------->AHL20(2)          <---------AHL20(2) ----AHL20(2)                 ---------->DOF2 --------->MYB52(1)  --------->YAB1    <---------ARR11(1) ------->AHL20(2)         --------->YAB1    <---------MYB52(2)<---------AHL20(2)    --------->ARR11(3) -->AHL20(2)        --------->ANAC46--------->MYB52(1) <-----------GT1             <---------CCA1(2)   atttaacaataaaaatacaaatacacaattttaaaagctaaccaaaactaacaatattaacaaaataaatataatttcaaatttcaaatcttttaattat  19230400                                                                          --------->ZAT6                                                                   --------->LBD16                                                                  <---------LBD16                                                                  <---------HSFB2a(2)      --------->HSFB2a(2)    --------->YAB1                       --------->HSFB2a(2) -------AHL20(2)            <---------AHL20(2)                   <---------LBD16 ----->AHL20(2)          <---------AHL20(2)<---------ARR11(3)    <---------ANAC46              ------ -->YAB1                --------->AHL20(2) --------->ARR11(3)   <---------LBD16               ------- -->AHL20(2)     --------->YAB1     --------->AHL20(2)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <--- --YAB1--------->LBD16--------->TOE2(3)   <---------CCA1(2) <---------ARR11(3)                <------   aaaatcatcccgaattgtatcatacattaaataatcaataacatatatctatagttgctcaataccttcggggattactctactacataagtcgtcttga  19230500  Previous    Next  AGI:  At3g51820.1    Description:  ATG4/CHLG/G4 (CHLOROPHYLL SYNTHASE); chlorophyll synthetase. Identical to Chlorophyll synthase, chloroplast precursor (CHLG) [Arabidopsis Thaliana] (GB:Q38833); similar to ATHST, prenyltransferase [Arabidopsis thaliana] (TAIR:AT3G11945.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO50119.1); contains InterPro domain UbiA prenyltransferase; (InterPro:IPR000537); contains InterPro domain Bacteriochlorophyll/chlorophyll synthetase; (InterPro:IPR006372); contains InterPro domain Chlorophyll synthase, ChlG (InterPro:IPR011799) Range:  from: 19226980    to: 19230034    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version