Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100       <---------DAG2                                               <-------TEIL     <----------DOF2                                             --------->CCA1(2) -----AGP1            --------->ARR11(3)                  --------->HSFC1(1) --HSFB2a(2)      ---------->DOF2        ---------->DOF2  <---------HSFB2a(2) ->HSFB2a(2)   --------->ANAC58        <---------At4g35610<---------HSFC1(1)                  ------- --HSFC1(1)    --------->ANAC58        --------->At4g35610--------->HSFB2a(2)      <-----------GT1 ->HSFC1(1)  ---------->DOF2 <---------DOF5.7(2)         <---------ANAC46       --------------->AtSPL8   actggagctttatgtgaaagcaaagacctggtaacgttttcagcaaagtcatatatgtttcgagaagattcaaactcgagtctttgtaccattttccaaa  19125200                                                                                               <-----                                                                                         ------->GAMYB                                                                       --------->ANAC58 <---------MYB52(2)                                                                       --------->ANAC58--------->At4g35610                                 ----------->HVH21            <---------ARR11(3)   --------->ANAC46                               --------->CCA1(2)              --------->GLK1(2)    --------->ANAC58                              <---------ARR14(2)              --------->ARR14(2)   --------->ANAC58                              --------->ARR14(2)              <---------ARR14(2) <-----------RAV1(2) --->DOF2                  <---------ANAC46     <------ZmHOX2a(1) --------->At4g35610  <---------At4g35610   gagatagccatcgtttggacaaaacacttgtggatatgacaagttttgtaggaagtgaagacagtatctgcagaagcaaaacttcaggcaactcactgat  19125300                                                      <---------TOE2(3)                                <----------DOF2 --------->AHL20(2)                          --------->HSFB2a(2)   <---------AHL20(2)                          --------->HSFC1(1)   <---------AHL20(1)            <---------GLK1(2)                          <---------HSFB2a(2)  --------->AHL20(1)      <---------MYB46(3)                      <----------DOF2          --------->AHL20(2)     <---------TOE1(2)                     <---------ANAC58          <---------AHL20(2)     <---------TOE2(2)         --------->YAB1   <---------HSFC1(1)--------->YAB1         <---------ANAC46       -----------    ------>ZmHOX2a(1)<---------ANAC58     --------->AHL20(2) <---------TOE2(3)     ---------->DOF2 ----GLK1(2)    ----------->RAV1(2)   --------------->AGL15  <---------TOE1(3)   <---------YAB1------   tctgtcctcactcataaaacctggctttctcgaacttttgccactaaaataaaattaagaattagggtttcggaggttagattattaaagaacagttcaa  19125400                                                      <---------ARR11(3)                                                      --------->GLK1(2)                                                      --------->ARR11(3)                                               <---------At4g35610                                               --------->At4g35610                 <---------MYB46(3)                                            <---------At4g35610                    <---------DEAR3(2)               <----------ID1               --------->At4g35610     <-----------GT1<------MYB46(1) <------ZmHOX2a(1)<---------MYB52(2)     <----------DOF2       <---------GLK1(2)   <------MYB83 >GT1        ----------->GT1            <---------ANAC58    --------->HSFB2a(2)  <--------P ---->DOF2 ---------->DOF2              <---------ANAC58    --------->YAB1  --------->LBD16       ---   agaggatgcagagaaaagaaacaaacccttgttccatcaatggctttgctgcagaaaatctttcagaatttttcattccccaagttggttcccagtgata  19125500                                                                        --------->CCA1(2)                        --------->MYB52(1)                          <------NtERF2                  --------->ANAC46                                  <---------------------WRI1                  --------->ANAC58                                 ------>NtERF2           --------->ANAC46                                       <---------DEAR3(1)           --------->ANAC58   --------->YAB1                     --------->ATERF1(1)             ----           --------->ANAC58  <------ZmHOX2a(2)                  <---------ATERF1(1)              <---         --------->ZAT6 --------->YAB1                          ------>NtERF2                   -----         <---------ALFIN1  ------->GAMYB                       --------->DEAR3(1)               <----   --------->AtLEC2    --------->ICU4                          ----------->HVH21            --------- ------>YAB1      --------->ANAC58     ------->TEIL      --------->TOE1(2)               ----------->GT1   tcgtaatgcaaacactccaaacgcaataacgatcaaaactgaacctgttgtgagagagacatacgacgacggcgatatgactagagaagaacgattaaaa  19125600                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               <-----                                                    --------->YAB1                             <-----                                                  <------------CBF                             ------                      *TSS                      <---------AHL20(2)                       ------>MYB83            ----------->TGA1                    <---------YAB1                --------->ICU4  <------ ----->AHL20(2)<---------ETT(2)          <-------TEIL                  <XXXXXXXXXXXXXXXXXXXXMIR1886.3 ------AHL20(2)<----------ID1            ------>ZmHOX2a(2)            <---------TOE1(3)  ------>MYB46(1) ---->AHL20(2) --------->bZIP60(1)      <------ZmHOX2a(2)             <---------TOE2(3)  --------->MYB52(1) -----AHL20(2) <---------bZIP60(1)     --------->ARR14(2)             <---------AtMYB61<---------MYB59 >AHL20(2)  ----------->HVH21          <---------ARR14(2)             --------->DAG2<-----------GT1   aaatttggagacggatgacgacaactgttgagaaaattagggatccatttttaattgtaaaccggttttgttaaggtggaatttttaaaccgaaccgaat  19125700                                 <------MYB46(1)                                 <------MYB83          --------->MYB46(3)     <---------MYB46(3)                     ----------->GT1      <------ZmHOX2a(2)        <---------MYB55(1)     --------->YAB1------>MYB83     <-----------HVH21  <----------DOF2        <---------ZAT2       ------>MYB46(1) --------->ZAT6        <---------ANAC58--------->AHL20(2)           -------->P ->TEIL  --------->At4g35610   <--------P      --------->ZAT2     --------->DEAR3(1) ----ARR14(2)  --------->YAB1  <---------MYB52(1)  <---------HSFB2a(2)  --------->LBD16 --->ARR14(2) <---------ATHB12<-------GAMYB    <---------At4g35610<---------MYB46(2) ----ARR11(1) --------->MYB46(3)<---------AtMYB61  --------->HSFB2a(2)<---------LBD16  --------->ATHB12 ------ARR10 -------->P<---------ANAC58<---------AHL20(2)    --------->YAB1     <---------ICU4 --->GLK1(2) ------>MYB46(1)  <---------MYB52(1)--------->AGP1   --------->DEAR3(2)   --------->ICU4 ---ARR14(1) ------>MYB83  <---------LBD16     --------->At4g35610--------->MYB46(3)----------->GT1   ctaacacgatcagccaaccatggttactttccggttggtttttaaatccagctctagaataaatgataccgacccggtttaataagtagtgatttgaaat  19125800                        ----------->GT1                        <------MYB83                        <---------MYB46(3)                        <------MYB46(1)        ---------->DOF2                     <---------MYB52(1)      --------->ANAC58                   <---------ANAC58          --------->ANAC58                                       <                   <---------ANAC58          --------->ANAC46                                <-------              --------->ARR14(2)           --------->ZAT6        --------->YAB1              <-------              <---------ARR11(3)         <-----------GT1       --------->GLK1(2)            <--------              --------->ARR11(3)   <---------AHL20(2)     ------->GAMYB                     ---------              <---------GLK1(2)   --------->AHL20(2)   ----------->RAV1(1)                  ---------              <---------ARR14(2)  <---------AHL20(2)  --------->REM1(1)         <---------LBD16  ----   atagaccccttaaacagattttcgtttggttacaaattttttttaacacgaaagcttcaacagagaatcagaagctattttcttcggaattgaatataat  19125900    <----------DOF2                                                                           <------   <---------DAG2                                                                             <------ -----------GT1               --------->LBD16                                                 ------- --YAB1                     <---------LBD16                                           --------->MYB52(1) --AHL20(2)               --------->ARR14(2)                                      --------->ANAC58 -AHL20(1)                <---------ARR14(2)                                      --------->ANAC58 >AHL20(1)             --------->AHL20(2)                                       ---------->DOF2 >AHL20(2)       <xxxxxxxxxxxxxxxxsmallRNA(i)            ----------->GT1     <-----------ARR10------- ----->YAB1   <----------DOF2 <---------LBD16        --------->DAG2        <------NtERF2     --------   tgtaaccttttggcatctttgtgaaataaatccgcggtatagttgtatttttgaaaaattggtaaacagaaattggccgaatcaaagcaaaccgaataaa  19126000                                                                                  <-----------TGA1                                                                                 --------->ANAC55(2)                                                                     <---------TGA1a       <---------AHL20(2)                                                                     --------->ANAC58     <---------AHL20(2)                                                                     --------->TGA1a      <---------AHL20(1)                                                          <---------ARR14(2)     --------->ANAC46                                                          --------->ARR11(3)     --------->ANAC58                                                     ----------->RAV1(1)         --------->ANAC55(1)                                                   --------->SPL7    <---------ANAC55(2)  --------->AHL20(1)                                                   <---------ZAT14   ======================bZIP_bZIP                                                   --------->ZAT14   --------->ANAC58     --------->AHL20(2)          --------->AHL20(2)                     --------->LBD16     --------->O2--------->O2          <---------AHL20(2)                    <---------ANAC58     <---------O2--------->bZIP60(2) <---------GLK1(2)                              <---------ANAC46   <---------ALFIN1     <XXXXXXXXXXXX ---AHL20(1)                                    <---------ANAC58----------->HVH21--------->TGA1a ---AHL20(2)                                 <-----------GT1<------------CBF     --------->ANAC58 -->AHL20(2)              <-------MYC3  =======================================bZIP_DOF--------->AHL20(2) -->AHL20(1)              ------->MYC3  <---------DAG2<---------At4g35610        <---------O2    <--- ->AHL20(2)            <---------ALFIN1 <----------DOF2   --------->ARR14(2) <-----------GT1     ----   ttagattatcaaataaatgtaacacacacatgtagataactactttatttccgtgcagcatatattgtgacacgtctatttacacgtcataatataatca  19126100  Previous    Next  AGI:  At3g51530.1    Description:  F-box family protein. Identical to F-box/FBD/LRR-repeat protein At3g51530 [Arabidopsis Thaliana] (GB:Q501E9;GB:Q9SCZ6); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G52680.1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G52680.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 19123673    to: 19125622    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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