Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            <-------GAMYB                                                               <----------DOF2                                                          <------ZmHOX2a(2)                                                         <---------ARR11(3)                                                         --------->ARR11(3)                                                        <------ZmHOX2a(1)<---------MYB46(3)   -------                                                <---------------AGL15   <---------AtMYB61     <------                     <---------TOE2(3)         <-----------------AGL2 <---------ANAC46        -------                 <----------DOF2      <---------ICU4  <---------TOE2(3) <---------TOE2(3)     -------            <----------DOF2       <-----------GT1   ---------->DOF2<-----------RAV1(1)        -------       <----------DOF2     ----------->GT1   --------->AtLEC2<---------YAB1                   -------   attgaatttcttttcttttctttgaggtcatgttattaactcattacatgctaataaaggatcatctttgtgttgtggttgtgcaaacagggagtcacga  19103100                                                                           <---------YAB1                                                                     <---------AGP1                                                                     <---------ARR14(2)                                                                     --------->ARR14(2)                                                                     --------->ARR11(3)                                                                     <---------ARR11(3)                                                                    <---------CCA1(2)        --------->ARR11(3)                                      <---------ANAC58        <---------ARR11(3)                                      <---------ANAC58        <---------ARR14(2)         --------->ARR14(2)           <---------ANAC46 -->ANAC46                        <------ZmHOX2a(1)          <---------DEAR3(1) ---bZIP60(1)                   <---------TOE2(3)           --------->SPL7<---------TOE1(2)        <- -->ANAC58                  <---------ANAC58        <---------MYB46(3)    <---------TOE2(2)      <--- -->bZIP60(2)               <---------ANAC58       <---------RAP2.6(2) ------>ZmHOX2a(2)      <------ -->bZIP60(1)            <----------DOF2        <---------AtMYB61 <------NtERF2               <------ -->ANAC58          <-----------GT1<---------ARR14(2)<------NtERF2--------->ALFIN1        <----------   cattgtggaatatctcgttgaaataccctttcttgaggaaactcacagcaatggtggctaagtacggcgtggatcttatgtttatggagaatgcaggcgt  19103200                                                                           --------->ATHB12                                                                        <-----------------AGL1                                                                        ----------------->AGL1                                                                     ----------->HVH21                                --------->SPL7                     <---------O2                              --------->ZAT18                      --------->O2        --------->ARR14(2)    <---------ZAT18                      <---------TGA1a        <---------ARR14(2)   <---------ANAC46                      --------->TGA1a <-----------RAV1(2)         --------->ANAC55(2)                  ------->MYC3 ----------GT1               <---------ANAC58                     <-------MYC3        <---------ARR11(3) -------DOF2                 <---------ANAC55(2)                 <---------O2         --------->ARR11(3) ---ANAC58         --------->GLK1(1)       ------>ZmHOX2a(2)     <---------TGA1a     --------->RVE1(1) ---ANAC58         <---------GLK1(1) --------->YAB1              --------->TGA1a     --------->CCA1(1) -RAV1(2)    <---------AtLEC2<---------ANAC58                    --------->O2  ----------->GT1   tttacaggtggatttggatggaaatcccatcgcgtactaccatgatccaaaactctctcacatagccacatgtgacaagattgggaaatatctctattgt  19103300                                                --------->ZAT14                                     <                      ==================HOX2a_HOX2a                                                 -                      ------>ZmHOX2a(1)         <---------ZAT14                                     <                     --------->TOE2(2)         ------>ZmHOX2a(1)                                    <                     --------->TOE1(2)     --------->ARR11(3)                                       -                  <---------ARR14(2)       <---------ARR14(2)                                       <                  --------->ARR14(2)       <---------ARR11(3)                                       -                 --------->GLK1(1)         --------->ARR14(2)                                       -                 <---------GLK1(1)        --------->CCA1(1)                                       <--                 <---------CCA1(2)   ------>ZmHOX2a(1)                                       --------               --------->ANAC55(2)   --------->LBD16                                <---------------AGL15               <---------ANAC55(2) <---------LBD16                                 ==================             --------->YAB1        ----------->RAV1(2)    --------->ANAC46         <-----------------AG            <---------ATHB12     ------>ZmHOX2a(2)        --------->ANAC58         <-----------------AGL1          --------->WOX13(1)     =====================HOX2a_HOX2a                  --------------->AGL15       --------->ANAC58         <---------GLK1(1)         --------->ANAC58         ==================       --------->ANAC46        <---------ARR11(3)  --------->ANAC46         <---------YAB1  <------ZmHOX2a(1)       --------->ANAC58  ------>NtERF2    --------->RVE1(1)             --------->AHL20(1)<---------TOE2(3)   ggaagtctctcgcaatcacatatcctccgacttgatctcctgaaatatcctgcacagaacaagaaactttgaaatattatgttttcacaaataaggaaag  19103400       <---------TOE2(3) <---------------AGL15 --------------->AGL15 -----------------AGL1 ---------------->AG -----------------AGL3 -----------------AG <---------At5g28300 ---------------->AGL2                                                ------->TEIL -----------------AGL2                                          --------->ATHB12 ---------------->AGL3                                         <---------YAB1 ---------------->AGL1  <-----------HVH21                      --------->ICU4  <--------------------- ---------GT1<------ZmHOX2a(1)                               --------->YAB1   <---------------------- -->DOF2 <------ZmHOX2a(1)                                  --------->ICU4 <----------DOF2 ================MADS_MADS                        ------>ZmHOX2a(1)  <---------CCA1(2)           *TSS =================MADS_MADS        ----------->GT1--------->LBD16<------------CBF             -------   tttccattttaggaaggagcattcactgtcacaaaaaatgtaaactcatttcctgagaatgaatgatgattgtatctcttttttttttttttttttgtct  19103500                                                                    <---------AHL20(2)      <---------ARR14(2)                                          <---------------AGL15    <---------TOE1(2)                                             <----------DOF2          <---------AHL20(2)    <---------TOE2(2)                 --------->STY1(2)          ==================================== <---------ANAC46        ---------->DOF2                         <-----------------AGL3    --------->AHL20(2) ---ANAC81             <---------HSFB2a(2) --------->YAB1  <---------YAB1                <----------- --ANAC81     --------->ATHB12  --------->ARR14(2)      <---------YAB1            <-------TEIL --->ID1     <---------YAB1     <---------ARR14(2)    <---------ZAT6--------->AHL20(2)   <----------DOF2   ctctcgtagatttgtatcattgattccaaaagcatatactatctagcatgatgtgagtgttattgttcctttaattagactcgatacattcctttaatta  19103600                    <---------ICU4            ---------->DOF2           --------->AHL20(2)           <---------AHL20(2)                                                  ----------->HVH21        --------->ATHB51                                                      <-----------HVH21        <---------ICU4                                                      --------->TOE2(2)        <--------HAHB4                                                      --------->TOE1(2)       <---------YAB1                                         <---------ANAC55(2)                <---       --------->ICU4  <-----------GT1                 ----------->GT1     ----------->RAV1(2)   ----     --------->YAB1 --------->YAB1                --------->AHL20(2)      ------->TEIL           ---- ====MADS_MADS     --------->ICU4                 <---------AHL20(2) --------->GLK1(2)           <--- ----AGL15<---------YAB1 --------->ZAT6   ---------->DOF2     --------->ANAC55(2)   <----------DOF2   gacttggtcataattaaaggaataataacactctgtgatatatgaaaagcatataaatggtattaagtaagaatcgaacctgtgacctttaagaagttaa  19103700                                                                                               ------                                                                                               ------                                                                                               ------                                                                                              <------                                                                                         ------->PIF5                                                                                         <-------MYC4                                                                        --------->ANAC46 <-------MYC2         --------->DAG2         <---------ATHB12                        --------->ANAC58 <-------MYC3       ---------->DOF2      <---------ZAT18                             --------->ANAC58 ------->MYC3  <---------ANAC46        <---------SPL7                               <---------TOE2(3) <-------PIF5  <---------ANAC58    <---------MYB46(3)                         <---------ATHB12        ------->MYC2  <---------ANAC58   --------->ALFIN1                         --------->TOE1(2)         --------->ANAC58 ------ZAT2          <---------AtMYB61                       --------->MYB46(3)        <---------TOE1(2) ----->ZAT2 --------->ALFIN1--------->ZAT18                  ------>ZmHOX2a(2)<---------ARR11(3) ----->At4g35610   <---------ANAC46                  <------ZmHOX2a(1)--------->MYB52(1)--------->ANAC58 ------At4g35610   <---------bZIP60(2)   <-------TEIL===============HOX2a_HOX2a --------->ATHB12   --   gctggcttggaaaggtgtatgaggtggtcgtccactaattagattcagagagtcaggacttgatccaacgattaacgcaaaatcatttgcacgttctacg  19103800                                                            <---------ZAT2                                                            --------->At4g35610                                                   <----------DOF2                                              <------ZmHOX2a(2)                                             --------->ARR14(2)                                             --------->AGP1 --------->ZAT2                                             <---------ARR14(2)                                             <-----------ARR10                                      --------->HSFC1(2)  <---------ALFIN1                               --------->ANAC46------>ZmHOX2a(2)                              <---------LBD16--------->ARR11(3)        ------>ZmHOX2a(2)      <---------ICU4<---------HSFB2a(2)      <---------ARR11(3)      --------->ARR11(3)      --------->ATHB51        <---------At5g28300  <---------DAG2    <---------ARR11(3)           <-- --->ANAC46         --------->HSFB2a(2)      <---------AGP1 <---------At4g35610                  ---- --->ANAC58       ====================================HOX2a_HOX2a<---------At4g35610            ----- --->ANAC58       ===================================HOX2a_HOX2a --------->At4g35610           <----- ---LBD16<-----------GT1   <-----------HVH21<---------CCA1(2)  <-----------RAV1(2)            <------ ------->GLK1(1)  ------>ZmHOX2a(1)   <---------HSFC1(2) --------->LBD16<----------DOF2--------->YAB1   caactccataatttcaattcctctcgacgtttcacggcgaagcttcagatctacttttccccagctcaggtgatcttttccatcttccatcatcttcgtt  19103900                                                    <---------ARR14(2)                              -           <---------ARR11(3)                       --------->ARR14(2)                             <- <-----------HVH21                           <---------GLK1(1)                                     -- -------At4g35610                         <---------YAB1                                           <- ----->MYB52(2)                       <----------DOF2                                          <----- ---->SPL7 --------->ARR11(3)         <---------DAG2------->TEIL                           <-------GAMYB ----MYB52(1)     <<<<<<<<<TBF1      --------->TOE2(3)    <----------DOF2                 <---------MYB46(3) ---SPL7<---------GLK1(2)       <----------DOF2    <---------CCA1(2)                      -----------   cgctgttagagattatcttcttcttcgtcttcgtcttttcctttacgatttctgaatcttcttttgtctcttgtttgattttagtatggagacggttgat  19104000  Previous    Next  AGI:  At3g51450.1    Description:  strictosidine synthase family protein. similar to YLS2 (yellow-leaf-specific gene 2), strictosidine synthase [Arabidopsis thaliana] (TAIR:AT3G51430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42645.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141); contains InterPro domain Six-bladed beta-propeller, TolB-like (InterPro:IPR011042) Range:  from: 19101926    to: 19103488    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g51460.1    Description:  phosphoinositide phosphatase family protein. similar to ATSAC1B/IBS2 (IMPAIRED IN BABA-INDUCED STERILITY 2), phosphoinositide 5-phosphatase [Arabidopsis thaliana] (TAIR:AT5G66020.1); similar to hypothetical protein OsI_034692 [Oryza sativa (indica cultivar-group)] (GB:EAY80733.1); similar to Os11g0309000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067755.1); similar to Os02g0554300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047117.1); contains InterPro domain Synaptojanin, N-terminal (InterPro:IPR002013) Range:  from: 19103497    to: 19108332    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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