Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->TOE2(3)                                                                                       --------->ARR14(2)                                                       --------->MYB52(1)              <---------ARR11(1)                      ------->GAMYB                  ------->GAMYB                     <-----------ARR10                     --------->ANAC58               --------->ANAC58                   <---------ARR11(3)                     --------->ANAC58               --------->ANAC58                  <---------CCA1(2)                     --------->ANAC46               --------->ANAC46                  <---------ARR14(1)            --------->HSFB2a(2)                   --------->MYB52(1)       <------ZmHOX2a(1)         <-----------GT1----------->RAV1(1)     <---------ATHB12      ------->TEIL    ------>MYB46(1) --------->HVH21<-----------ARR10           <---------MYB52(2) --------->ALFIN1       ------>MYB83   catgacacattttaccagaatcaacgcaacaagtcttctcaatacaactaatcaacgaaacgaaggtgtatgaatcaggaacaaaaccaaatcttagtat  19062100                                                                           <---------ANAC58                                                                           <---------ANAC58                                                                       ---------->DOF2                                                                <---------LBD16                                                             --------->GLK1(1)                                                             <---------GLK1(1)                                                   ---------->DOF2--------->ZAT18                  --                                                --------->TOE1(3) <---------ZAT18         --------->At5g28300                        <---------ANAC46        --------->TOE2(3) --------->LBD16        <---------ANAC46                       <---------LBD16   ------>MYB83       <---------ARR14(2)         <---------LBD16             <---------ALFIN1            ------>MYB46(1)    --------->ARR14(2)     <-----------RAV1(1)   atcgaagtaaaaccccaacgcttgtttcggagaagacgagaccaaataagccttaaagacgggatttgcgcagtaaagcttgccaatgctgcggtatatc  19062200                                                                                ----------->GT1                                                                               <---------DEAR3(1)                                                                             --------->LBD16                                                                           <---------LBD16       ----                                                                          --------->MYB52(1)     ----                                                                         <-----------GT1         <---                                                                   --------->LBD16            <------    <---------REM1(1)                         <---------YAB1      --------->HSFB2a(2)         <------    --------->ALFIN1  ---------->DOF2      --------->GLK1(2)      <---------HSFB2a(2)         <------ ------->MYB52(1)  --------->AtMYB61     --------->MYB46(3)   ------->TEIL<---------At5g28300 <------   gaaacggtgtagctagaatcaccaaaacgcgaagaagacttcaacaatctgatagcccaagatgaatcccagaagttaccggaggtgattagcctcgcgt  19062300                                                                       --------->SPL7                                                                      ------>NtERF2                                                                     ----------->HVH21                                                                   <---------LBD16                                                                   --------->LBD16                                                                  <---------ANAC58                                                                  <---------LBD16                                                                  <---------ANAC58                                                                 <---------LBD16 ----->ZAT18                      <---------HSFB2a(2)          --------->ARR14(2) ----->WRKY38(1)                  --------->HSFB2a(2)          <---------ARR14(2) ------ZAT18                 <---------HSFB2a(1)          --------->ARR14(2)  <---------ARR14(2) ---O2                       --------->HSFC1(2)           <---------ARR14(2)  --------->ARR14(2) ---ANAC46                   <---------HSFC1(2)       --------->At4g35610     ------->TEIL ---ANAC58 --------->ALFIN1  --------->HSFB2a(1)      <---------At4g35610     --------->GLK1(2)   <-- ---ANAC58 <---------ANAC46<---------GLK1(2)       ---------->DOF2<---------ANAC46     ----------->HVH21   ggacttggaagaggtgtgtaatagagttggaatcttcgacaagtttgaaacccttaagcagacccgttccggggacgatgaatctggatgtgacgaattg  19062400                                                                                        --------->YAB1                                                                                       <---------YAB1                                                                                       <------ZmHOX2a(2)                                                                                     ------->GAMYB                                                                                    --------->MYB46(3)                                                                                   ------>MYB83                                                                                   ------>MYB46(1)                                          <---------TOE2(3)                       --------->MYB52(1)                                          ----------->ARR10                      --------->TOE2(2)            <----------DOF2     <----------DOF2            <------MYB46(1)       ------->GAMYB   <---          <---------HSFC1(2)  --------->ZAT2               <------MYB83          --------->TOE1(2)          --------->HSFC1(2)  <---------ZAT2             <--------P             --------->MYB46(3)       <------ZmHOX2a(1)<---------At4g35610         <-----------RAV1(2)         <---------MYB52(2) -------ANAC46          --------->At4g35610  --------->CCA1(2)      --------->GLK1(1)--------->YAB1   gcgaatagaggaagcttttgccattcatctccagcttgaatgctaagatttgagtcagggttggattcagaaatcgccattaaccaacgatcatagctat  19062500                                          <------NtERF2                                        <---------RAP2.6(2)                           --------->LBD16------>NtERF2                         <-----------RAV1(2)*TSS                      --------->ZAT2    <---------RRTF1(2)                      <---------ZAT2    <---------DEAR3(1)                 <---------YAB1         <---------ANAC46               --------->ATHB12        <---------LBD16 --------->GLK1(2)               --------->YAB1      <-----------RAV1(1)<---------GLK1(2)               <---------ICU4      <---------REM1(1)  <---------ARR14(2)              --------->ICU4       --------->ALFIN1   --------->ARR14(2)         --------->ANAC58======================RAV  ----------->ARR10    --------->TOE1(3)         --------->ANAC58<---------LBD16<---------RAP2.3(2)     ----------->GT1                     <   --------->ARR11(3) <---------At4g35610<---------RAP2.3(1)    <---------ZAT6      --------->HSFB2a(1)   <---------ARR11(3) --------->At4g35610--------->LBD16      <---------ANAC46      <---------HSFB2a(1) --------HVH21<---------YAB1<------ZmHOX2a(1)   <------ZmHOX2a(1)        --------->TOE2(3)          =   gtcaaggtctcaaggaatgattacagctcaggagaaggtgttgcggcgaaggagaagaatcgctcagtgtaaaaaccttaagagaaaccttctctgagag  19062600                                             <---------TOE2(3)                              <------ZmHOX2a(1)                                      --------->AHL20(2)                            <---------------AGL15                                   <---------ICU4      <---------ICU4               --------------->AGL15              <-----------RAV1(1) --------->ICU4       --------->YAB1              ==================   --------->HSFC1(2)             <---------YAB1    --------->TOE2(3)              ----------------->AGL1   <---------HSFC1(2)           --------->YAB1  --------->GLK1(1)                  <-----------------AG ------ZmHOX2a(1)    <------ZmHOX2a(2)<---------AHL20(2)    <----------ID1       <-----------GT1 ---- ===========================HOX2a_HOX2a<---------AHL20(2) --------->YAB1 <------ZmHOX2a(1)<---------TOE2(3)   aaggagacttccagttttgttggatcaagtcaaaacataattaaatagaggtttccataataacaacaaatttcaggaccattttgcaattttaggaaaa  19062700                                                           ------>MYB83                                                           ------>MYB46(1)                                                         ----------------->AGL3                                               ----------->HVH21                                              --------->AtMYB61                           <---------ANAC46  --------->ANAC58                           <---------ANAC58  --------->At4g35610                           <---------ANAC58  --------->ANAC58                        --------->ALFIN1     --------->bZIP60(2)              <----------DOF2                <---------At4g35610   ----------->GT1   --------->DAG2     --------->ANAC58 <---------MYB46(2) <---------ANAC58  ----------->GT1   ---------->DOF2     --------->DAG2   <---------MYB59    <---------ANAC58--------- ==========================================================================MADS_MADS  --------->YAB1 ------>DOF2  <---------DAG2            --------->ANAC58 <---------MYB111(1)<---------ANAC46<--------   aaagaagataaaaacactttttaaaagtggtgtgaatgggataaggcacctcacgagtacctaattttagtttagatggcgtttcaaatgaaaatttata  19062800                                      <----------DOF2                                      --------->TOE2(3)                         --------->ANAC58                    <---------At4g35610                         --------->AtLEC2                    --------->At4g35610                         --------->ANAC46              <---------TOE1(3)                     <-------                  <---------ICU4   --------->ARR11(3)  <---------YAB1--------->ARR11(3)  --------->YAB1 >AHL20(2)       --------->AHL20(2)<---------ARR11(3)  <---------TOE2(3)              <---------CCA1(2) -AHL20(2)<-----------GT1--------->ANAC58 ---------->DOF2 --------->CCA1(2)      <----------DOF2   agagacagacatttaccaattcattacaagcaaaaactatctttaaaagcagaatttaagataagctgaattatctagagagtctttcttatcttgatat  19062900                                             <---------WOX13(1)                                            <------------CBF                                <---------ARR14(2)                                       ---------->DOF2                                --------->ARR14(2)                           ----------->GT1                     <---------ARR14(2)   --------->AHL20(2)       <----------DOF2   <----------ID1==                     --------->ARR14(2)   <---------AHL20(2)  <---------At4g35610  ---------->DOF2 <-    <-------GAMYB   <---------GLK1(1)   <----------DOF2<------------CBF      <----------ID1        ==   <-----------RAV1(1)          --------->AGP1        <<<<<<<<<RAP2.2      <---------TOE2(3)     ---- --ARR11(3)       ----------->TBP<------ZmHOX2a(2)   <---------TOE2(3)*TSS--------->MYB52(1) --------   ttcttctgttggaatcatctatatatccgaatcagatcgagtctttaattgattttagattgttatctgcttgaattaagggaaaaaaagaaaaagaaag  19063000  Previous    Next  AGI:  At3g51320.1    Description:  binding. similar to binding [Arabidopsis thaliana] (TAIR:AT3G62890.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73672.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 19060581    to: 19062544    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g51325.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G55970.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G55970.2); similar to Zinc finger, C3HC4 type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91409.1); similar to hypothetical protein OsI_033864 [Oryza sativa (indica cultivar-group)] (GB:EAY79905.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 19062970    to: 19063673    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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