Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <        --------->ZAT6                                                                           ----      ------->TEIL                                                              --------------->AGL15   <---------REM1(1)                                                            <---------------AGL15  <---------TOE2(3)                                                            <-----------------AGL2 --------WOX13(1)                                                              ----------------->AGL3 ----->ATHB12                                                 <---------GLK1(2)<-----------------AGL3 ----WOX13(1)    <---------AHL20(2) <---------YAB1       <-----------GT1<---------ATHB12     -------- -YAB1<-----------GT1    <---------ANAC46              <---------AHL20(2)      ----------------->AGL2   gattgatgtaactctatatttagttttctgtgtatattgtgattctatgtaaactatataaacagtttcttccaatcttctcccatttatgggtttgatt  19041600                                              <----------DOF2                                          <----------DOF2                                <---------ZAT18                          --------->ZAT6  <---------ANAC58                            <---------------AtSPL8                  <---------At4g35610  <---------ANAC58 -----------GT1 --------->HSFB2a(2)    <---------ARR11(3)        <---------At5g28300<---------At4g35610 ------->GT1    <---------HSFB2a(2) <----------DOF2           <---------ANAC58      --------->At4g35610 ->ATHB12    ------->TEIL   --------------->AtSPL8            <---------ANAC58 <---------CCA1(2)-----   tgtaacttcttaatgcatcgagaagcagtattagtactctttatctttcttttgtactgctatttcttaccgctaactctcatctctggtgacttatcct  19041700                        <---------ANAC58                            <---------AHL20(2)          <----------DOF2                                          --------->AHL20(2)         <---------------AGL15                              -------->P         --------------->AGL15      <---------ICU4  --------->ANAC55(2)         <---------DAG2 <---------ANAC46            <---------ANAC55(2)     --------->WRKY12   <---------ANAC58  ------->TEIL     <-----------GT1                         <- ->ZmHOX2a(1)     <---------ZAT6--------->ZAT6<---------TOE2(2)    <---------AHL20(2)      <------ZmHOX2a(1)   gccttcgtttaccttttttagtgtttgcttagaaacactaattgcacctatgttatgtattctaccagattaatttgacaaaaaacaatgttaggagttt  19041800                                                                                                <----                     <---------ARR11(3)                                                       -------                    <---------At4g35610                                                      <-------                  <-----------RAV1(2)                           --------->ZAT14    --------->ICU4              --------->ZAT18                                   <---------ZAT14    <---------YAB1   <             --------->ALFIN1                 <---------At4g35610 ----------->GT1--------->YAB1<----- --------TOE2(3)<---------PCF2               ------->TEIL--------->PCF2--------->AHL20(2)<----------DOF2   taatgttttgaagaagtgggccagatgtttggagttttaggccaatgtagctcatcttgggcccagtacagaaataaatccagtgatgattctttctgat  19041900                                --------->At4g35610                                <---------ZAT2                <---------ANAC55(2)          <---------ANAC46      <---------At4g35610                       *TSS        --------->ALFIN1      <-----------RAV1(2)           <---------ANAC58      <------MYB46(1)        --------->LBD16                <---------ANAC46      <------MYB83   ------->TEIL              --------->At4g35610 <------NtERF2        ----------->GT1 -----WOX13(1) ------->TEIL  <------NtERF2     <---------At4g35610------>NtERF2         <---------ZAT6 -->ATHB12--------->ALFIN1   <---------At4g35610            <---------ANAC58<------NtERF2 --YAB1 <---------ANAC46 <-----------HVH21     --------->ZAT2   ---------->ID1        <---------At5g28300 ---------ANAC46--------->ANAC55(2)            <---------ZAT2  <-----------HVH21   --------->DOF5.7(2) -------CBF<---------------AtSPL3  ----------->GT1    <----------DOF2     <---------LBD16   tggctggaaggtgtgtgtacgtgaacctgtccgcaggtgattaaaacagagctgggcttttggcttgtcgcctaagtcgggaatcgtttactgtgaaata  19042000                                                     ----------->GT1                                                    --------->DAG2                                                   --------->DAG2                                                  ---------->DOF2                                             <---------HSFB2a(2)       <-------TEIL                                             --------->HSFB2a(2)      --------->ARR14(1)                                            ----------------->AGL3    --------->CCA1(2)                                            =========================================================                                           --------->CCA1(2)         <---------ARR14(2)                                           <------ZmHOX2a(2)         --------->ARR14(2)                                          <---------ARR11(3)         --------->ARR11(1)   --------->ARR14(2)                                          --------->ARR14(2)       ----------->ARR10    --------->ZAT14                               --------->ZAT14--------->LBD16    <---------ANAC46  <---------ATHB12                          ---------->DOF2 <---------ARR14(2)     <---------ANAC58  --------->MYB46(3)                       >>>>>>>>>TBF1      --------->ARR11(3)     <---------ANAC58--------->WOX13(1)                    >>>>>>>>>TBF1         --------->AGP1 ---------->DOF2   <------ZmHOX2a(2)   aaaacgagagagagtttttgaagaagaagaaagaacactcacaagatccagaaaaaggtaaaagatggcgagatacgatcgagcaatcactgtattctcc  19042100                                                                        ------>NtERF2                                                                       --------->ANAC46                                                                      <---------LBD16                                                                      --------->LBD16                                                                    <---------DEAR3(1)                                                                    --------->ZAT18                                                                   --------->ATERF1(1)                                                                  <---------SPL7                                                                <------NtERF2                                                             --------->ATERF1(1)                                                             <------NtERF2                                                            <-----------HVH21                                                            <---------SPL7                                                            ------>NtERF2                                                           --------->RAP2.3(3)                                                           --------->ATERF1(2)                                                           --------->DEAR3(1)                                                          --------->DEAR4(2)                                                          --------->RRTF1(1)                                                          --------->ATERF1(1)                                                          <------NtERF2<---------DEAR3(1)                                                          --------->ERF1<-----------HVH21                                                         --------->ABI4(1)                                                         <---------ATERF1(1)                                                         ------>NtERF2<------NtERF2                                                        --------->RAP2.3(3)                                                        --------->DEAR3(1)             <---------SPL7                                                        --------->RRTF1(3)            <---------ANAC58                                                       --------->RAP2.3(1)            --------->ETT(2)                                                       --------->ERF1 --------->At4g35610   ---------                                            ---------->DOF2<---------ATERF1(2)        <---------ANAC58                                       <---------RAP2.6(3)--------->RAP2.3(1)      <-----------RAV1(1)                                       <---------SPL7  --------->RRTF1(1)      --------->ARR14(2)                                       <-----------HVH21--------->RAP2.3(2)    <---------GLK1(2)-----                                 ---------->DOF2       --------->DEAR4(2)      <---------ARR14(2)               --------------->AGL15  --------->DEAR3(1)<---------DEAR3(1)     --------->ARR11(3)<---      <---------WRKY38(1)      --------->HSFB2a(2)     --------->ATERF1(1)   ----------->ARR10 ------    <-----------HVH21          <---------HSFB2a(2) <---------DOF5.7(2)<---------At4g35610  ------>ZmHOX2a(1) ==============================MADS_MADS --------->SPL7--------->ORA47(2)<------NtERF2<---------ETT(2)   cccgatggtcacctcttccaagtagagtatgccctagaagccgtccgaaagggtaacgccgccgtcggagtccgcggcacagatactgtcgtcctcgccg  19042200                                --------->LBD16                               <-----------RAV1(2)                           --------->ARR14(2)                           <---------ARR14(2)                           --------->GLK1(1)      <---------GLK1(1)   <------ZmHOX2a(1)      --------->GLK1(1)   ============================HOX2a_HOX2a                                   - ---------->DOF2        --------->LBD16                       <---------ARR11(3)                    < >ANAC46               <-----------RAV1(2)     ------>ZmHOX2a(2)           --------->ARR14(2)       - ->NtERF2          --------->At4g35610        <------ZmHOX2a(2)            <---------ARR14(2)       < ---NtERF2<---------ALFIN1===========================HOX2a_HOX2a         --------->LBD16  <----------DOF2 --->DEAR3(1)      <---------At4g35610        --------->GLK1(1)        <---------LBD16 <---------AHL20(2)   tcgaaaagaaatccacccctaagctccaggattccaggtattgctccgatctctaccgatacaagatgcttaaaccggatttagtccatttacttttgtt  19042300    <----------DOF2        ----------->RAV1(2) <-----------GT1 -------->ZAT18          <---------ALFIN1    <---------WOX13(1) ---------ZAT18          --------->REM1(1) --------->ATHB12          <---------YAB1 -------->ZAT14        <-----------HVH21 <----------DOF2           --------->YAB1                  -- ---------ZAT14     <---------TOE1(3)<---------ZAT18        <---------ANAC46        ------>ZmHOX2a(1)   tctgcactttgattttggttttaagcttcacctggatagctcgcttgatttactcaattgctacttgtatgatcactgtttcaatccttctgaactaaat  19042400                                                               <---------ZAT2                                                               --------->ZAT2                                                               --------->At4g35610                                                               <---------At4g35610                                  <---------ARR14(2)     <---------ARR14(2)                                  --------->ARR14(2)     --------->ARR14(2)                                  --------->GLK1(2)      --------->GLK1(2)                                  ------->TEIL          <---------GLK1(2)                                  <---------ARR11(1)  <---------TOE1(2)                                 <---------ARR14(1)----------->GT1                                 <---------CCA1(2) ------>ZmHOX2a(2)                              <--                               <---------ANAC58  --------->ARR11(3)                               ---  <-----------RAV1(1)          <---------ANAC58  <---------ARR11(3) ------->TEIL                  --- ---->ZmHOX2a(1)          <---------ICU4   <---------ZAT6<-----------ARR10         <----------DOF2<--   cctgatgttgggattttgtatcacttcgtaattgcgaatctagtattgttagatcgtagaatctgagctgaaccctagtttaagtctttttctctacgag  19042500  Previous    Next  AGI:  At3g51250.1    Description:  senescence/dehydration-associated protein-related. similar to ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) [Arabidopsis thaliana] (TAIR:AT2G17840.1); similar to hypothetical protein OsI_010442 [Oryza sativa (indica cultivar-group)] (GB:EAY89209.1); contains InterPro domain Senescence-associated (InterPro:IPR009686) Range:  from: 19039182    to: 19041655    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g51260.1    Description:  PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1); peptidase. Identical to Proteasome subunit alpha type-7-A (PAD1) [Arabidopsis Thaliana] (GB:P30186;GB:Q41942;GB:Q8LB36); similar to PAD2 (20S proteasome alpha subunit D2), peptidase [Arabidopsis thaliana] (TAIR:AT5G66140.1); similar to proteasome, alpha subunit-like protein [Solanum tuberosum] (GB:ABA40445.1); contains InterPro domain Proteasome alpha-subunit, conserved site; (InterPro:IPR000426); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) Range:  from: 19041974    to: 19044043    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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