Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   --------->ARR11(3)                                                                               <---------AHL20(2)                                                                            --------->AHL20(2)                                                                            <---------AHL20(2)                                                                           <---------AHL20(2)                                                                           --------->AHL20(2)                                                                        <--------HAHB4              <                      --------->YAB1                                    --------->YAB1            <--                     <---------ATHB12                                   <---------ICU4            <--                   --------->WOX13(1)                            <---------ARR14(2)              ----                --------->TOE2(3)                               <---------GLK1(1)<-----------GT1 <---       --------->TOE2(3)                                  <----------DOF2--------->TOE2(3)       <---       --------->TOE1(3)                             ------>MYB83--------->ARR14(2)            <----- ----AHL20(2)  --------->REM1(1)                     ------>MYB46(1)   <------ZmHOX2a(2)  <---------At4g35610 ----DOF2 <---------ICU4                           <---------MYB59     <---------ATHB12   --------->At4g35610   attgtttatccataactacatcaatcaaatccaagttgatatactagttagaacctaatactttacaaatccgatcattaatttatcttgtctgcttaag  19035800                                                                        --------->ATHB12            - ---------AHL20(2)                                                     <---------YAB1             <-- -------CCA1(1)         <---------ICU4                               --------->YAB1             ----- -------RVE1(1)     --------->AHL20(2)                              ----------->TGA1            ----- ----->ARR11(3)     <---------AHL20(2)                           <---------AHL20(2)          -------- ------GLK1(2)  ----------->GT1                                  --------->AHL20(2)          -------- ------ARR11(3)<---------TOE1(3)           ----------->GT1   --------->ICU4              --------->ANAC58 ----TOE2(3)   <---------TOE2(3)<---------ICU4  ---------->DOF2 --------->AHL20(2)       --------->ANAC58   attttttttttgtgaataaggtttaattatctcatcaatacgatttagtaaaaagtctgtgcaaaaattaatgacgattgggatttttgtaacgcaagcc  19035900                     <-------MYC3                     <-------PIF5                     ------->MYC3                     <-------MYC2                    --------->ANAC55(2)                    --------->ANAC58                    --------->ANAC46                    <---------ANAC55(2)                    <---------O2                    --------->bZIP60(2)                    --------->ANAC58                    <---------TGA1a                    --------->TGA1a                    --------->O2                   ------>NtERF2                  <------------OsbHLH66                --------->LBD16                              <----------DOF2                ------>NtERF2                          <---------TGA1a                <-----------HVH21                      <---------ANAC58  --------->HSFB2a(2)------->PIF5                      --------->TGA1a  <---------HSFB2a(2)------->MYC2                      <---------O2      ----------->GT1 -------->SPL7 --------->ANAC46                        =================bZIP_DOF  --------->TOE2(3) -------SPL7   --------->ANAC58           --------->ANAC58  <---------ANAC58     ----------->GT1    - ---------->AtSPL8<---------ALFIN1        --------->ANAC58  <---------ANAC58     <---------ANAC55(2)< ---------->AtSPL3------------->DYT1  --------->AtMYB61<---------bZIP60(2)<---------MYB52(1)  <<<<<<< ->ANAC58      --------->ANAC58    --------->ANAC46    --------->O2 --------->MYB46(3)        <------ ->ANAC58     <---------LBD16     --------->DEAR3(1)   <---------ANAC58 ----------->GT1 --------->YAB1   cgtaccagaacatgtctccgccacgtgatttctccacagaccacaagcatttttaagacgtggctttctatcaaccgttaaaaacgtaaatcatattaac  19036000                                                          ----------->GT1                                                     --------->YAB1                                                  --------->YAB1                                                 <---------YAB1                       --------->ANAC58         --------->AHL20(2)                              <----                       --------->ANAC58       <---------------AGL15                            <----- ------>MYC3           --------->ANAC46       --------------->AGL15                            ------ -------MYC3 ------>MYB46(1)                 --------->YAB1                           --------->YAB1 <<GT-1      ------>MYB83         <-----------GT1<---------AHL20(2)                --------->DAG2 -----GT1  --------->TOE2(2) ----------->GT1<---------ATHB12    <-------TEIL      ---------->DOF2   -   catgtgtctactacctacggtgtaaacgaaactgtataacgtccctatcatataatagtaatgtgatacgttggaatgtagccaaaaagcataaaaaata  19036100                                         <-----------GT1                                       --------->YAB1                                      <---------YAB1                                   <---------AHL20(2)                                            ----         <---------TOE2(3)      <---------AHL20(1)           --------->AHL20(2)                  <---       <---------AHL20(2)       <---------ARR11(3)           <---------AHL20(2)              <-------GAMYB -----AHL20(2)                  --------->AHL20(1)       <---------AHL20(2)                 --------- ----AHL20(2)             ------>ZmHOX2a(1) <---------ANAC46 <---------AHL20(1)             --------- --->AHL20(2)    <---------TOE2(3) <---------YAB1       <---------AHL20(2)           <---------REM1(1) ---------->GT1 --------->YAB1  --------->AHL20(2) ------->TEIL         ----------->GT1   <---------MYB52(1)   aatagataattaagtttataatgttttcctacaaaatattattataccgtatgtattttttattttattttctgaagttaaaaacagatgtagttagttg  19036200                                                 <---------At4g35610                                                 --------->At4g35610                                                 <---------STY1(2)                                                 --------->STY1(2)                                                --------->MYB111(2)                                             <------MYB46(1)                                             <------MYB83                                            --------->MYB111(1)                                            <---------MYB46(3)                                            --------->MYB59                                            --------->MYB46(2)           <---------------AGL15            --------->MYB111(2)           >>>>>>>ZML2      <---------ZAT14 --------->MYB55(2)           --------->HSFB2a(2)             *TSS<--------P           <---------HSFB2a(2)          --------->ALFIN1                         --------->ANAC58           --------->HSFC1(1)          --------->LBD16                    --------->YAB1           --  <------------CBF          --------->ZAT18<--------P                <---------MYB52(1)     <-------- ------->GT1                --------->ZAT14<---------MYB55(1)       <-----------HVH21       --------- ------ANAC46 ---------->DOF2         <---------ANAC58            --------->SPL7 --------->ANAC58  <- >MYB52(2) <---------HSFC1(1)         <---------ANAC58           <---------MYB52(1) <----------DOF2-- >MYB46(2) --------------->AGL15      <---------ANAC46 <---------ZAT18 --------->WOX13(1)   <--------   agtaaattgtgttctagaaagagaagagagagcagtagtaccgtggtaggtagctagcgacctcttcgttcgtcagtcatcacaagctttgaaagatttt  19036300    <---------ALFIN1   --------->MYB46(3)                                                                          <-----  -------->P            --------->YAB1                                                      --------- ------->At4g35610      <---------ICU4                                                     <--------- -GLK1(2)              <-------TEIL                                                        <---------LBD16 >ARR11(3)         --------->ARR11(3)          <---------ARR11(3)                 <---------YAB1  <-- --------At4g35610 <---------AHL20(1)         <---------CCA1(2)                 --------->YAB1<------ZmHOX2a(1) ------->ZAT2   --------->AHL20(2)      <----------DOF2                      <---------ICU4<---------HSFB2a(2) -ARR11(3)    <----------DOF2  --------->ANAC46--------->ARR11(3)<----------DOF2<<<<<<<<<<<<<<<<<LFY-   cagctaccactctctcctttatatattcattacacatctcttctttctatatctctcttaatttagtcttttgtcttcgtaattacaatggctccaggaa  19036400                                                                                                    -       --------->At4g35610                                                                         --       <---------ZAT2    --------->At4g35610                                                      <--       <---------At4g35610                                                                    ------- ----ARR11(3)  <------NtERF2                                     ---------->DOF2              <------ >LBD16--------->ZAT2    <---------At4g35610               --------->MYB46(3)              --------->ANAC58 --RAV1(2)  <---------LBD16                 >>>>>>>GRF7  --------->MYB52(1)                --------->ANAC58 --------DOF2 --------->LBD16  --------->ZAT6         <---------------AtSPL3            <----------ID1 -------->WRKY38(1)<-----------ARR10     <-----------HVH21------->TEIL       --------------------->WRI1   ctttgactgagctagccggagagtctaagctcaactctaaatttgtcagggacgaagatgaacggcccaaagtcgcttacaatgtgtttagcgacgaaat  19036500                                                              <------ZmHOX2a(2)                                                             --------->ARR11(3)                                                             <---------ARR11(3)                                                             --------->ARR14(2)                                                         <------NtERF2                                                         <---------MYB52(1)                                                        <---------RAP2.6(3)                                                        ------>NtERF2                                                        <-----------HVH21                                                       --------->ATERF1(2)                                                   ------>ZmHOX2a(2)                                                  --------->At4g35610                                                  <---------At4g35610                                                  <------ZmHOX2a(2)                                                  --------->CCA1(2)                                                 --------->ARR14(2)                                                 <---------ARR14(2)                                                 <---------ARR11(3)                           <---------bZIP60(1)   --------->ARR14(3)                           --------->bZIP60(1)   --------->ARR11(3)                           <---------bZIP60(2)   --------->AGP1------>ZmHOX2a(2)                           <---------O2         --------->GLK1(1)      <---------ANAC46         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------GLK1(1)      <---------ANAC58      ------>ZmHOX2a(2)    <---------ANAC46    ----------->ARR10<-------GAMYB    --------->ARR11(3)     --------->O2     =========================HOX2a_HOX2a    <---------ARR11(3)    ----------->STF1  ==============HOX2a_HOX2a  <---------ANAC58 <-----------HVH21       <---------TGA2(2)  ==========================HOX2a_HOX2a -------->LBD16         ----------->TGA1    <------ZmHOX2a(1)<---------ARR14(2)          <---------HSFB2a(1) ------->LBD16          ----------->HVH21   =============HOX2a_HOX2a<---------TOE2(3)    <---------At4g35610 -------LBD16    <---------MYB52(1)    --------->DAG2  <---------bZIP60(1)               --------->HSFB2a(1) -->GLK1(1)     <---------DEAR3(2)    ---------->DOF2  --------->bZIP60(1)               --------->At4g35610 ---GLK1(1)   <---------LBD16<---------------------WRI1<---------ATERF1(2)        --------->ALFIN1---   cccggtgatctctctcgccggtatcgatgacgtcgatggaaaaagaggagagatctgccgtcagatcgttgaggcttgtgagaattggggcatcttccaa  19036600                                                                          --------->LBD16             <---------------------WRI1   --------->O2                   --------->ANAC46             <------NtERF2           ----------->HVH21                   <---------HSFB2a(2)            ------>NtERF2          --------->CCA1(2)             <---------DAG2           <---------DEAR3(1)     --------->ARR14(2)             <----------DOF2           --------->DEAR3(1)     <---------ARR14(2)            <---------ANAC58           <---------ANAC46      <------NtERF2                  <---------ANAC58   --------->ZAT2        --------->ANAC46        --------->LBD16             <----------DOF2 --------->SPL7       <---------LBD16         <---------ANAC58    ====================bZIP_DOF   --------->ANAC58     <------ZmHOX2a(2)         <---------ANAC58    <---------TGA1a       --------->HSFB2a(2)        <    <-----------HVH21          <---------ANAC46    ====================bZIP_DOF   --------->ANAC58<-- ------>ALFIN1                <---------LBD16      --------->TGA1a      <---------LBD16  <---------MYB52(1)   gtggtcgatcacggcgtcgatactaacttagtggcggatatgactcgtctcgctcgtgacttctttgctttacctccggaagacaagctccgtttcgaca  19036700  Previous    Next  AGI:  At3g51238.1    Description:  other RNA Range:  from: 19036089    to: 19037758    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g51240.1    Description:  F3H (TRANSPARENT TESTA 6); naringenin 3-dioxygenase. Identical to Naringenin,2-oxoglutarate 3-dioxygenase (F3H) [Arabidopsis Thaliana] (GB:Q9S818;GB:Q38877;GB:Q9C526;GB:Q9C528;GB:Q9C530;GB:Q9C563;GB:Q9C5V7); similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G10490.1); similar to flavanone-3-hydroxylase [Arabidopsis lyrata subsp. petraea] (GB:CAC26921.1); similar to Naringenin,2-oxoglutarate 3-dioxygenase (Flavonone-3-hydroxylase) (F3H) (FHT) (GB:Q05965); similar to flavanone 3-hydroxylase 1 [Brassica napus] (GB:ABB91635.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123) Range:  from: 19036243    to: 19037918    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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