Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->At5g28300      <------NtERF2     <---------DEAR3(2)     <---------MYB46(3)    <---------ANAC46    <---------DEAR3(1)   <------NtERF2   <---------ABI4(1)   --------->ATERF1(1)  <---------ORA47(2)  ------>NtERF2  <---------RAP2.3(1)  <---------ERF1  <---------ATERF1(1)  <---------RAP2.6(1)  <---------RRTF1(1)  <---------DEAR4(2) --------->DEAR3(1) <---------RAP2.3(3) <---------DEAR3(1) <---------RRTF1(3) <---------RRTF1(2) <---------RAP2.3(2) <---------ATERF1(2) --------->ATERF1(2)                                                                        ========= -------->RAP2.3(1)                                                                         ------>ZmHOX2a(2) -------->ATERF1(1)                                                                         <-------- ------NtERF2                                                                               <-------- ---------ABI4(1)                                                                          ========== --------ATERF1(1)                                                                    ---------->DOF2 --------RAP2.3(1)                       ---------->DOF2                   --------->ARR11(1) --------ORA47(2)                    ------->TEIL                          <---------ARR14(2) --------DEAR4(2)                 <---------WOX13(1)                       --------->ARR11(3) ---->NtERF2                   <---------YAB1                     <---------CCA1(2)   =============== ------>ATERF1(2)              --------->ICU4         ---------->DOF2    ----------->ARR10 <------ZmHOX2a(2) -------ATERF1(2)      --------->At4g35610        ----------->HVH21    <---------MYB52(1) <---------ARR11(3) -------DEAR3(1)       --------->ZAT2<---------AGP1----------->RAV1(1)--------->TOE2(3)   --------->ARR11(3) -------RAP2.6(2)    <------ZmHOX2a(1) ------>ZmHOX2a(2) <---------At4g35610     <---------ANAC46 ----->RAP2.6(3)     =========================HOX2a_HOX2a--------->At4g35610--------->CCA1(2)   ccggcggcggtaaacctatagaaggagctagcgatgatggatctaaagtccagcgacaaagctgaaccatatcgttagatatggctgataaagatcgtgt  19024000                          ===================bZIP_DOF                          <---------DAG2                      <---------ARR14(2)                      --------->ARR14(2)                 --------->ALFIN1                ------->MYC3                <-------MYC3                <-------MYC2                ------->MYC2               <---------ANAC46               --------->ANAC55(2)               --------->O2               <---------ANAC58               ======================bZIP_DOF               <---------ANAC58               <---------ANAC55(2)               --------->TGA1a               <---------TGA1a     <---------O2               <---------O2        --------->O2 ===============HOX2a_HOX2a        <---------TGA1a -ANAC58      ------------>OsbHLH66--------->TGA1a       <---------AHL20(2)    <---------ZAT6 -ANAC58 ------>ZmHOX2a(1)<----------DOF2      <-----------GT1    --------->DAG2          <----------DOF2 ===============HOX2a_HOX2a    <-----------GT1<-----------GT1    ---------->DOF2      <---------ZAT18 ========================bZIP_DOF  =========================================bZIP_DOF  --------->ZAT18   caatactcatccttctcacgtgtggatactttttcacaagtggcatttttaactcttattttttttaaaaagttggatttagagtaagtgggcttaattt  19024100                                                                      <---------AHL20(2)     --------                                                                     --------->AHL20(2)      --------                                                                     <---------AHL20(2)      <-------                                                            --------->YAB1                  ---------                                                          <---------AHL20(2)                ---------                                                          --------->AHL20(2)           <------ZmHOX2a(1)                      <----------DOF2                 --------------->AGL15           <----------ID1-              <---------REM1(1)                  <<<<<<<<<MYB2 --------->AHL20(2)     ----------->GT1        ----------->GT1                        <------MYB83<---------YAB1            <---------TOE2(3) --------->YAB1    <------ZmHOX2a(1)           <------MYB46(1) --------->YAB1    --------->YAB1------   caattttaagttgtaaatgtaggactttgttttatctgtaatgccaatttggttttccattttaataaaaaataaatagccaaaaataaggaaaaaatct  19024200     <---------AHL20(2)     --------->AHL20(2)                                           <---------AHL20(1) --------->AHL20(2)                                   --------->MYB59 <---------AHL20(2)                              --------->AHL20(2)<---------YAB1 ->GLK1(2)                                      <---------AHL20(2)--------->AHL20(2) ->ARR11(3)                               <---------AHL20(2)      <---------AHL20(2)         <------- --ARR11(3)                               --------->AHL20(2)     --------->YAB1 <---------At4g35610 - >RVE1(1)                              --------->AHL20(2)       <---------ATHB51--------->At4g35610 - >CCA1(1) --------->AHL20(2)           <---------AHL20(2)       <---------ATHB12<---------ZAT2      - -------->AHL20(2)              ----------->GT1 --------->AHL20(2)--------->AHL20(1)    --------->TOE1(2) --->TOE2(3)         <------ZmHOX2a(1)--------->AHL20(2)<------ZmHOX2a(1)       --------->ZAT2      -   tatttaattttttaaaataagtaggaatccaattgagttaataaataaatataaattaggaatccaattataatttggagttagctgagacctgagaatt  19024300               --------->AHL20(2)              --------->AHL20(2)              <---------AHL20(2)           --------->AHL20(2)          <---------AHL20(2)                                                <---------ANAC46          --------->AHL20(2)                                          <---------ARR14(2)    ---------      --------->AHL20(2)             ----------->TBP                  --------->ARR14(2)<----------ID1      <---------AHL20(2)             <---------AHL20(2)          >>>>>>>>>MYB98--------->ZAT14 --ICU4<---------AHL20(2)        ----------->TBP               ------>ZmHOX2a(1)      ---------->DOF2 -------->ANAC58              <---------MYB52(1)              <---------MYB59  <---------ZAT14 -------->ANAC55(1)          <-------GAMYB                --------->HSFB2a(1)  <---------ZAT18 -------->ANAC58   --------->MYB52(1)--------->AHL20(2)   <---------HSFB2a(1)  --------->REM1(2)----- -------->ANAC46   <-----------GT1 ----------->TBP ---------->DOF2   *TSS <---------At5g28300 -------   acacgaaattaaataaataaataactgcttccgttatatataaatacagtctctaaaggaacgtcctaacaaaatccaccgtgtactaaaaagaaaaaga  19024400                                                                       <---------TGA1a                                                                       --------->TGA1a                                                                       =================bZIP_DOF                                                                       <---------O2                                                                       --------->O2                                                                      <------NtERF2                                                                     <---------DDF1                                                                    ----------->HVH21                                                                    --------->DEAR3(1)                                                                    --------->DREB2C(2)                                                                    --------->RAP2.3(3)                                                                    --------->At1g77200                                                --------->YAB1     --------->ERF1                                                <---------ICU4     --------->ATERF1(1)                                               <---------YAB1      --------->RAP2.3(1)                                             --------->YAB1        --------->DEAR3(2)                                             <---------ICU4        --------->ORA47(2)                                            <---------YAB1        --------->At4g35610                                          --------->YAB1          ------>NtERF2                                          <---------ICU4          --------->LBD16         <---------MYB52(1)                                         <---------ATHB12         <---------At4g35610   <---------ANAC58                  <---------TOE1(3)    --------->WOX13(1)     ------>ZmHOX2a(1) <---------ANAC58             <---------MYB46(3)      <---------ATHB12     --------->ARR14(2)    <---------ANAC58 ->DOF2------------>AtMYB77      <---------ATHB12         <---------ARR14(2) <----------DOF2  <------ ---->AHL20(2)    <---------TOE2(3)--------->WOX13(1)--------->ANAC58<---------ATERF1(1)<---------ANAC58 ---->GT1  <-------GAMYB       --------->WOX13(1)    --------->ANAC58------>NtERF2   <-----------GT1   aaatagaagagacagttgttagggttttctcatcaatcaatcaatcatcatcatcacccaaatccttccgccgacgtctctttcttgtttccgttttctc  19024500                                                                                      <------ZmHOX2a(2)                                                                                     <---------ARR11(3)                                                                                     --------->AGP1                                                                                     <---------ARR14(2)                                                                                     <---------AGP1                                                      ------->TEIL                   --------->ARR14(2)                                                     <---------CCA1(2)       --------->GLK1(2)                                                     <---------GLK1(2)      --------->GLK1(1)        ----------->HVH21                        ------>ZmHOX2a(1)          <---------GLK1(1)     ------>ZmHOX2a(2)                          --------->TOE2(2)     <---------MYB52(1)    <------ZmHOX2a(2)     <---------WRKY18(1)   --------->TOE1(2) --------------->AGL15------>ZmHOX2a(2)    --------->GLK1(1)     <-----------GT1--------->YAB1          <---------ANAC58    --------->ARR11(3)    <---------GLK1(1)    --------->WRKY38(1) <---------ARR11(3)  <---------ANAC58   <---------CCA1(2) -----GT1       --------->MYB46(3)      <---------ATHB12--------->TOE2(3)<---------TOE2(3)   tctccgatctctgactcatccatcgtattgaccaattccctaatcaaaatccttcgaatctcaatttgcttcgttaagaaatctgtagatctagcagaaa  19024600                    ----------->GT1                   <---------YAB1                ------->TEIL--------->MYB52(1)                <---------ARR14(2)                                                          <--------                --------->GLK1(2)                                                           ---------            ------>ZmHOX2a(2)                 --------->YAB1                       <----------DOF2           --------->At4g35610   <------ZmHOX2a(2)                             ---------->ID1           <---------At4g35610  <-----------HVH21---------->DOF2     <-----------GT1   <---------TOE2(3) <-------TEIL   --------->ARR14(2) --------->MYB52(1) --------->GLK1(2)      --------->MYB52(2)   aaattcatatttgatctgaatctgataaaaaaacgatcaccggttgaatcaaaaagaatcgaattttgttttcactggtttgtttctttgagatttatat  19024700                                                                          ------>ZmHOX2a(1)                                                                <---------YAB1                                                                --------->ICU4                                                            ----------->GT1 --------->YAB1                        ------>NtERF2       >>>>>>>GRF7  <---------ICU4 --------->AHL20(2)             <---------AtLEC2        <-----------HVH21--------->TOE2(3) -AHL20(2)               --------->LBD16             <----------DOF2<---------AHL20(2) >AHL20(2)   <------ZmHOX2a(2) <-------TEIL     ------>ZmHOX2a(1)   --------->AHL20(2)   gaataatatgaagagatcgaagaaacccagagtttcatggccaccaggtcctaagctttgtcaggtataattaatccttatatgttccatgttttcttat  19024800                                                                           <---------ARR11(3)                                                                           --------->ARR14(2)                                                                           <---------ARR14(2)                                                                  ------>MYB83--------->TOE2(3)                                                                --------->TOE2(3)                                                                <---------MYB59------>ZmHOX2a(1)                                    <-----------ARR10        <-----------GT1<------ZmHOX2a(2)                                   ------>MYB83            <---------MYB52(2)------>ZmHOX2a(2)                           <---------At4g35610        --------->YAB1    <---------HSFB2a(2)                        ------>ZmHOX2a(2)             <-----------GT1   --------->HSFB2a(2)                   <---------WOX13(1)                <---------YAB1    <---------LBD16 <----------DOF2 --------->ATHB12  ------>MYB46(1) --------->YAB1 ------>MYB46(1)   ccactttctaatcccaaattgattgatccatctcaccaaatctaaactctcgattataacaattaacctaatttctggatcctaaaatttcgattttgaa  19024900  Previous    Next  AGI:  At3g51180.1    Description:  zinc finger (CCCH-type) family protein. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT5G66270.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45847.1); contains domain CCCH zinc finger (SSF90229) Range:  from: 19024369    to: 19027164    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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