Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           <---------ANAC46                                                                        <---------TOE2(3)                                                                     <----------CDC5                                                                <---------ALFIN1                                                                --------->ANAC46                                                               --------->MYB46(3)                                                             --------->ARR14(2)                                                             <---------ARR11(1)                                                             <---------ARR14(2)                                                            <---------CCA1(2)                                                          <---------ANAC58  ---------->TaMYB80                                                          <---------ANAC58  --------->ARR14(2)                                                          <---------ANAC46  <---------ARR14(2)     <-----------RAV1(2)                                  --------->ANAC55(2)      --------->ANAC46 -------AHL20(2)     <-----------HVH21               --------->ICU4 <---------At4g35610 -------AHL20(1)    ----------->GT1                  <---------YAB1 --------->At4g35610 ------>AHL20(1) --------->MYB52(1)                --------->YAB1  --------->DEAR3(1)<---------MYB52(1) --->AHL20(2) <---------------AtSPL3              <---------ATHB12--------->MYB46(3)<-------GAMYB ->GT1 <---------At4g35610              --------->TOE2(3) <---------ANAC55(2)<----------TaMYB80   aatatttgcaggtgatgaagaacggtcatatagccactataaccttgttccagtcatgatgcgtatccaccgctgaggtatatgcccgttactaattctt  19008200                        ------->TEIL                     <---------YAB1       <---------ANAC46                  --------->ICU4     <------MYB83                        <---------ZAT6               ---------->ID1     <---------MYB52(1)                 <---------ANAC58             <------MYB83 --------->KAN4(2) --------->HSFB2a(2)      <---------ANAC46             <------MYB46(1)  <---------At5g28300                    <---------ANAC58         -------            --------->MYB59  <-----------GT1<---------HSFB2a(2)    --------->ARR11(3)         <------  <---------TOE2(3)  --------->ICU4  <------MYB46(1)      <-----------RAV1(2)              ----------   cgtttatgttgaatttggtcgtaatgaatattcactgtttggttttgtagaaaaaatggctcagattaatgtcttgtgttatatgctacttaacaaagct  19008300                                                                 <-----------HVH21                                                                 <-----------TGA1                                                                --------->ANAC46                                                                --------->ANAC58                                                                --------->TGA1a                                                                --------->bZIP60(1)                                                                <---------TGA1a--------->ANAC58                                                                <---------bZIP60(1)        <---------ATHB12                                        <---------O2   --------->ANAC58   --------->TOE2(3)                                            --------->ANAC58  --------->REM1(1)                                             --------->O2--------->TOE1(2) -->HSFC1(2)    <----------DOF2                               --------->MYB52(1) ---HSFC1(2) <---------ARR11(3)                  <---------GLK1(2)         <---------HSFC1(2)    ---- >DOF2--------->WOX13(1)        <---------ARR11(3)--------->GLK1(2)        --------->HSFC1(2)--------   tcttacatcaatcaatgtctttgtaggggctcaagatgctatcttcaaccagactctgtaaatctaacgtcacaagaagctacgaaaactatcgatgata  19008400                                                           --------->YAB1             <---------------AtSPL8              --------->LBD16                                -----             <---------------AtSPL3             --------->LBD16             <---------YAB1      <----    <----------ID1 <---------ZAT6              <---------LBD16  <---------MYB52(1)<----------DOF2 <-- ------------->AGL1----------->GT1    <-----------GT1   --------->YAB1      --------->ICU4     <----- ->YAB1    <-----------RAV1(1)     ----------->GT1     <---------YAB1  ----------->GT1     <---------   ccaaaaacgacaaatgttgtacagttatacatttgtctagttactatcacccgggttataataacagttattctggttataattcttttcagactttatt  19008500      --------->AHL20(2)      --------->YAB1                                                             <---------TOE1(3) ---->YAB1                                                                       <---------TOE2(3) -----ICU4                         --------->AHL20(2)                    --------->AHL20(2) -------YAB1                   <-------TEIL     <---------ICU4<---------LBD16  *TSS                 - ----YAB1            ----------->GT1            --------->ATHB12     ----------->GT1        --------- -DOF2<---------AHL20(2)  ---------->DOF2      <---------YAB1<-----------GT1  <---------AHL20(2)-----   atgactaattatatatcatttatctgttaaaagttcataaaatagcctcatcatttgagttttttgcggtatcgataaattttaaggttttaaaaaaaga  19008600                                                                               <xxxxxxxxxxxxxxxsmallRNA(le3)                                                                               <xxxxxxxxxxxxxxxsmallRNA(si3)                                                                               <xxxxxxxxxxxxxxxsmallRNA(fl3)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                             <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                            <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                            <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                           <---------ZAT2                                                                           --------->ZAT2                                                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                           --------->At4g35610                                                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                       -------->P                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                        <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                               <xxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            ------>NtERF2                          <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                            --------->LBD16                      --------->ARR14(2)                          <---------LBD16                        <---------ARR14(2)    --------->ANAC58                          <------NtERF2<xxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          --------->ATERF1(1)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---                         ------>NtERF2<xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                         <---------RAP2.3(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  *TSS                        --------->DEAR3(1)             ----------->ARR10--------->MYB46(3)  ---------                        <---------DEAR3(1)             <xxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ANAC58                       <xxxxxxxxxxxxxxxxsmallRNA(i) <-----------HVH21------>ZmHOX2a(1)<---------LBD16                       --------->ATERF1(1)          <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<--------                      <-----------HVH21<---------LBD16<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<--------                      <---------ATERF1(1)--------->LBD16      <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---------->GT1      --------->DEAR3(1)<xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ->DOF2        --------->DAG2<xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<--- ---->ARR11(3)---------->DOF2<------NtERF2      <---------LBD16 <xxxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   aattgaaaaaacaaaaaaaagctccgtcgccgggactcgaacccgggtctctcgggtgagagccgagtatcctaaccagctagactacgacggaatgttg  19008700                          --------->ANAC58                          --------->ANAC58   <---------ICU4        <---------ZAT14             <---------LBD16  --------->ICU4         --------->ZAT14             --------->ZAT18       <---------ANAC58 ------ANAC58            --------->ZAT18             <---------ZAT18       <---------ANAC55(2) >HSFB2a(1)              <---------ZAT18            <---------ANAC46       <---------ANAC58    <----- -HSFB2a(1)      <-----------TBP                 --------->ALFIN1          <---------ANAC46    <----- ---RAV1(1)     <---------AHL20(2)        <---------HSFB2a(2)              --------->ANAC55(2) <----- ------ANAC58  --------->AHL20(2)         --------->HSFB2a(2)           <---------MYB52(1)  <--------   cctactgatgacttaaattttatatagcacactactggtatagtcgagaaggttgtgcggtatctcttctatccgttgcgtagcaaggttttgtctttcg  19008800        --------->HSFB2a(2)        <---------HSFB2a(2)        --------->LBD16       <---------LBD16       <---------HSFB2a(2)       <---------ANAC46      <---------LBD16    <---------ARR14(2)    --------->ARR14(2)                                                                            <-- ----ANAC46       --------->DAG2                                                                  <-- ----ANAC58      --------->DAG2         <---------DEAR3(1)                <----------DOF2         <-- ----ANAC58     ---------->DOF2        <---------At4g35610      <---------MYB52(1)        <----------DOF2 --DOF2--------->HSFB2a(2)   --------------------->WRI1     ------>ZmHOX2a(1)  <---------GLK1(2) <---   tgtatggttccgggaaggaaaaggggaagtggattgttttcatcggcgataagtctcttctcctctggtacttcttctttcgattctcttctcttttgtt  19008900            <---------ARR14(2)            <---------GLK1(2)          ----------->ARR10  <---------ARR14(2)  <---------TCP20  --------->PCF2                                                                     --------->LBD16  --------->ARR14(2)       <----------DOF2                               --------->ARR11(3) -------ANAC46        <---------ZAT2                      --------->ATHB12      <---------GLK1(1) -------ANAC58        --------->At4g35610    <----------DOF2             <---------ARR11(3) -------ANAC58        <---------At4g35610   <---------ANAC58          <---------HSFB2a(2) ------LBD16--------->ARR14(2)              <---------ANAC58          --------->HSFB2a(2)         ---   tcgggttccacttagatactctgtagctgctttcatttcagaattggcttttggttcaatccattggtagtgcgagaacttgaattccgaaatagttccg  19009000                                                                            <--------P                                                                  --------->ATHB12 <---------TOE1(3)                                                             <---------ATHB51<---------MYB46(3)         <---------GLK1(2)                                   --------->ICU4 <---------MYB52(1)         <---------ARR14(2)                              <---------ZAT18  <---------MYB46(3)         --------->ARR11(3)                     --------->YAB1--------->ATHB12     <---------TOE2(3) ------>GLK1(1)      --------->ARR11(3)   --------->GLK1(2)  <---------YAB1<-------GAMYB   atttctcttcagattttggatgttatcttgctaattgagtttagaatccatagtaatagtgcgattattgatttagcggttgtttagggtttaagcctgt  19009100  Previous    Next  AGI:  At3g51130.1    Description:  Identical to UPF0183 protein At3g51130 [Arabidopsis Thaliana] (GB:Q9SD33;GB:Q53YG9;GB:Q8LD70;GB:Q94C31); similar to unnamed protein product [Vitis vinifera] (GB:CAO48256.1); similar to Os06g0714000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058570.1); contains InterPro domain Protein of unknown function UPF0183 (InterPro:IPR005373) Range:  from: 19005120    to: 19008568    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g51140.1    Description:  heat shock protein binding. similar to CDF1 (CELL GROWTH DEFECT FACTOR 1), heat shock protein binding [Arabidopsis thaliana] (TAIR:AT5G23040.1); similar to Os03g0255200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049592.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22684.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) Range:  from: 19008579    to: 19010883    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g51135.1    Description:  pre-tRNA. tRNA-Glu (anticodon: CTC) Range:  from: 19008622    to: 19008694    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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