Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               <-------                                                                                            <--------    --------->AtMYB61                           ------->TEIL     --------->ANAC46     ------->TEIL    --------->ZAT6                           --------->ANAC46  --------->ZAT6     --------->SPL7 ---- --->ZAT6      ---------->DOF2    <---------HSFB2a(2)   <---------ZAT6      ------->TEIL    <--------   ctacgaccactacatagaaaagctaagtaaacaattctcgtagttctacgaatcgcgagtcttaaacactaaacgatgaatccatacgaacatggcgaac  18964500                   ---------->DOF2            --------->ANAC46      --------->LBD16     <---------HSFB2a(2)     --------->HSFB2a(2)    ------>ZmHOX2a(2)     <---------ANAC55(2)   <------ZmHOX2a(2)      --------->ANAC55(2)  --------->ARR14(2)     <-------TEIL  <---------ARR14(2)<---------TOE2(3)                                                         ------- --SPL7     --------->ANAC58                        --------->TOE2(3)                      --------->YAB1 -ANAC58    --------->ANAC58          --------->ANAC58          <---------YAB1        <---------DAG2 ----->TOE1(2)    --------->AHL20(2)  --------->ANAC58 ---------->DOF2                <----------DOF2 -ANAC58---------->DOF2 --------->CCA1(2)       <---------WRKY38(1)              --------->LBD16   gagggatccagaaaacgccattaaagatacataatccaactagcaacgagtcaacatcaaagcatcttcatagacattgattccgaaactttttcataaa  18964600                                                               --------->YAB1                                                     ------>ZmHOX2a(2)                                   =========================HOX2a_HOX2a             --------->LBD16                                   ========================HOX2a_HOX2a             --------->TOE1(2)                            ----------->HVH21      <---------AGP1                  <---------LBD16                          --------->ANAC58         <---------ARR14(2)        <----------DOF2                 --------->MYB52(1)<------ZmHOX2a(1)<------ZmHOX2a(2)       <---------DAG2      ---------->DOF2     --------->ANAC46         --------->ARR14(2) <---------ICU4------>ZmHOX2a(1)    <------ZmHOX2a(2)   ---------->DOF2           <---------CCA1(2)--------->WOX13(1) --->DOF2    <-------TEIL --------->ANAC58        <---------ARR14(1) <---------ATHB12--------->LBD16   gaatagatcaaagcatacataccagttcaagcgaccaggaagacgattaatcggatctaatacaatcttcaatcactgcctttttcctgggaaatttttg  18964700                                                                                     <---------At5g28300                                                                                    <-----------GT1                                                                                  *TSS                                                                               --------->ARR14(2)                                                                               <---------ARR14(2)                                                                               <---------ARR11(3)                                                                               --------->ARR11(3)                                                                              <---------CCA1(2)                                                                              <---------GLK1(1)                  <-----------GT1        <-------MYC3                         --------->GLK1(1)            <---------ALFIN1             ------->MYC3                         <---------RVE1(1)           <------NtERF2                 <-------MYC2                        --------->ARR14(2)          ------>NtERF2                  ------->MYC2                    <---------LBD16         --------->PCF2           ---------->DOF2           <-----------GT1  <---------ARR14(2) -----        ------>NtERF2         --------->ZAT6    ---------->ID1       ------>ZmHOX2a(1)        <------   tttctctctcggccccaattttacgaacgatgacactaaagaacgtgtttggctccttgtttaaactaatcctctctcggatatcttcaccgtttcaagg  18964800                                <----------ID1                           ---------->DOF2                          <---------WRKY12                          <---------WRKY38(1)                         --------->WRKY18(1)                        <-----------HVH21                       <------MYB83                      --------->MYB59                     <-------TEIL                ----------->GT1                    <---------MYB52(1)          <---------ARR11(3)                    <------NtERF2          <----------ID1<--------ZAP1          <------ZmHOX2a(1)                    <---------ANAC46        <-----------GT1<------MYB46(1)      <-----------RAV1(2)           --------->ARR11(3)    <---------ZAT6 <---------SPL7         <-----------HVH21               <---------ARR11(3) ---->YAB1--------->ANAC46<---------WRKY45<-----------TGA1               <---------CCA1(2) ---TOE2(3)     --------->MYB52(1)       --------->ANAC46    <-----------GT1     --------->ANAC46   atagtagtataaacgacataacgttcggtcaaagagaacaaaaacgtcaggatgttattctattaaacgtctgatatatctatacggcgtagttttgaag  18964900                                                              --------->GLK1(2)                                                              --------->ARR14(2)                -----                                                              <---------ARR14(2)         --------->ARR14(2)                                                    ------>MYB83                         <---------ARR14(2)                                                    ------>MYB46(1)                      <---------MYB52(1)                                                   --------->MYB55(1)                   <-------GAMYB                                                  <---------MYB46(2)                    <-----------HVH21                                                  <---------MYB111(1)                 <---------ANAC46                                                  <---------MYB59                    <---------------                                    <------ZmHOX2a(1)        <---------CCA1(2)    <---------ANAC58    *TSS                        <--------P   --------->At4g35610                  <---------ANAC58 --------->ETT(2)        --------->ZAT14     <---------At4g35610           <-------TEIL<---------MYB46(3) <---------ETT(2)        <---------ZAT14  <---------At4g35610<---------GLK1(1)<---------At4g35610 ---   ttgtcgactattcttcatcgttctctctgctctggtaaggagattgctgctacctactgatgcaaatctgccattgatacatctgcttgcggttagggca  18965000         --------->ANAC58         --------->ANAC58      --------->ARR14(2)                                                  --------->ANAC46      <---------ARR14(2)                                      --------->At4g35610     <------ZmHOX2a(1)                 <---------GLK1(1)      <---------At4g35610 ----->DOF2                           <---------ARR14(2)    <-----------RAV1(2) ------WRI1                       <---------LBD16   --------->ZAT14   <-----------GT1         <------ ------>ICU4        <----------DOF2   --------->ARR14(2)  <-----------HVH21             <---------YAB1   aagatgaggaaacgcgatttggctattttgatgctctctggatttgctatattcttcactcttcaggtgattttacacactaatcgtcttcttattcttt  18965100                                 -------->ATHB1                                 <---------ICU4         ---------->DOF2                                 --------->ATHB12 <---------ANAC46                 --------->At4g35610              --------->ANAC55(2)                 <---------At4g35610    ------>ZmHOX2a(2)        --------->AHL20(2)      <---------YAB1    <---------ANAC58            <---------MYB46(3)        --------->YAB1     --------->HSFB2a(2)    <---------ANAC58       <----------DOF2       <---------ATHB12    <---------HSFB2a(2)    <---------ANAC55(2)  ----------------->AGL1     --------->WOX13(1) --------->ARR11(3)     <---------MYB52(1)    <-----------GT1 ----DOF2    <---------REM1(1)--------->YAB1------>ZmHOX2a(2)<----------DOF2 <---------ANAC46 <------   cttagttcaatcaaattgtagctgaacatctagaatcattgatcgatctgttacttgagaaagctttgaattttcctttgtgggtagaacttagactgct  18965200                                                                                        <---------ANAC58                    <---------YAB1                                                      <---------ANAC58        <---------MYB52(1)                                                        <---------ANAC46       --------->LBD16                                                            <---------ANAC58      <---------ANAC55(2)                                                         <---------ANAC58      --------->ANAC55(2)                  --------->HSFB2a(2)                   <-------TEIL     ------>ZmHOX2a(2)                     <---------HSFB2a(2)                  <---------ANAC46    <------ZmHOX2a(2)                <---------GLK1(2)                       <-----------RAV1(1) ----   --------->ARR14(2)        --------->ARR14(2)         <---------ATHB12  <---------AHL20(2)   <-----   <---------ARR14(2)        <---------ARR14(2)       --------->MYB52(1) <---------YAB1 --------->ANAC55(2) ---At4g35610  <---------ZAT6--------->GLK1(2)      --------->MYB46(3)<---------YAB1--------->DOF5.7(2)   aattcgatccgtaagtagtgtcatgttagcgaatttgtagaatttccagatggaaccaatggattcaattttcttattaatggtgcgtttacttgatatg  18965300                                                                                        <---------ZAT2                                                                                        --------->At4g35610                                                                                        <---------At4g35610                                                                                       ------->TEIL                         ----------->GT1---------->DOF2                             --------->ANAC46           <----------DOF2         <---------ANAC58                         <-----------HVH21 ------>ZmHOX2a(2) ----->ALFIN1         ------->PIF5 <---------ANAC46               <---------YAB1 <---------ARR14(2) ------RAV1(1)        <-------PIF5 <---------ANAC58             --------->YAB1   --------->ARR14(2) -   tgggacttgatgacttttgcagcacgagggtgattttgcgttcaaagaagcatggtttcatttgtatgatgaatacccagtcaaatacgaagctgatcgt  18965400  Previous    Next  AGI:  At3g51040.1    Description:  RTH (RTE1-HOMOLOG). similar to RTE1 (REVERSION-TO-ETHYLENE SENSITIVITY1) [Arabidopsis thaliana] (TAIR:AT2G26070.1); similar to green ripe-like 2 [Lycopersicon esculentum] (GB:ABD34617.1); contains InterPro domain Protein of unknown function DUF778 (InterPro:IPR008496) Range:  from: 18963103    to: 18964782    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g51050.1    Description:  FG-GAP repeat-containing protein. similar to hypothetical protein OsJ_004866 [Oryza sativa (japonica cultivar-group)] (GB:EAZ21383.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48276.1); similar to hypothetical protein OsI_005300 [Oryza sativa (indica cultivar-group)] (GB:EAY84067.1); contains InterPro domain FG-GAP (InterPro:IPR013517) Range:  from: 18964904    to: 18968937    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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