Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                      <-------TEIL          ---------                                                                  --------->MYB52(2)        ---------                                                                <---------MYB52(1)          <--------            --------->ICU4                                   ------>ZmHOX2a(2)              ---------       ----------->GT1                                      <------ZmHOX2a(2)        <---------ICU4    <---------CCA1(2)                  <---------At4g35610 --------->ARR14(2)     --------->YAB1  --------->YAB1      <---------ICU4   --------->At4g35610 <---------ARR14(2)  --------->YAB1   catatcatatcgtaagaattgtgaacattacatctatcttcagcgtaaacatttttctagggatcccttagtttcatagaattatcaacatgactcgtaa  18962600                                ------>ZmHOX2a(2)                               <------ZmHOX2a(2)                           <---------TOE2(2)                           <---------TOE1(2)                          ------>ZmHOX2a(1)                          =================================HOX2a_HOX2a                          =============HOX2a_HOX2a                  ------>MYB83<---------ARR14(2)                  -------->P  <-----------ARR10                  ------>MYB46(1)                 =====================HOX2a_HOX2a                 ------>ZmHOX2a(1)             =======================HOX2a_HOX2a             ------>ZmHOX2a(2)--------->ARR11(3)                    <---------AHL20(2)             ====================HOX2a_HOX2a        --------->CCA1(2)            --------->GLK1(1) <---------ARR11(3)    <------ZmHOX2a(2)       <---------ICU4    --------->TOE1(2)         --------->AGP1  --------->AHL20(2)      --------->ICU4  ------>MYB46(1)              --------->ARR14(2)      <---------YAB1--------->AtMYB61    --------->YAB1         --------->YAB1 --------->ANAC46======================HOX2a_HOX2a <---------ARR11(3) >ANAC58    <---------GLK1(1) --------->ARR14(2)   <---------ARR14(2) >ANAC55(2)<---------ARR11(3)==============================HOX2a_HOX2a -->GT1--------->YAB1 ------>MYB83      <---------TOE2(3)      <---------YAB1                       - -ANAC55(2)--------->ARR11(3)<------ZmHOX2a(1)    <---------At4g35610                  --------->AtLEC2 >ANAC58 <---------YAB1  --------->TOE2(2)        --------->At4g35610        --------->YAB1  --------   tataagtcattatgatctcctaccaatcctaggatctaatctatggtaatgcagatccaagaattgtcataaaattcaaacatgaattcatacaaaaaag  18962700                                                        ------->GAMYB                                                      --------->ANAC58                                                      --------->ANAC58            --------->YAB1     --------->YAB1                                   -------->P               --------->YAB1<-------     <---------ICU4           <------ZmHOX2a(2)   --------->ANAC58             <---------ICU4--------    <---------YAB1           <---------ARR11(3)   --------->ANAC46          --------->YAB1   <-------  <---------CCA1(2)    <---------YAB1             --------->ANAC58     <---------ATHB12      <------- -------->YAB1 <---------ANAC58             <---------AHL20(2)       ------>MYB83 <-----------GT1 -->DOF2       <---------ANAC58             --------->AHL20(2)       ------>MYB46(1)        <--------   aatcatatcattacattgcttaagtatgagagatcaaagactctatttaaaaacgcaacccaaaacaaaccaaatcaagaataataacaaatccatatct  18962800                                                                                                  ---                                                                                                <----                        >>>>>>>>>SARD1                                             <---------ANAC58 --ARR11(3)             >>>>>>>>>CBP60g                                 --------->At4g35610     ===== ->ARR14(2)          <---------ARR11(3)                                 <---------At4g35610     ----- --ARR11(1)        --------->ANAC58                               ----------->RAV1(2)         ------- ----ARR10         --------->ANAC58                      --------->ATHB12          <---------ANAC58 -CCA1(2)       <---------ATHB12                        <-------TEIL    <---------ZAT2     --------->MYB52(1)   catcaaaaacaaaatgaaatcaagaaatttgggagaagaagattacaagagttttggattcattagccttctgaagctgctcgttccatgtctcaacggt  18962900           --------->ANAC55(2)           <---------ANAC55(2)        =================HOX2a_HOX2a   --------->ANAC58   --------->ANAC58 <-----------RAV1(2) ------>ALFIN1             --------->ANAC58 -------RAV1(1)            --------->ANAC58          <---------ZAT14 ============RAV  ------>ZmHOX2a(1)                  <------------------------ANAC81               <- ---->ALFIN1   ---------->ID1                        --------->ZAT14                               <- >GAMYB <------ZmHOX2a(2)--------->LBD16 <----------DOF2             ------>ZmHOX2a(1)      ---------   gtggcaggcgatcacttgtccttcttccgaagccatcttctctctttttcttctctgttctgtttcttctcctcttgtgttttttttttttcaattactt  18963000                 ------>MYB83                 ------>MYB46(1)             ------>MYB83             ------>MYB46(1)             -------->P            --------->MYB55(1)                                                                -------           --------->MYB46(3)                                                                ------>MYB46(1)           <---------MYB111(2)                                                               ------>MYB83           <---------MYB46(2)                                                               ---------           <---------MYB55(2)                                                              --------->MYB46(3)           <---------MYB111(1)                                                             --------->DEAR3(1)          --------->At4g35610                                                              <---------MYB55(2)      <-----------HVH21                                                                    <---------MYB111(2)     --------->ANAC58                                            <---------ANAC58         --------->ANAC58     --------->ANAC46                                            --------->ANAC55(2)      --------->ANAC46     --------->bZIP60(2)                                         <---------ANAC55(2)      --------->ANAC58     --------->ANAC58            ------------>CBF                <---------ANAC46  --------->YAB1   <---------ANAC58            --------->ANAC46                  <---------ANAC58  --------->ATHB51   <---------ANAC58        <-----------GT1                      ------>NtERF2      <--------HAHB4 --------ANAC58 --------->WOX13(1)                    <----------DOF2              <---------ICU4 --------ANAC58--------->AtMYB61<-----------HVH21     <---------DAG2              <---------ATHB12 >AHL20(2)<---------At4g35610  *TSS        <-----------GT1  ----------->HVH21     --------->ICU4 <---   agcatgcgcgtcacctaccaatcccaattttgcccgtcaatagtttttctcttctactttattcgacgcgtgattttgtttcccataattacacccacca  18963100                                                                                    --------->ANAC58                                                                                    --------->ANAC58                                                                                  ---------->DOF2                                                                <-----------GT1--------->ANAC58                                                           <---------ANAC58    --------->ANAC46                                                ------>ZmHOX2a(1)              --------->ANAC58     <----------DOF2      <---------YAB1  <-----------GT1  <---------ANAC46  <---------ALFIN1     --- ----->CBF              --------->YAB1 <----------DOF2     <---------ANAC58------->GAMYB          --- >ANAC46               <---------ATHB12<---------DAG2    <-----------GT1  --------->MYB46(3)--------- ---------CBF<----------DOF2      <-----------GT1 ---------->DOF2       <-----------GT1---------->DOF2   attgctactttccttctttacccaaatcataaatattcacacttttactcctcaaagttttacttgtaacaaattaaccacacacaaagcaaagttgtaa  18963200            ----------->GT1                                                 <---------ANAC58           --------->DAG2                                                   <---------ANAC58      --------->TOE2(3)                                        <---------At4g35610     ----------->GT1                                           ----------->RAV1(2)     --------->YAB1                                            --------->At4g35610               <--- ------>CCA1(1)                                                <---------ZAT2                    ---- ------>RVE1(1)                    --------->ATHB12     --------->ARR14(2)  <---------ANAC46    ----- -->GT1   ---------->DOF2    --------->ETT(2)   <---------YAB1 --------->ZAT2                   <----   atatccatcgtaaaaagtaaaaaacattttgtagacatcatttgtacattatgattcaaatctacagctgaatcagtttcttgaaacaatacgttccaat  18963300                                                        <---------ALFIN1         --------->LBD16                                --------->AtMYB61       <---------LBD16                                  ------->GAMYB      ------>MYB83                                     <---------MYB111(2)      ------>MYB46(1)                                  --------->MYB46(3)    --------->AtMYB61                         ---------->DOF2    <---------ALFIN1                         --------->YAB1                                      ----   --------->MYB46(3)                       <---------ATHB12                  <---------ZAT14  <-----  ------->TEIL                          <------NtERF2 ------>MYB46(1)   ------>ZmHOX2a(1) --------->ALFIN1 ------ICU4  --------->ANAC58          --------->ANAC58<---------MYB52(2)     --------->ZAT14 ------- ----->YAB1<--------P                  --------->ANAC58<---------MYB55(2)    <---------ZAT6   ------- ---->ICU4<---------MYB52(1)         <------ZmHOX2a(1)-------->P    --------->GLK1(2)  --------->ATHB12 -----ATHB12 --------->ANAC58     <-----------RAV1(2) ------>MYB83 <---------GLK1(2)  <---------YAB1   gatgaaccacccggtaagcaaaaccactagaatcgagcaggaggcaatgaaagtccaaccaccgagtaagattcctatagtgtagactatgagtggaggc  18963400                               ------>MYB46(1)                         ------->MYC2                               ------>MYB83                            <-------MYC3                               --------->MYB52(1)                      <-------MYC2                              --------->MYB55(1)                    <---------ALFIN1       <---------ZAT14       --------->MYB46(3)                   <---------At5g28300  <----------DOF2      <----------DOF2        <---------MYB55(2)         <---------ANAC46         ----------->RAV1(2)   <------ZmHOX2a(1)        --------->ANAC58          <-----------HVH21------->MYC3----------->HVH21 ------->RAV1(1)            --------->ANAC46         <-----------RAV1(1)       ------->GAMYB -NtERF2           <---------MYB52(1)        --------->ANAC58    <-----------GT1--------->LBD16 -->ANAC58        <---------RAP2.6(3)      ---------->DOF2      <-------TEIL  --------->MYB46(3)    < -->ANAC58<---------YAB1    --------->ANAC58 --------->ANAC58 --------->ARR14(2)------>NtERF2  ------   aacaaggactttactatagccgttttgttcacccaacgtcccttgaaaagcactagtgtcgcgagattcaccacgttccatccgcctgactttatagata  18963500  Previous    Next  AGI:  At3g51030.1    Description:  ATTRX1 (Arabidopsis thaliana thioredoxin H-type 1); thiol-disulfide exchange intermediate. Identical to Thioredoxin H-type 1 (TRX1) [Arabidopsis Thaliana] (GB:P29448); similar to ATTRX5 (thioredoxin H-type 5), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G45145.1); similar to putative H-type thioredoxin [Citrus cv. Shiranuhi] (GB:ABL67654.1); contains InterPro domain Thioredoxin family (InterPro:IPR015467); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin fold (InterPro:IPR012335); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains Int Range:  from: 18961977    to: 18963031    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g51040.1    Description:  RTH (RTE1-HOMOLOG). similar to RTE1 (REVERSION-TO-ETHYLENE SENSITIVITY1) [Arabidopsis thaliana] (TAIR:AT2G26070.1); similar to green ripe-like 2 [Lycopersicon esculentum] (GB:ABD34617.1); contains InterPro domain Protein of unknown function DUF778 (InterPro:IPR008496) Range:  from: 18963103    to: 18964782    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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