Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                   --                                                                                                   --                                                                                                   <-                                       ------>ZmHOX2a(2)                                         <---                                       ==========================HOX2a_HOX2a                  -------                                      ===========================HOX2a_HOX2a                  -------                                      <------ZmHOX2a(2)                                       -------                               --------->DAG2                            ------->TEIL<---------ANAC58                          ----------->GT1            ------>NtERF2    --------->AtLEC2     <---------ZAT18       <---------ZAT6 --------->ZAT14--------->ARR14(2)      <---------SPL7          <---------ANAC58 --->MYB52(1)         <---------ZAT14<---------ARR14(2)   <------ZmHOX2a(1)          <---------ANAC46   cggattatagtgtttacgactaactacagagaaaaattggatccagcattgttgaggccaggacgtatggacatgcacattcacatgtcgtattgcacac  18946300         <---------TOE2(3)         <---------TOE1(3)    <----------DOF2                                       <---------At4g35610 --------At4g35610                         <------ZmHOX2a(2) ------->ZAT2                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------->At4g35610                        <---------ARR11(3)                                      --- --------ZAT2                             --------->ARR11(3)                                      <-- --------RAV1(2)                     <-------TEIL  <----------DOF2                     <---------TOE2(3) -->ANAC58                          --------->CCA1(2)   <---------HSFB2a(2)   --------->HSFB2a(2) --- -->ANAC46                          --------->GLK1(2)   --------->HSFB2a(2)   --------->LBD16-------- -->ANAC58                 --------->ARR11(3)      <---------DAG2             <---------HSFB2a(2)----   cagctgcttttaaggttttggcttcgaattatctcgagattcaagatcatatacttttcgagcagattgaagaatttatccgagaaattgaagttacacc  18946400       --------->At4g35610       <---------At4g35610                                                      --------->ANAC58 ------>At4g35610                                                               --------->ANAC58 -------At4g35610                        --------->DAG2                       ---------->DOF2 ------>ZAT2               ----------->HVH21         <------ZmHOX2a(1)  --------->ANAC58 ->REM1(1)   --------->MYB46(3)         ---------->DOF2                 --------->ANAC58         ---- ------->RAV1(1)        <------ZmHOX2a(1)<---------------AtSPL8       ---------->DOF2  ----------->GT1   agcagaagtagctgaacaactgatgaggagtgactctgtggataaagtactccaaggacttgttgagttcttaaaagccaagaagcaaatagataattca  18946500                                                            <---------MYB46(3)                                                            ----------->GT1                                                         <------------CBF                                                        <--------ATHB1                                                        -------->ATHB1                                                        --------->ATHB51                                                        --------->ATHB12                                                       --------->ICU4                                                       <---------ATHB51                                                       <---------ATHB12                     <--------                                                       <---------YAB1                   <---------ICU4                                                     <---------------AGL15             <---------ATHB12                                                    ------------>ATHB5          ----------->GT1                                                  --------->AtLEC2             --------->DAG2                                 <----------DOF2  --------->ANAC58            ---------->DOF2                             ---------->ID1       --------->ANAC58         <---------HSFB2a(2)                      <---------AHL20(2)        --------->YAB1    --------->AHL20(2)   --------->ICU4 ------>DOF2        <----------DOF2       --------->ZAT6<---------ICU4     --------->HSFB2a(2)   aaagcttagaagaaatttagttcttttatttgtttctttgttaaacactatcatgcaattattggttataaaatgttacagaaagtgaaatcattttttt  18946600                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                                  <--                 --------->ARR14(2)                                                              ----                 <---------ARR14(2)                                                            ------                 --------->ARR11(3)                           --------->GLK1(2)                <-----               --------->LBD16                               <---------GLK1(2)                 <-----              <---------ANAC46  <-----------HVH21      --------->YAB1                  <---------ANAC58   ------>ZmHOX2a(1)           <---------bZIP60(1)     *TSS----------->ARR10           <---------ANAC46  --------->TOE2(3)<------------CBF                   <---------ATHB12       <----------ID1  <------- -AHL20(2)   <---------LBD16   --------->bZIP60(1)------------>CBF---------->DOF2      <---------ANAC58   ttttcctaagtgaaatgcggatattgttttatgaggtcagaacatgtctaaactcaatgataagattctaaagtagattgagacaagtttcgtagtcggc  18946700        --------->ANAC58 -------At4g35610 ----NtERF2 ------>At4g35610                 <---------ANAC58 -------ZAT2                      <---------ANAC58 ------->RAV1(1)           >>>>>>>>>>>>WRKY18 --->At4g35610          --------->WRKY12                                                 --------->HSFB2a(2) ----At4g35610      --------->MYB59 ----------->GT1                                      <---------HSFB2a(2) -NtERF2--------->ANAC58--------->WRKY38(1)    --------->WRKY12 --------->DAG2<---------At4g35610 --DEAR3(1)         <---------TOE2(3)    <-----------GT1       ---------->DOF2--------->At4g35610   agcagtaaccaagaaaacgagtaaggttgactcttgacttgttaaaccattgacttcaatttcgataaagtctctatgtaagctcatttttctgaaacaa  18946800                                   <---------HSFC1(2)                                   --------->HSFC1(2)                                   ------>ZmHOX2a(2)                                 --------->ARR14(2)                                 --------->ARR11(3)                                 <---------ARR14(2)                     ------>ZmHOX2a(2)                     =======================HOX2a_HOX2a                    --------->CCA1(2)                    ========================HOX2a_HOX2a                    <------ZmHOX2a(2)                   <---------ARR11(3)                   --------->ARR14(2)                   --------->AGP1--------->AGP1<---------TOE1(3)                   <---------AGP1<---------ARR11(3)                   <---------ARR14(2)          <---------TOE2(3)                   <---------MYB46(3)                   --------->ARR11(3)------>ZmHOX2a(1)                          <----------DOF2                 ----------->ARR10<------ZmHOX2a(2)                        <---------DAG2               ---------->DOF2   <---------GLK1(2)                         <----------DOF2        --------->AHL20(2)      <---------At4g35610                     <-----------GT1----------->ARR10   gttttgctaaaaaaatccaaagatctgaagcttcagatccttctcggctaaggctaagtcacaaccttgtaagtttactttactttggttagatttgttt  18946900                                                                                          <---------WOX13(1)                                                                                          <--------P                                                                                         <---------ANAC58                                                                                         <---------ANAC58                                                                                        --------->MYB55(2)                                                                                        <------MYB46(1)                                                                                        <------MYB83                                --------->CCA1(2)                                       --------->MYB52(2)                               --------->ARR14(2)                                       <---------MYB46(3)                               --------->ARR11(3)                                      <---------TOE1(2)                      <---------ANAC46                                                 <---------TOE2(2)                      <---------ANAC58                    <---------ATHB12             <---------AtMYB61         <---------GLK1(2)     <---------ARR14(2) <---------KAN4(1)                   <---------MYB52(1)        <------ZmHOX2a(1)      <---------ARR11(3) --------->KAN4(1)                 <---------MYB46(3)     >>>>>>>ZML2      <---------ANAC58      ---------->DOF2 <----------DOF2--------->GLK1(2)  <------     <---------HSFB2a(2)       --------->ARR11(1)<---------KAN4(2)        <---------GLK1(2) ---------     --------->HSFB2a(2)     ----------->ARR10  --------->YAB1          <---------TOE2(3)<-------GAMYB   caatgttctaggattctacatgtttcttgagaagatatggattagttaaagaataatccaatcttttggttattgagattctatagtcgttggttgattg  18947000                                                                                <---------ANAC58                                                                                <---------ANAC58                                                    <------MYB46(1)        <---------RVE1(1)                                                 <---------ANAC58          <---------CCA1(1)                                                 <---------ANAC46         <---------ARR11(3)                                            --------->ATHB12              --------->ARR11(3)                                            -------->ATHB1        --------->WOX13(1)                                --------->MYB52(1)  <------MYB83 --------------->AGL15                             --------->ANAC55(1) <---------ANAC58<---------------AGL15                             --------->ANAC46   --------->ATHB12----------------->AGL1                         --------->CCA1(2)  <---------ICU4      ----------------->AG     ---------->DOF2  <---------YAB1        --------->ATHB51    ----------------->AGL3 ---WOX13(1)        --------->YAB1         <---------ATHB51     ----------------->AGL2    <---------AtLEC2 >ATHB12           <---------ZAT6          --------->ICU4     <-----------GT1   <---------ANAC46   atttttggaaagttcaatctagtgatgatacacataaccgattgaattattgcttggttatagtttaccaattagagatatttcttgaagttgcagggtc  18947100                                                                     --------->ARR14(2)                                                                     <---------ARR14(2)                                                                    <------NtERF2                                                                    <---------SPL7                                                                   --------->RAP2.6(2)                                                     <---------HSFB2a(2)   --------->ARR14(2)                     <-----------GT1                 ------>ZmHOX2a(1)--------->SPL7                  <---------REM1(1)                  --------->HSFB2a(2)   <---------ARR14(2)       <                <-------GAMYB             --------->TOE1(3)     <----------ID1                     --         <---------SPL7                   --------->TOE2(3)  ---------->DOF2       --------->MYB52(1)   tgagtaaatggtggacgctgttgtaacagtgtttttagagaaaaccttgaacatcctcgaagaaaaaggccgaaccgtatcggactaccgaaaacagttg  18947200  Previous    Next  AGI:  At3g50940.1    Description:  AAA-type ATPase family protein. similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G50930.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63838.1); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959) Range:  from: 18944744    to: 18946592    Orientation: Forward Links:  TAIR  MIPS    AGI:  At3g50950.1    Description:  disease resistance protein (CC-NBS-LRR class), putative. Identical to Disease resistance RPP13-like protein 4 (RPP13L4) [Arabidopsis Thaliana] (GB:Q38834;GB:Q0WUW7;GB:Q9SVK4); similar to RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8) [Arabidopsis thaliana] (TAIR:AT5G43470.1); similar to RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8) [Arabidopsis thaliana] (TAIR:AT5G43470.2); similar to hypothetical protein [Vitis vinifera] (GB:CAN63363.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48323.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain NB-ARC; (InterPro:IPR002182); contain Range:  from: 18946655    to: 18949780    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version