Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                           ----------->GT1 ----->YAB1                         ---------->DOF2                   <---------DAG2 ----------->GT1 ---->ICU4                  --------->ZAT14                         --------->ARR11(3) ----KAN4(2)                <---------ZAT14       --------->MYB52(1)<---------ARR11(3)       --------   gatcaacatatcagttttagtttttaagagtaaactctgaaagaagaaaaaaaaacagagaagaagatgagaccttatgaagatgaaatgttatatcatc  18909200                                                        ---------->DOF2                       --------->ANAC58       --------->ANAC46 <---------AHL20(2)                       --------->ANAC58      ------>MYB83     --------->AHL20(2)           <---------YAB1                <---------O2               --------->AtMYB61<---------ARR11(3)        <---------ICU4- ->YAB1     <-----------HVH21 ----------->GT1------>MYB46(1)--------->ARR11(3)  <---------YAB1 ------   aacttcgatttctatgtcacttggtaagcctgtggtataaaaaaacctacacaagagataaagattttataagtatttgaatatgaaaacattactattg  18909300                                     <---------ANAC46                                   --------------->AGL15                               --------->RVE1(1)                                   <----------DOF2                                    --------->ARR11(3)                                  <---------ANAC58                                    <---------ARR11(3)                              <---------ANAC58                                   ----------->GT1                            <---------YAB1                                     ---------->DOF2 -------->AHL20(2) <<<<<<<<<TBF1  <---------ANAC58                         ---------->DOF2 ----->GT1     ---------->ID1 <---------ANAC58                         <----------ID1 --------->GLK1(2)   aaaaaaatgagtgttttgttcttcttcaccatgcttgcttcttggagttagccattggagaaaatcacagaaaaaaacaaagaaagaaaatctctcgatg  18909400                                                                                          <----------                                                                                       <---------AHL20(2)                                                                                    <---------ICU4                                                                                    <---------AHL20(2)                                                                                   --------->AHL20(2)                            <---------LBD16                                      --------->YAB1                        <---------AHL20(1)                                 --------->TOE2(3)                        --------->AHL20(1)  ----------->GT1               <---------At4g35610                        <---------AHL20(2) --------->DAG2                 --------->At4g35610    <--- --------->ALFIN1      --------->AHL20(2) ---------->DOF2             <----------DOF2  <---------ICU4   gaagtggaagctattgggaatgagattatattcgggtttttgagaaaagtgaatcgagttttttgatcaattctttagcttaataataaatatttctgtc  18909500           ---------->DOF2   <---------DAG2                                          --------->ANAC58   <----------DOF2                                   --------->GLK1(2)  <---------ANAC58                                  --------->ARR14(2)                       <-------  <---------ANAC58    <---------WOX13(1)            <---------GLK1(2)                       --------- -GT1    <---------YAB1                      --------->MYB46(3)                    ---------->DOF2--- -------DOF2        --------->ATHB12        ---------->DOF2--------->ANAC58---------->DOF2  ---------   ttttgctttttataaaaggaattgattgtttaatatttggatgcagaacagccagaatctcaagaaattgggcattgaaaagaggcaaagtcgcactcat  18909600                                                        <--------ATHB1                                                        -------->HAHB4                                                        <---------ICU4  *TSS<-----------GT1                                  --------->ICU4 --ATHB12                                              <---------YAB1 >ANAC58                       <-----------GT1       <---------ICU4 -------->GT1            <---------DAG2           <---------ANAC55(2)    <---------MYB46(3) >ANAC58                 <----------DOF2          --------->ANAC55(2)--------->ATHB12            ----   ttgttaataaactccctccaaattttgctttataaacttcttatttgtgaatacataatgattctaactaatctttggttagagtattttttaaaaaaaa  18909700                      <---------TOE2(3)                      <---------TOE1(3)                    <---------ICU4                    --------->YAB1                   <---------ATHB51                   <---------ATHB12                <---------------AGL15                --------------->AGL15                         --------->AHL20(2)               ----------------->AGL2         --------->CCA1(2)               ----------------->AGL3         --------->ARR14(1)                                 <---               <-----------------AGL2        --------->ARR11(3)                             <--------               --------->MYB46(3)            --------->ARR11(1)                             ---------       --------->ARR11(3)                    <---------ARR11(3)       <---------AHL20(2)  --------->YAB1       --------->GLK1(2)                     <---------ARR14(2)     <---------YAB1        -------->HAHB4       <---------ARR11(3)         --------->LBD16             --------->AHL20(1)          <---------ICU4      --------->RVE1(1)         <---------LBD16 <---------AtMYB61  <---------AHL20(1)    <---------YAB1    <---------AHL20(2)<---------YAB1         --------->ARR14(2)  <---------YAB1          --------->ICU4   --------->YAB1  --------->ICU4<---------ANAC46    <------NtERF2 <---------AHL20(2)  --------->YAB1  ----------->TBP--------->WOX13(1)        ----------->ARR10  <---------AHL20(2)      <---------AHL20(2) ----->ZAT6    <-----------------AGL3    ---------->DOF2      <---------AHL20(1) ------->TEIL--------   cactataaaaatcttcaaccaattatggttttaatgcggataacaaagatatggtggcccaaaatttattatttttttgtatgtatatataatgatgatt  18909800                                                        --------->ARR11(3)                                                        <---------ARR11(3)                                                   --------->AHL20(2)                                                   <---------AHL20(2)                                               <---------AHL20(2)                                               --------->AHL20(2)                                               <---------YAB1             <---------YAB1                   <---------AHL20(1)                           ----------           <---------ICU4                     --------->AHL20(2)                    <---------YAB1     --------->TOE2(3)                        <---------AHL20(2)      ------->TEIL--------->YAB1 ------AHL20(2) <----------DOF2            --------->AHL20(2)  <---------YAB1     <---------ICU4 -YAB1     --------->YAB1                  --------->YAB1--------->CCA1(2)       <---------ATHB12 >ICU4  --------->WOX13(1)              --------->YAB1<---------TOE2(3) --------->YAB1 <----------DOF2 ->ATHB12 <---------ATHB12<-----------RAV1(1) --------->AHL20(1)  ------->TEIL --------->WOX13(1)----   taaaatgcctcaatcatgctttgaaaatttgttgggacagaacaataatataatttaagatatatatgaatgtatcaaaatcaatcatgctttcaaagtc  18909900                                                                                                 <---                                                                                                 ----                                                                                           --------->MYB46(3)                                                                                          >>>>>>>>>MYB98                                                                                         --------->MYB52(1)                                                   <-----------GT1                       ------>MYB83            <----------DOF2                    ------->TEIL                              ------>MYB46(1) >DOF2 <<<<<<<<<TBF1                   --------->ZAT6                 --------->ATHB12 <---------MYB59 ----->WOX13(1)           <----------DOF2     <---------AtLEC2 --------->YAB1   <---------ZAT6 <-----   attcatttcttcttctttctatcaaacccttttgtgagttatctctatgcatgttacaatttgtataagaattcatttgagagagttaacctaacaaatg  18910000                                                                               <---------AHL20(2)                                                                               <---------AHL20(1)                                                                               --------->AHL20(1)                                       <---------MYB46(3)                  <---------CCA1(1)                                       ----------->GT1                     <---------RVE1(1)             --------->At4g35610  --------->MYB46(3)                      --------->AHL20(1)             <---------At4g35610 -------->P                               <---------ARR11(3)         <----------DOF2        --------->MYB52(1)                        --------->ARR11(3)    ----- ------------AtSPL8       --------->YAB1           <---------MYB52(2)     <---------AHL20(1)  ------- ----------->AtSPL8 --------->ANAC58  <---------ATHB12             XXXXXXXXXXXXXXXXXXXXX>MIR447A/B ------RAV1(1)      --------->ANAC58--------->MYB52(1)          --------->AHL20(2)    ----------->RAV1(1)   ttgtactcattctttagatgacaaacaattagactaaccaatggttaagtcaaactaactcgttgattaaaaacaagatattatattgccacataaacaa  18910100  Previous    Next  AGI:  At3g50840.1    Description:  phototropic-responsive NPH3 family protein. similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT5G66560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41614.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain BTB/POZ-like; (InterPro:IPR000210) Range:  from: 18907156    to: 18909602    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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