Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                 <---                                                                                                 <xxx                                                                                                 ----                                                                                                <----                                                                                              <------                                                                                              -------                                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                    --------->YAB1      xxxxxxxxxxxxx                                                                    <---------ICU4    --------->LBD16                                                              <------ZmHOX2a(1)      --------->HSFB2a(2)       ------->TEIL                                         --------->LBD16          <---------HSFB2a(2)    <---------ANAC55(2)                                    <---------HSFB2a(2)      <---------LBD16    --------->ANAC55(2)                                    <---------LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------ZAT14                        <---------CCA1(2)      --------->HSFB2a(2)    xxxxxxxxxxxxxxxxxxx ----->ZAT14       --------->ARR11(3)                 <---------------AGL15xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----GT1         <-------TEIL    <----------DOF2      <----------DOF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   actctcatgtaactataaatacatcttgtatgtttcttttatctcattctctcattcttttccaggaaaatcataacaaaaacatttctgggaaaatcat  18875400                                                     <---------ARR14(2)                                                     --------->ARR11(3) ------>TOE2(3)                                   --------->YAB1 ------ICU4                                    --------->YAB1 xxxxxxxxxxxxxxxxxxsmallRNA(l2)  <---------ARR11(3)  <---------ARR11(1) ----->YAB1                      <---------ARR11(1)  --------->ARR14(2)     <---------YAB1        --- -----YAB1                       --------->ARR11(3)  <---------ARR11(3)     ------>ZmHOX2a(1)     --- ---ICU4                         --------->ARR14(2)  <-----------ARR10     --------->TOE2(3)      --- -->YAB1      <---------ARR11(3) <---------ARR14(2) <---------CCA1(2)    <---------YAB1       ------- xxxxxxxxxx>smallRNA(fl3)       <---------CCA1(2)<---------YAB1     --------->YAB1  <---------TOE2(1) xx>smallRNA(si3)      <-------TEIL            <---------ICU4      <-------TEIL     <---------TOE1(1)   catcaattttcaacaatttcttcgattcatcttcatatcttcatcttcatcatcatatcttctccaaaattcatcatccttattgtacgatgagagaatc  18875500                                          ------>MYB83                                          ------>MYB46(1)   <----------DOF2                                        --------->AtMYB61  <---------ANAC58 ------>ANAC46                      --------->MYB46(3)----------->GT1 ------>ANAC58                <----------DOF2     --------->ARR11(3) --------->YAB1                -- ------>ANAC58          <---------ICU4  <---------MYB111(1)<---------ANAC58                       <-- -->GLK1(2)            <---------YAB1  --------->ANAC46  <-----------GT1                        -----   aagccattgatgctccattttcttcatcatttctttcatccaccaaatcgaagaaattgttactttcgctatcatcttcatcttcgttttcttcaattca  18875600                                      <---------ICU4                                      --------->ATHB12                                     <---------YAB1                                          <-------                                  <-------TEIL                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            <----------DOF2                   <---------GLK1(2)    <----------DOF2 ------->YAB1           <---------GLK1(2)            <---------ICU4  <---------ANAC58 <---------MYB46(3) -------ATHB12   <---------ARR14(2)  --------->ICU4 <---------YAB1   <---------ANAC58<---------TOE1(2) ---->WOX13(1)   --------->ARR14(2)--------->YAB1 --------->YAB1  <----------DOF2<---------YAB1     -   atcatctattgatacttcggttcttcgattctttgattcatcattgattctatcatcattcatcgattctttcgttcaacatcatctttggttcaaaatt  18875700                                                                  <---------ANAC58           <-------                                                                  <---------ANAC58           --------                                                              <---------DEAR3(2)             <-------                                                              <------MYB83                   --------                                                              <------MYB46(1)         <---------ALFIN1                                                              <---------MYB46(3)      --------->ZAT6                                                             <---------AtMYB61       <---------ZAT14              <------ZmHOX2a(2)                         *TSS --------->MYB111(1)     --------->ZAT14              ------------>CBF                        <---------ZAT2          ------>ZmHOX2a(2)            --------->At4g35610  <----------DOF2      --------->ZAT2         <------ZmHOX2a(2)       <---------ETT(2)       <---------MYB52(1)     <---------YAB1         <---------ARR11(3)      --------->DDF1 --------->YAB1               <------ZmHOX2a(2)         --------->ARR11(3) --ICU4--------->ETT(2)<---------YAB1      --------->ZAT2   <--------P      <---------ARR14(2) ----------->CBF    <---------YAB1         <---------ZAT2  <-------GAMYB    --------->ARR14(2)   acaacaatgtcgacagatcaatatgataattcgttctttcttcatagctcggatcatgctgggttggttcttgtatcagatcgtctcaacactggagctg  18875800                                                                               <---------ZAT14                                                                               --------->ZAT14                                                                        --------->ZAT2                                      ---------->DOF2                   --------->At4g35610    <---------YAB1                 ---------->DOF2                      <---------At4g35610 --At4g35610             <---------ANAC58                              --------->GLK1(2) ->At4g35610             <---------ANAC58                         --------->ZAT14                  <- --ZAT2                  <---------ANAC46     --------->GLK1(2)   <---------ZAT14                  -- ->ZAT2               --------->GLK1(1)  --------->At4g35610  <---------------AtSPL3         --------   aatttcattcttggcaactctctgatttcttggaagtcaaagaagcagaatgtggcaagtagtagtagtacagaagctgagtacagagccatggcagtgg  18875900                                      ------>ZmHOX2a(2)                                     --------->CCA1(2)                                     <------ZmHOX2a(2)                                    <---------ARR14(2)                                    --------->ARR14(2)                <-------GAMYB       <---------ARR11(3)               <------MYB83         --------->AGP1               <---------MYB46(3)   <-----------ARR10               <------MYB46(1)      <---------ARR14(3)                      ----------->HVH21              --------->MYB59       --------->ARR14(3)                    --------->ALFIN1  --------->At4g35610     <---------GLK1(2)                  --------->ANAC46        --------->GLK1(2) --------At4g35610       <---------At4g35610        --------->YAB1      <---------ANAC46 ------->At4g35610       --------->At4g35610  <-----------GT1--------->ANAC58        <---------ARR14(2) ->At4g35610  <---------AtMYB61     --------->ARR11(3)       --------->ANAC58        --------->ARR14(2)   catctgatgaaatggtttggttgaatcagcttcttcaagatctacatattacaatcacaactcaagccaagttgatgtgtgacaacaaatctgctatgca  18876000                           <------ZmHOX2a(1)                       ---------->DOF2                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->ANAC58    <------MYB83                     <---------YAB1               <-----------HVH21------>ZmHOX2a(2)                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  --------->ANAC58    <------MYB46(1)                   --------->YAB1        <---------ZAT6 --------->ANAC46---------->DOF2                <----------DOF2    <-------TEIL<---------GLK1(2) <---------ARR11(3)  <-----------GT1   tattgcaaataatccagtctttcatgaaaggaccaagtacatagagatagattgtcacaagacgcatgatcgtataaagctaggttttcacaaggttttt  18876100                           <---------ARR11(3)                           --------->ARR14(2)                           --------->ARR11(3)                           <---------ARR14(2)                          <---------GLK1(1)                          <----------TaMYB80                          --------->GLK1(1)                         <---------ARR14(2)                         ----------->ARR10                         --------->ARR14(2)                      <---------ANAC58                      <---------ANAC46                      <---------ANAC58                     <---------LBD16                    <----------DOF2                 <---------ZAT2                         ------>ZmHOX2a(1)                 --------->ZAT2                    <---------ZAT2                 --------->At4g35610             <---------ALFIN1    <---------ANAC58              --------->MYB46(3)                 <-----------RAV1(2) <---------AtLEC2               -             -------->P--------->LBD16         ------>NtERF2         <---------ANAC58               -          <---------MYB52(2)                  --------->RAP2.3(3)    <---------ANAC46               -         <---------At4g35610       XXXXXXXXXXXXXXXXXXXX>MIR162A/B   --------->ATHB12             ----         --------->At4g35610   ------>ZmHOX2a(1)<------NtERF2   --------->ATHB12      <-----------HVH21       --------->MYB46(3)---------->TaMYB80 ------>NtERF2       <---------ICU4------->TEIL       <---   catgtttcaacagctaaccagcttgcggatatcctgaagaaacctctgcccccaggtccttttcattcattgcttggacgaatgtcagtgtcaactctct  18876200                                                  <---------AHL20(2)                                                  --------->ARR11(3)                                                  <---------AHL20(1)                                               --------->YAB1                                               <---------AHL20(2)                                            --------->YAB1                                      ----------->GT1                                    <---------ANAC58  --------->ZAT14                   <---------ANAC46 -------->ANAC46                    ----------->GT1                                   <---------ANAC58 -------->ANAC58                    <---------ANAC58                                  <---------ANAC58 -------->ANAC58                   <---------DEAR3(1)      <---------REM1(1)         <---------At4g35610 ----->ZAT14                      --------->ALFIN1--------->AHL20(1)              <---------MYB52(1) ------ZAT14    <---------YAB1 <---------ANAC46--------->AHL20(2)                <----------DOF2 <---   tcactccacaagaaggttttgattctaagagttgaggggggtgtattaataatatatagagatgtagaattgatataagtctcctttagcttatgttatt  18876300  Previous    Next  AGI:  At3g50755.1    Description:  transposable element gene. copia-like retrotransposon family, has a 3.3e-35 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea) Range:  from: 18875756    to: 18876235    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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