Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             --------->GLK1(1)          <---------ARR11(3)          --------->ARR11(3)    ----------->RAV1(1)                                                       ----------->HVH21   <----------ID1                                                           --------->At4g35610 --------->ANAC58                                                <---------AHL20(2)            ------ --------->ANAC58                                               --------->AHL20(1)   ---------->DOF2 --------->ANAC46 --------->YAB1                                <---------AHL20(1)<---------MYB59 -------->DOF2   <---------ATHB12                               --------->AHL20(2)<-----------------AGL3 ------DOF2--------->CCA1(2)                          --------->YAB1      --------->YAB1    <-------- -->At4g35610  --------->WOX13(1)                   --------->GLK1(2)    <---------ATHB12   ---------   ttaaagcaacaagatatcaatcaaactgattcaaaactataaaacaagctcaagaatcaagaccaatataatcaaatcatatgacctaaaatcggaatct  18840200                                 ------->GAMYB                                --------->ANAC58                                --------->ANAC46                                --------->ANAC58                           <-----------GT1                        <---------ZAT6                    <---------YAB1                       --------->ANAC58 --->TOE2(3)      --------->At4g35610                    --------->ANAC58 -GLK1(2)      --------->At4g35610                   --------->ANAC58                  --------->ATHB12 >ARR14(2)     <---------At4g35610                   --------->ANAC58                 --------->AHL20(2)   caattcaatttagaactagctgatgagtgttacaacgcaatcgaaaatagaaccgaagcaagtatcaaacgacttaagagtattccaattcattagctag  18840300             ------->GAMYB            --------->ANAC46            --------->ANAC58            --------->ANAC58                                                   --------->At4g35610          --------->MYB52(1)          --------->ANAC58                         <---------At4g35610   ------>MYB46(1)                    --------->ANAC58                   --------->ZAT2   ------>MYB83                     --------->YAB1                       --------->At4g35610 <---------MYB59      --------->GLK1(2)                         --------->CCA1(2)                 --- --------->TOE2(3)    --------->ARR11(3)      <---------At4g35610    ------->TEIL                 <--   aaacctaatagacaacgaaactaaaatctagagagtaatcacgaattcagcgaatttagagagaagagacgaaccagcttaagctgaagaacattggctc  18840400                                                                                           <---------At4g35610                                                                                           --------->At4g35610                                                                                     ------>ZmHOX2a(2)                                                                                     ================                                         <---------ANAC55(2)                        =================                                         --------->ANAC46  <------NtERF2            --------->GLK1(1)                                         --------->ANAC58 --------->LBD16           <---------GLK1(1)                                         --------->ANAC58--------->DEAR3(1)         <------ZmHOX2a(2)                                         --------->ANAC55(2)<---------GLK1(2)      --------->ARR11(3)                              <---------ANAC58          <---------LBD16            <---------ARR11(3)                              <---------ANAC46        ------>ZmHOX2a(2)      ---------->DOF2                              <---------ANAC58       <---------GLK1(1)    <------NtERF2    <---------ZAT2                             <------NtERF2          <---------ARR14(2)   ----------->RAV1(1)                           <---------DEAR3(1)       --------->ARR14(2)   ------>NtERF2<---------HSFB2a(2)                          <---------At4g35610  ---------->DOF2          <----------ID1<---------LBD16       <----------DOF2    --------->At4g35610--------->ANAC58 --------->ATERF1(1)  --------->ARR14(2) ------>ZAT14    <---------ZAT2 <-------GAMYB--------->ANAC58<---------ATERF1(1)   <---------ARR14(2) -------ZAT14    --------->ZAT2<---------MYB46(3)  <------ZmHOX2a(1)    <---------ETT(2)   --------->ZAT2   tgttctgaactttagcgcgagcttgaacagcggcgtttggattacgcaagaaaggatcgccggagtctcccatggcgacaaaagggatctcggagctgtg  18840500                                                                                            <--------                                                                                           <---------YAB1                            --------->ARR14(2)                                             --------->ICU4                            <---------ARR11(3)                                          <---------YAB1                 <---------At4g35610                                                 --------->GLK1(2)              <------ZmHOX2a(1)                                                     <---------GLK1(2)        <---------ANAC46    --------->ARR11(3)                                      --------->ARR14(2)        <---------ANAC58    <---------ARR14(2)         --------->MYB52(1)           <---------ARR14(2)        <---------ANAC58   <------ZmHOX2a(1)         <---------MYB52(2)           --------->LBD16 ====================HOX2a_HOX2a              --------->ANAC58                  <---------LBD16    *TSS ====================HOX2a_HOX2a              --------->ANAC58               ----------->HVH21   <---   ctagggtttttcgtgaggaagcggatggaggatttttgcagagagaagaagcaaaactaacaaaacccaaattcaatctctaaccggattctgattatta  18840600                                  ---------->DOF2                                --------->TOE2(3)                               --------->ANAC55(2)                               --------->ANAC58                              <-------TEIL                            <---------ARR14(2)                          --------->ANAC58                          --------->ANAC58                          --------->ANAC46                          <---------YAB1                       <------ZmHOX2a(2)                      --------->ARR11(3)    <---------ANAC58                 <---------ALFIN1                     --------->At4g35610    <---------ANAC58                ------>MYB46(1)                 ----------->RAV1(1)        <---------ANAC46        <----------DOF2                 --------->MYB52(1)       ------>NtERF2          <---------ALFIN1              <------ZmHOX2a(2)----------->GT1         <---------ARR11(3)   ------>MYB83             --------->AGP1 --------->ARR14(2)         --------->ARR11(3)  <---------ALFIN1         -             --------->ARR11(3)--------->ANAC55(1)    <---------CCA1(2)   ------->GAMYB             < -ICU4       <---------ARR11(3)<---------ANAC55(2)  <---------CCA1(2)  <-----------GT1       <-------GAMYB ------TOE2(3)--------->CCA1(2)--------->ANAC58<---------ZAT2<-----------HVH21              ---------   agaaaaccgagttgagatccaacagatcacgatacgtaaaacgatgccgtgctcgtatatctcggtcacactttaacccactcgctgaacaagagggtta  18840700                                                     -------->ATHB1                                                     --------->ATHB51                                                     --------->ATHB12            <----------DOF2                          <---------ICU4             <----------DOF2           <---------DAG2                           <---------AHL20(2)         ------>ZmHOX2a(2) -------->At4g35610              <---------AHL20(2) --------->ICU4           <---------ARR11(3) ---------At4g35610              --------->AHL20(2) <---------ATHB51         --------->ARR11(3) -->GT1 <-----------GT1    <-----------GT1          --------->AHL20(2)  <---------MYB46(3) <---------CCA1(2)   tcagcttcaattacctttttttttggattttacaattttttgttaacatgtcaaattattggttttgtaggcattcgttgatctttggctcccatatttt  18840800                                                                                                 ----                                                                                                <----                                                                                              -------                                                                                              -------                                                                                              -------                                                                                             --------                                                                                             --------                                                                                             --------                           <---------YAB1            <-----------GT1                       <---------                          <---------AHL20(2)     <---------YAB1                        <---------TOE2(3)                          --------->AHL20(2)   --------->AHL20(2)                     ---------->DOF2                         <---------AHL20(2)    <---------AHL20(2)                   <---------AHL20(2)                         --------->AHL20(2)   <---------AHL20(2)                 <---------AHL20(1)                         --------->YAB1   --------->AHL20(2)                     --------->AHL20(1)                      <---------ICU4      --------->AHL20(1)                     --------->AHL20(2)                     --------->ICU4       <---------AHL20(1)                    <---------AHL20(2)  -                     <---------YAB1       <---------AHL20(2)                <---------AHL20(2)<------                   --------->YAB1        --------->AHL20(2)                 --------->AHL20(2)-------   tctaaaatccattaacaaaaaacataattaaaatagattccaattttatttatttttacaataacaggctctaaatttttaaatattttaaagtaaccat  18840900 ----->YAB1 -----YAB1 -->TOE1(3) -->TOE2(3) -->YAB1     <---------ICU4 --------->AGL3                                                                <---------ANAC55(2) --------->AGL1                                                      --------->YAB1 --------->AGL2                                                 --------->MYB46(3)                 <- --GT1    <-----------GT1                            --------->ALFIN1<--------ATHB1                <- -------->YAB1                                     <---------bZIP60(2)--------->ARR11(3)   --------->DEAR3(2) ---------AGL15                                    --------->ALFIN1 --------->ICU4 <---------YAB1<--- -------->AGL15--------->GLK1(1)                 <------ZmHOX2a(1)  <---------ATHB12     <---------ARR14(2)   aataagaaaaattaagcatttccaaatgaccatcactgattcacttccataggatgtggctctccatccaatgattttgttaagtatgatggaaccgagg  18841000                                                                              --------->TOE2(3)                                                                             --------->REM1(1)                                                                      <-------GAMYB                                                   --------->MYB52(1) <---------ANAC58                                                <---------At4g35610   <---------ANAC46                                              --------->ZAT18         <---------ANAC58     ------>ZmHOX2a(2)                        <---------ZAT18        <------MYB46(1)    <------ZmHOX2a(2)                      --------->TGA1a           --------->MYB55(2)   <---------ARR14(2)          <-----------GT1--------->SPL7         <------MYB83   --------->AGP1           <----------DOF2<---------ANAC46          <---------MYB46(3)   <---------ARR11(3)       =========================bZIP_DOF    <---------MYB46(3)   --------->ARR11(3)      <---------DAG2  <---------ANAC58      <-----------RAV1(1)   --------->ARR14(2)   <---------ALFIN1   <---------ANAC58   <-----------RAV1(1)---------->DOF2  --------->GLK1(1)     --------->ANAC58   <---------TGA1a   --------->ICU4----------->RAV1(1)  <---------GLK1(1)     --------->ANAC58   ===================================MYC_MYB -----MYB46(1)    <---------ANAC46         =================================================bZIP_DOF -----MYB83     --------->MYB52(1)--------->ATHB12----------->HVH21  --------->MYB52(2)<----------DOF2 -----P        ----------->HVH21 <---------YAB1 --------->At4g35610 <---------AtMYB61 <---------DAG2   ttggagatctattgaacttgacgggcacaccttttaccattggtctcgtgcgctaacagcgtaattgttgttggttgcaacatcaaagccttttgagaaa  18841100  Previous    Next  AGI:  At3g50670.1    Description:  U1-70K (SPLICEOSOMAL PROTEIN U1A); RNA binding. Identical to U1 small nuclear ribonucleoprotein 70 kDa (RNU1) [Arabidopsis Thaliana] (GB:Q42404;GB:Q42378); similar to U1 small nuclear ribonucleoprotein 70 kDa, putative [Arabidopsis thaliana] (TAIR:AT2G43370.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22864.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 18837281    to: 18840599    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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