Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                        --------->GLK1(2)                                      <---------ARR14(2)                                      --------->ARR14(2)                                     <---------GLK1(2)                                     <---------ARR14(2)     ------->MYC3             <---------ANAC58       <---------ARR14(2)     <-------MYC3             <---------ANAC58       --------->ARR14(2)    --------->O2            <---------ARR11(3)       <---------KAN4(2)    <---------O2            --------->ARR11(3)   --------->HSFB2a(2)  ----------->RAV1(1)       --------->ARR14(2)   --------->LBD16  <---------ALFIN1          <---------ARR11(1)  --------->HSFB2a(2) ----->NtERF2<---------YAB1 <---------ARR14(2)  <---------LBD16 ------->ANAC58            <---------GLK1(1)    <---------ANAC46 ------->ANAC46            --------->GLK1(1)    <---------HSFB2a(2) ------->RAP2.6(2)     --------->ANAC58        <---------LBD16 ------->ANAC58        --------->ANAC58      --------->ARR14(2)   ----------->GT1 -->AtSPL3 --------->ATHB12<---------CCA1(2) <---------ARR14(2)   <---------ZAT6   gacgccacatggattattagactaaacgcatatcttgcagaatctgggttccgggaatactccgaatagagttacaatgtttctctgaggcattttgtcg  18724300                                                                                    <------NtERF2                                                                                    --------->ATERF1(1)                                                                                 <------NtERF2                                                                                 --------->ATERF1(1)                                                                                 --------->RAP2.3(1)                                                                                <---------RAP2.3(1)                                                                                <---------ATERF1(1)                                                                               --------->DEAR3(1)                                                                               <---------DEAR3(1)                                                                              <------NtERF2                                                                              --------->At4g35610                                                                         --------->ANAC46                                  --------->ANAC58                  --------->ARR14(2)                                  --------->ANAC58              --------->SPL7<---------At4g35610                     <---------ZAT18 <-------TEIL             <---------SPL7<---------DEAR3(1)                     --------->ZAT14 ------->TEIL            <---------ANAC58 <---------ZAT2          <---------ANAC58        --------->ANAC55(2)        <---------ANAC58 --------->ATERF1(1)          <---------ANAC58        <---------ANAC55(2)       <---------------AtSPL3 ------>NtERF2       --------->LBD16        --------->AtMYB61             <---------------AtSPL8<---------ANAC46      --------->ANAC55(2)    --------->bZIP60(2)            --------------->AtSPL3--------->DEAR3(1)      <---------ANAC46       --------->ANAC46           --------->MYB52(2) <------NtERF2      <---------ANAC58     --------->REM1(1)          <---------YAB1<---------ARR14(2)         <-----      <---------ANAC58     <---------ALFIN1         ----------->GT1 <---------GLK1(2)      --------->ALFIN1  <----------DOF2  <---------At4g35610      --------->CCA1(2)<---------ANAC46<---------ATERF1(1)  <--   aacactttccgtgcttgttccagcgaactacacctcacgtacatcgatatgagattgttatttgcgtacggatactcggcagcggcgtctacggtgagga  18724400                  <------NtERF2            ---------->DOF2           ----------->HVH21          <---------MYB52(2)                                                               <---------GLK1(2)         <---------At4g35610                                                      <------NtERF2         --------->At4g35610                                                     ------>NtERF2         <XXXXXXXXXXXXXXXXXXXXMIR852                                             --------->RAP2.6(2)     --------->ALFIN1                                                           <---------RAP2.6(2)   <---------ANAC46                           ------->GAMYB                     --------->ATERF1(2)   <---------ANAC58                        --------->MYB52(1)     <---------ZAT2<---------DEAR3(1)   <---------ANAC58               --------->DAG2                  <---------At4g35610   <-----------GT1 -ZmHOX2a(1)--------->MYB52(1)   ---------->DOF2     <---------HSFC1(2)         <---------ATERF1(2) ----ZmHOX2a(1)  ------>NtERF2----------------->AGL1 --------->HSFC1(2)        --------->RAP2.6(3)   ggagagcgtggagctaacgcgcctgttttagtgccaaaagttgtacaacggaagaagctacttcgttcagcttgttcgcagggcggcaattcacattctc  18724500                        <---------ANAC58          <---------HSFC1(2)          --------->HSFC1(2)          <---------HSFB2a(1)                                      <---------TOE2(3)          --------->HSFB2a(1)                        <---------ANAC46           ----------->RAV1(2)         ----------->ARR10                        --------->ANAC46 <---------TOE1(3)                -   --------->DAG2       <---------ANAC58   <----------DOF2        ---------->DOF2           ---------  ---------->DOF2      <-------TEIL       <---------DAG2       <----------DOF2<-----------GT1      --   tctataaagcgaagtttcgaaacgatgcgtttcatttgaactcaccttttaaacgccgtgtttgactttaaagtttaatctaacctgtctctacaaacaa  18724600                                                                              *TSS                                                                            --------->ZAT18                                                                            --------->ZAT14                                                                    <------NtERF2                                                                   ------>NtERF2    <---------ANAC46                                               --------->LBD16    <---------ANAC58                             --------->YAB1   --------->ANAC46       ----------->GT1    <---------ANAC58                          --------->YAB1      --------->LBD16      <-------GAMYB   ------>NtERF2                   --------->ANAC46               <---------DEAR3(1) <------NtERF2 -------->At4g35610                --------->ANAC58              <---------LBD16   <---------ETT(2) >ANAC46              <-----------TGA1      --------->AHL20(2) ------>ZmHOX2a(2)<-----------RAV1(1) ------->ANAC46------->TEIL        --------->ANAC58      <------------CBF   <---------ZAT14   tacgctgcgtttcatcgaacctctcgtcataacaaaaacgctacgttttaataagagtttattgatccccggcgagagtgaactgtcgtcgttgtaaaat  18724700              <---------ANAC58      --------->ARR14(2)    --------->LBD16    --------->ANAC46                     <----------DOF2   <---------HSFB2a(2)                  ------>ZmHOX2a(2)                     --------->At4g35610   --------->HSFB2a(2)                <---------ARR11(3)               <---------YAB1  <---------LBD16                     --------->ARR11(3)            <---------YAB1                  < --------->MYB52(1)        <---------CCA1(2)                     --------->ICU4             <-------- -------->P   <---------ANAC58      ------>ZmHOX2a(2)     <---------ANAC46    <---------At4g35610<---   ggctaccggaaacttggcttctcgtcttcatctcttgatcgatctttgtgttcgccaattccctgtaagtattattcttcagctcttgttctccgtttcg  18724800                                                                                            ---------                                                                                            ---------                                                                                  <------NtERF2                                                                                 ------>NtERF2      -                                            <---------HSFB2a(2)                 --------->DEAR3(1) --                                            --------->HSFB2a(2)                ----------------->AGL1        --------->YAB1                      <---------LBD16          ----------->GT1        --------- ---------YAB1                  --------->ANAC58           ---------->DOF2     --------->DEAR3(2)---- -MYB52(1) <-----------GT1      --------->ANAC46          <------ZmHOX2a(1)<----------DOF2--------->MYB52(1) ------MYB52(1)                 --------->ANAC58     <---------REM1(1)  <-----------GT1  <---------ARR14(2)   ttatgagttattgtaactatgtgtaattgtataaacgcaattggttctcggagtcatgtaggaaagagaagaagtaactttgccgacgaaggaaacggaa  18724900   ------>ZmHOX2a(2)  <------ZmHOX2a(2)                                                                 <----------------  --------->ARR14(1)                                                               ------>ZmHOX2a(1)  --------->CCA1(2)                                                           --------->LBD16 --------->ARR11(3)                                                         <---------LBD16 --------->AGP1                                                           <---------ARR14(2) <---------AGP1                                                           --------->ARR14(2) <---------ARR14(2)                                                      --------->HSFC1(2) --------->ARR14(2)                                                      <---------HSFC1(2) <---------ARR14(3)                                                      <---------HSFB2a(1) --------->ARR14(3)           <---------ICU4                             --------->HSFB2a(1) <---------ARR11(3)           --------->ATHB12                           --------->ZAT2 -->GT1                      --------->ICU4                              <---------At4g35610 >ANAC58                     <---------YAB1              <---------ANAC46--------->At4g35610 -------->RVE1(1)     <---------TOE1(2)                ------>ZmHOX2a(1) <---------ZAT2 --------->ARR10      <---------TOE2(2)           <---------ANAC58  ------>ZmHOX2a(1) >ANAC58  <----------DOF2 <-------TEIL            <---------ANAC58  <---------HSFB2a(2) ------>DOF2         <-----------RAV1(2)    <---------AHL20(2)      --------->HSFB2a(2)<---------AHL20(2)   aaagatctgcttctttctctatctcaggttcatcattgtcgatgatttttttgcttcctgtgtgttaatcctcgaagctccggtcctcttaaattggata  18725000                                                                     <---------MYB46(3)                                                                    <---------DEAR3(1)                                                                    --------->ALFIN1                                                                    <---------AtMYB61                                                                   <---------ABI4(1)                                                                   <------NtERF2                   <-                                                                   <-------GAMYB          <---------GLK1(1)                                                                  <---------DEAR4(2)      --------->GLK1(1)                                                                 --------->ALFIN1 <---------ANAC58 <-                                                                 <---------DREB2C(2)   <---------TOE2(3)                                                                 <---------DEAR3(1)<----------DOF2 --                 --------->ALFIN1                             --------->DAG2      <---------ANAC58 --             <-----------RAV1(2)                       --------->ANAC55(2)   --------->ATHB12  ------ -AGL3     <-----------GT1                <------ZmHOX2a(1)  ---------->DOF2<-------TEIL <---------ICU4   gttttttttttttttacaggtgttgagagaaattcaatcttggaggagcgaaatttcatgtgataaggcggtggtgagttcattgctttaagaattccta  18725100                     <--------P                     <---------WOX13(1)                   <---------MYB46(3)                   --------->MYB55(2)                                                               <       >>>>>>>>>ARR2<-------GAMYB                                                                   -       >>>>>>>>>ARR1<---------ANAC58                                                                -     <---------TOE2(3)                                            --------->ARR14(2)           <-----     <---------TOE1(3)<---------MYB46(3)              <---------GLK1(2)                       -------     <---------YAB1--------->MYB52(2)                 <---------ARR11(3)                    ---------  <---------AHL20(2)<---------ANAC58                  --------->ARR11(3)                    <-------- --------AHL20(2)  <------MYB46(1)                  <---------TOE2(3)                <---------MYB46(3) --------AHL20(1)  <------MYB83                     ----------->ARR10              <-------GAMYB <--- ------->AHL20(1) <---------AtMYB61             --------->At4g35610        xxxxxxxxxxxxxxxxxx>smallRNA(se3) ------->AHL20(2) --------->MYB111(1)      --------->ATHB12      <------ZmHOX2a(1)<-----------RAV1(1) >ZmHOX2a(1)     <--------P               <---------AHL20(2)   --------->YAB1<------ZmHOX2a(1)<------   atattttaagattgtataggttggttgatgagtattggagctatttgattagctaagattttcaataggaatcgcgagaggagactgttgttgatcatga  18725200  Previous    Next  AGI:  At3g50420.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G13650.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67254.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 18721852    to: 18724630    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g50430.1    Description:  similar to Os07g0120700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058781.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO17953.1) Range:  from: 18724678    to: 18728390    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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