Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <-------GAMYB                                                                                     ----------->GT1                                                                                     <---------MYB46(3)              <-----------GT1                            <---------YAB1             <---------YAB1          <---------AHL20(2)                   <----------DOF2                    --------->YAB1         --------->AHL20(2)                    <---------DAG2                    <---------YAB1    <-        <---------MYB52(1)                    <---------ANAC58                   --------->ICU4<----- ------->At4g35610                            <---------ANAC58             <---------TOE2(3)   ------   aagctcagccattaattttcgctattcattctgtttttagttgttcttgctttattgttatgcttcttccagcctctaatgttatgatggttaaaaatta  18712700                                      --------->TOE2(3)                                    <---------TOE1(3)  <-----------GT1                   ------->TEIL                                                  ---  --------->YAB1             <---------GLK1(2)                  <---------AHL20(2)           <------- --------ICU4                <---------ARR14(2)             --------->CCA1(2)               <-------- ----AHL20(2)                --------->ARR11(3)            <---------ARR11(3)           <----------DOF2 --->AHL20(2)             --------->YAB1                   --------->ARR11(3)   <-----------GT1 <----   aaaatcacaatacatgtttattctactatcagattttgaacgttatatatgtataagagtagatataaaaattgttgttttttttccttcctttttaact  18712800                                                              ---------->DOF2                                                            ------->GAMYB                                                           --------->ANAC58                      ---------->DOF2                      --------->ANAC58      <---------AHL20(2)                                 --------->MYB52(1)           <---------ANAC58     --------->AHL20(2)                                --------->MYB46(3)             <---------ANAC58 ------>AHL20(2)------->GAMYB                         --------->ANAC46              <---------AHL20(2) ----GT1       --------->ANAC58                       --------->ANAC58              <-----------GT1 ---GT1        <---------MYB52(2)                     --------->ANAC58         <---------AHL20(2) ------DOF2    --------->ANAC58                      --------->WOX13(1)       --------->AHL20(2)   <-   tttaatataaaatggcaacgaaacaaaagaagaaaatgtatgaagtatgaactatcaagcaacggaaagatggttttcgttttaatttacttacgagttt  18712900              --------->AHL20(2)              <---------AHL20(2)             --------->AHL20(2)          --------->AHL20(2)          <---------AHL20(2)                                                           ----------->GT1         <---------AHL20(2)                                                          ---------->DOF2         <---------AHL20(1)                                                   <---------YAB1---------         --------->AHL20(2)       --------------->AtSPL8    ------------>CBF  ----------->TBP<-------      <---------AHL20(1)    --------->YAB1                <---------ARR14(2)<---------------AGL15      --------->AHL20(1)    <---------ICU4           <-----------GT1        --------------->AGL15      --------->AHL20(2) ------>MYB83                --------->MYB52(1)    <-----------------AGL2      <---------AHL20(2) ------>MYB46(1)      ----------->GT1              ----------------->AGL3     --------->AHL20(2)--------->TOE2(3)      <---------MYB59              <-----------------AGL3 -----ZmHOX2a(1)       <---------MYB59  <---------------AtSPL3             ----------------->AGL2   aggaccattaaattatttaatcaaacctaataataagttgtacttgtaccgaaataaacggttccaatttcgaataaactataaatggaaagtaaaaatt  18713000                                                                                 ------->GAMYB                                                       *TSS                      --------->AtMYB61                                                    <---------MYB59             --------->MYB46(3)                                                    --------->TOE2(3)          ------>MYB46(1)                                                 --------->ARR14(2)            -------->P                                <----------DOF2--------->LBD16                 ------>MYB83                               --------->TOE2(3)<---------MYB52(1)     <---------YAB1                             ------>MYB83     --------->ANAC46       --------->YAB1                -- --------->AHL20(2)          ------>MYB46(1)  --------->ANAC55(2)   --------->ICU4                <-- >ICU4                       -------->P<<<<<<<<<TBF1--------->TOE1(3)--------->AHL20(2)       ------- --ICU4        --------->ANAC46<---------DAG2<---------LBD16        <---------YAB1           --------   ccataaattccatatagacaccatcgtctccaacctttttcttcttctccgtaacctaaaactctgtctaattataaatccaaccaaaacaaaaaaaaag  18713100                                                 <---------ANAC55(2)                                                 <---------ANAC46                                                 ----------->GT1                                                 --------->ANAC55(2)                                                 --------->ANAC58                                         --------->ANAC46                                           <                                         --------->ANAC58                                          --                                         --------->ANAC58                   --------->MYB52(1)     --  --------->YAB1                      <-------TEIL            <---------ATHB12                     <- ------->WOX13(1)                    --------->CCA1(2)       --------->ANAC58   ---------->DOF2    <- -----TEIL                        --------->DAG2 --------->ANAC58         <---------MYB52(2)       -- -->DAG2                          <---------------AtSPL8     --------->ANAC58<---------TOE2(3)  ----- -->DOF2                        ---------->DOF2 <-----------------------TaNAC69(2)              <----   tccatcatcttcttcttatgtcttcaatgcataagaaaggtacaagcagagacgtaaatagccaagcatttacaaaactaacgaaagtagaaactattcc  18713200                               --------->ARR11(3)                               <---------ARR11(3)                              <---------GLK1(1)            --------->ANAC46  --------->CCA1(1)          <-----------GT1     --------->GLK1(1) ------ZmHOX2a(2)             --------->RVE1(1)                                                     - ------->ARR14(2)            <---------ARR11(3)     ------>ZmHOX2a(1)                               - ------->AGP1                --------->ARR11(3)    <---------ALFIN1                                -- --------ARR14(2)       <---------ANAC46      --------->HSFC1(2)                                  --- --------ARR11(3)      ------>MYB83           --------->HSFB2a(1)                                 --- ------->ARR11(3)      ------>MYB46(1)        <---------HSFC1(2)                             <------ZmHOX2a(2) ---->HSFB2a(2)      --------->TOE1(2)        <---------HSFB2a(1)                           <-------- -----HSFB2a(2)      --------->TOE2(2)        <---------ATERF1(1)                <---------DEAR3(2)--   agatccagacatttacgacataacctacgtagatatctctccctccgaaggctcctcttcaccattatccaaatcaccatggtccgttcaagtcgatcca  18713300                                                                  <---------ALFIN1                                                                  --------->AtMYB61                                                                 --------->MYB46(3)                                                                 <---------ATHB12                                                                 <---------MYB55(2)       --------->ARR14(2)                                     --------->AtMYB61       <---------GLK1(2)                                      --------->MYB46(3)       <---------ARR14(2)                                     ------->GAMYB     ----------->ARR10                                        <---------MYB111(1)   --------->LBD16                                           <---------MYB55(2)  --------->DEAR3(1)                            ---------->DOF2 -------->P  <---------ANAC46                       --------->CCA1(2)   <---------MYB52(2) -------->LBD16          ----------->HVH21     ------->GAMYB --------->MYB46(3) ----->NtERF2          <---------ANAC46 --------->ARR14(2)  --------->ANAC58 ------->ANAC46  <---------YAB1         <---------ARR14(2)  --------->ANAC58                        < ------>MYB46(3)<---------ARR11(1)   <---------ANAC46       -------->P    ------>ZmHOX2a(1)         - ------>SPL7   <---------CCA1(2)     <---------------------WRI1 ------>MYB46(1)              -------- -ARR14(2)    --------->LBD16       <---------LBD16        --------->WOX13(1)                <------- ----->GAMYB<---------LBD16---------->DOF2    --------->MYB46(3)------>MYB83             <-----------HVH21   tccgccgtagattctccgtatcattcggtgaaagttacgacggatacaaccaaagaaaaatcaaccaaccactctcctaatattctcttggggtcacttg  18713400                                                        <------ZmHOX2a(2)                                                       <-----------ARR10                                                       --------->ARR11(3)                                                       --------->GLK1(2)                                                       <---------ARR11(3)                                                       --------->ARR14(2)                                                       <---------AGP1                                                       <---------ARR14(2)                                                <---------ZAT14                                    ============================HOX2a_HOX2a              <---------ARR11(1)    ===========================HOX2a_HOX2a         <-----------HVH21          <------ZmHOX2a(1) <------ZmHOX2a(1)        ----------->GT1      <-------TEIL   --------->ZAT6 ---------HSFB2a(2)       --------->At4g35610   --------->ZAT14 -------->HSFB2a(2)  --------->ATHB12     <-----------GT1------>ZmHOX2a(2)       ----------->GT1 ->ANAC55(2)  <-----------ARR10  <-----------RAV1(2)  <---------GLK1(2)    <---------TOE1(3) --ANAC55(2) <---------CCA1(2)--------->REM1(1) <---------REM1(2)          <---------TOE2(3)   ttcgcgaagaaggtcatatctattcattagctacatcaggagatttactctacacaggatctgattccaagaacattagggtttggaaaaaccatgttga  18713500                                                                                            <--------                                                                                            ---------                                                                                         --------->LBD16                                                                                        <---------ANAC58                                                                                        <---------ANAC55(1)                                                                                        <---------ANAC55(2)                                                                                        <---------ANAC46                                                                                        <---------ANAC58                                                                                       <-------TEIL                                                                                       ------>ZmHOX2a(2)                                                                                      <------ZmHOX2a(2)                                                                                      --------->CCA1(2)                               ---------->DOF2               <----------DOF2         --------->AGP1 -                           ----------->GT1                  <---------ICU4           <---------ARR14(2)                           <---------MYB46(3)             <---------ARR11(3)         --------->ARR14(2)                           <------MYB83                   --------->ARR11(3)         --------->ARR11(3)                           <------MYB46(1)             --------->AHL20(2)          ----------->ARR10< <---------HSFB2a(2)     <---------WOX13(1)    <---------ANAC58     <-----------HVH21<---------ARR11(3) --------->HSFB2a(2)    <---------ARR14(2)     <---------ANAC58<-----------GT1 ----------->GT1   ----   gttctcgagttttaaatcgaatagtggattggttaaagccattgttcttgctggagataaaatctttaccggtcatcaagatggtaagatccgtgtgtgg  18713600  Previous    Next  AGI:  At3g50390.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G26490.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66843.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40666.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 18713055    to: 18714600    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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