Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------->At4g35610                                                                                  <------ZmHOX2a(2)                                                                                 <---------ARR11(3)                                                                           <---------ANAC46                                                                         <---------MYB46(3)                                                                         --------->MYB55(2)                                                                        <---------AtMYB61                    <---------YAB1                                  ------->MYC3 --------->ARR11(3)             --------------------->WRI1 <---------ANAC58            <-------MYC3<---------GLK1(1)           <---------HSFB2a(1)          <---------ANAC58     <-----------HVH21  --------->GLK1(1)           <---------HSFC1(2)       <---------ANAC58       ------>ZmHOX2a(2)<---------MYB46(3) ------ICU4--------->HSFC1(2)       <---------ANAC58     <---------ARR11(3)--------->ALFIN1 ->ICU4  <---------ARR11(3)      <----------DOF2     --------->ANAC55(2)--------->ALFIN1      >>>>>>>   tagttcttcaagatgcttcgttcttatcgttcttcctttcttgcttcttctcttcacatgatcgttcacacatggtggtgggagatcatcagaaaaatcc  18696100                                                                                                 <---                                                                                                ----- <---------ANAC58                                                                             <------ <---------ANAC46                                                                      <---------YAB1 <---------ANAC58     ------->GAMYB------->TEIL                                   <------------CBF >>>>>>>>>>LFY     --------->MYB52(1)                                           --------->ARR11(3)   attgtgtgtttgagagaaaaacaacgcagagaaaacgtacttaagaaactagggctagaagaaactcgagagaaaacagagggatattgatgaataatgt  18696200                                                                                                   <-                                                                                                   <-                                                                                               ------                                                                                              -------                                        --------------->AGL15                                 <------                                   <---------HSFC1(2)                                       <--------                                 <---------ARR11(3)                                        --------->ICU4                                 --------->ARR11(3)                                     <---------YAB1                      <-----------TBP   <---------------AGL15                     <---------YAB1 <--- ------MYB46(3)      <---------AHL20(2)----------------->AGL3          ---------->DOF2--------->YAB1< ---->ALFIN1        --------->YAB1 --------->HSFC1(2)   <------------CBF  ----------->GT1  <---------YAB1 -----RAV1(1)       --------->AHL20(2) ----------------->AG     <---------LBD16 <-----------GT1<-----   gggtgatgagactactcgtctattatatatagagagatgtttccaaattttgagatgggattgtatttcggaaaaaaggaaattacaattttgattatta  18696300                        <---------MYB46(3)                        <---------DEAR3(2) --------AHL20(2)      <---------DEAR3(1) --------AHL20(1)      <---------TOE2(2)            <-----------GT1  <---------ICU4 --->YAB1          ------->TEIL                  <---------AHL20(2)  <---------AHL20(2) -->ICU4     <---------AHL20(2)                 --------->AHL20(1)  --------->AHL20(2) ---YAB1    <---------AHL20(2)                  <---------AHL20(1)--------->YAB1 -ICU4      --------->AHL20(2)           ----------->RAV1(1)     <---------YAB1 ------YAB1 --------->AHL20(1)           <---------ALFIN1      --------->YAB1         <-----------HVH21 ---------YAB1     <-------TEIL       ------>ZmHOX2a(2) <---------DAG2    --------->ANAC55(2) ----ICU4   <---------AHL20(1)       <------ZmHOX2a(2)  <----------DOF2   <---------ANAC55(2)   ttatttttgatcaatataatgtacgtcggtttatttgagatcgccacatatatatttcctttttcttataataaatacttgataaatctgtcaagagatt  18696400                                                                             --------->ANAC58                                                                             --------->ANAC58                                                                --------->ATHB12        ------->TEIL                                 *TSS     ------>ZmHOX2a(1)       <---------CCA1(2)                            --------->REM1(1)      <---------ALFIN1       <---------GLK1(2)                        --------->HSFC1(2)       --------->AtMYB61 <---------ALFIN1     >>>>>>>>>TBF1             <---------HSFC1(2)       <---------ALFIN1   acaacacttgaatctcgatgagaagaagaaggggaagaagacggagaagaagcttcacctagtccttgatttggaccacacgcttatccattcgactctt  18696500              ---------->DOF2           --------->HSFB2a(2)           <---------HSFB2a(2) <---------HSFB2a(2) <---------ANAC46              --------->HSFB2a(2) <---------ANAC58        <-----------ARR10                                                      ----- <---------ANAC58        <---------ARR14(2)                                                   <------ ----------->GT1         --------->ARR11(3)                             ---------->DOF2--------->YAB1 <---------ANAC55(2)     --------->ARR14(2)                        <-------TEIL       <---------ATHB12   gtttcgtaaatttctaaaaaggagaagtatctactcgaacaagtcgattcaaggctagatttatggagattcaacaaaggccattccaatgagtatatca  18696600                                         ------->GAMYB                                        --------->MYB46(3)                                      --------->MYB52(1)                                    --------->ATERF1(1)                                          ----                                    --------->DEAR3(2)                                          -----                                 <------ZmHOX2a(1)              <<<<<<<<<<<<<<<<<LFY --------->ANAC58          <----------DOF2  --------------->AGL15         ------->TEIL    <-------GAMYB    --------->DEAR3(1) ---->TOE2(3)         ------->TEIL  --------->MYB46(3)  <---------AtLEC2----------->GT1  --------->DEAR3(2) ---YAB1 <---------DAG2    <---------------AGL15 <-----------GT1--------->ANAC46     --------->ANAC58   ttaaacttcgaccttttcttcatgaatttctattaggagccaacgagcatttcactatgcatgtttacacaatggggttattcacttacgcacagaccgt  18696700                                                                            <---------TGA1a                                                                            --------->TGA1a                                                    ==================================bZIP_DOF    ---                                          --------->YAB1                    =========================             ------>ZmHOX2a(2)      <------ZmHOX2a(2)          ------>ZmHOX2a(1)            <--------        <---------WOX13(1)          ==================================HOX2a_HOX2a      <-----------RAV1(1)      --------->ATHB12             <---------ARR14(2)   ==============================bZIP_DOF    --- ----->REM1(2) --------->LBD16     --------->ARR11(3)   ---------->DOF2     --------->O2   <---------At4g35610 ---->ALFIN1 <---------LBD16<----------DOF2         ---------->DOF2         <---------O2 <---------RAP2.6(2)   gttgaagttgattgatccggacaaagtttactttggagatcgagtcataaccagtaaagaaagtcctagtaagaagacacttgagcttgttgtggctgat  18696800          <---------YAB1          --------->ICU4                                           <------ZmHOX2a(2)        <---------ANAC46                                          <---------ARR14(2)        <---------ANAC58                                          --------->ARR14(2) ---------->DOF2                         <------NtERF2            <---------ARR11(3) ------>ANAC58                        ---------->ID1              --------->ARR11(3) ===========bZIP_DOF             --------->ATHB12                <---------At4g35610 -ANAC46<---------ANAC58        <---------YAB1                   --------->At4g35610 ------>ANAC58                  --------->ICU4            <-----------RAV1(1)<---------YAB1   aagcaaagtgtcgtaattgtggatgatactagtgatgtttggcctcatgacaagagcaacttgttgcagatcaccaagtatgagtagtttttcagagatg  18696900                                                                         <---------HSFC1(2)                                                                         --------->HSFC1(2)                                                                         <---------KAN4(1)                                                                         <---------HSFB2a(1)                                                                         --------->HSFB2a(1)                                                                         --------->KAN4(1)                                                                        <---------KAN4(2)                                                              <------ZmHOX2a(2)                                                              ===================================HOX2a_HOX2a                                                              <---------YAB1                    -----                                                        --------->MYB52(1)                     ------                   --------->ARR11(3)                --------->ANAC46   <-----------ARR10      <-----                   <---------ARR11(3)   <---------SPL7 <---------WRKY38(1)--------->KAN4(2)    <-----          ---------->DOF2      ---------->DOF2  --------->ZAT18--------->ATHB12           ------>ZmHOX2a(1)   gtgatgacaatacaaagtcgaaatcttacgcagaaaagaagacggacgagtgtccagacaacggatcattggcgaatgttctcaaatttctcctacagat  18697000  Previous    Next  AGI:  At3g50373.1    Description:  similar to DNA binding / protein binding / transcription regulator [Arabidopsis thaliana] (TAIR:AT5G51360.1) Range:  from: 18695640    to: 18696102    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g50376.1    Description:  pseudogene of NLI interacting factor (NIF) family protein Range:  from: 18696453    to: 18697052    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version