Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                   <---------ATHB12                                                                                --------->ANAC58                                                                                --------->ANAC58                                                                                --------->ANAC46   <-                                                                               ------>MYB83 <------MYB46(1)                    <---------ZAT2                                             ------>MYB46(1)-------                    --------->ZAT2                                            <---------ALFIN1-------                    <---------STY1(2)                   <---------ANAC58 <------ZmHOX2a(2)  <------MYB83                    --------->STY1(2)                   <---------ANAC58<---------ARR11(3) <---------MYB46(3)                  <---------ALFIN1                <---------ANAC58      --------->ARR11(3) <---------AtMYB61                  <-----------RAV1(2)             <---------ANAC58     <---------At4g35610 --------->MYB59           <---------ANAC58                   <---------ANAC58  <---------AHL20(2)       <---------MYB52(1)          --------->ZAT2 <---------AGP1     <---------YAB1  ---------->ID1   <---------MYB55(2)   --- ------DOF2<---------ANAC58  <-----------HVH21<---------ANAC58<----------DOF2--------->MYB46(3)   <--   ttgtatatacagagcttgccccagctagttctgtcatcgtttctgtatgcttgctcgagcttgtcttttattgagatcacccactcaagtcgtttggtcc  18617700                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                   --                         --------->LBD16             <---------HSFB2a(2)                          ---          --------->AtMYB61                   <---------ANAC46                               -------- --------ALFIN1          <---------TOE1(2)    <---------ANAC58                               <------- -->PCF5  <---------ALFIN1                <---------ANAC46                            ----------->GT1 -->PCF2 --------->MYB46(3)               <---------ANAC58               <---------At4g35610 -------- ------>At4g35610       <-----------RAV1(2)   <---------ANAC58           --------->At4g35610 -------- -------At4g35610   --------->KAN4(2)     <---------ANAC58    <---------AtMYB61  <----------DOF2  ---   cgctcccttcgaccacctcgtttattccaggtttagaacgagtgtcttgctggttctccaagttttggtcttcatagctgatacttttgggtaaaacgac  18617800       <---------HSFC1(2)     <---------GLK1(2)     --------->ARR14(2)     <---------ARR14(2) <-------TEIL ------MYC2 ----->MYC2 ------MYC3                                                       <----------DOF2 ----->MYC3                                                    <-----------GT1 ------>ANAC58                                                <-----------GT1                   <---- ->ANAC58            <---------LBD16                       <---------ARR11(3)           --------->ANAC58 ---ID1<---------HSFB2a(1)                           --------->YAB1       <---------bZIP60(1)   ----- ->ANAC46    <---------MYB52(1)       <---------GLK1(2)    --------->ARR11(3)           --------->ANAC58 ->ANAC58 ---------->ID1              <---------ARR14(2)   <---------GLK1(2) <---------ICU4  -------- ------>ANAC58     --------->ETT(2)   --------->ARR14(2) ----------->ARR10--------->bZIP60(1)--------   acgttcggattcttcgttttgtctacggacattttcgacgtattctctcaacttgtcataagattttccttttttgacatcatgtccagtaagccaagga  18617900                                                                                      <------ZmHOX2a(1)                                                                                     <------MYB83                                                                                   <--------P                                                   <---------ANAC58              --------->MYB55(2)                                                   <---------ANAC58              <---------MYB46(3)                                                   --------->YAB1               <---------AtMYB61                                                   --------->ANAC55(2)        <---------MYB46(3)     --------->ALFIN1                           <----------DOF2              <---------DEAR3(1)    ------->PIF5                               <---------ANAC58              --------->ALFIN1    <-------PIF5          <---------TOE2(3)    <---------ANAC58              <---------AtMYB61    --------->LBD16       <---------TOE1(3)<-------GAMYB                  --------->ALFIN1 -----GLK1(2)            <-----------RAV1(2)<---------MYB52(1)          <---------ANAC46 ---->ARR14(2)           =============================RAV--------->YAB1 <---------ANAC58 ->ANAC58            <---------MYB46(3)   <---------MYB46(3)            <---------ANAC58 ->ANAC58           <---------ATHB12      <-----------RAV1(1)     <---------MYB46(3) <------MYB46(1)   atcgcccgtggtcgtaatggcaatggttcaggtagtactagtggctgttgctttcgtaatcgtagtagttgttgtcgtggtggtggtaggagtcgtagtc  18618000                                           --------->ALFIN1                                           <---------AtMYB61                                         <---------MYB46(3)                                        --------->ALFIN1                                     <---------DEAR3(1)                                     <---------AtMYB61             --------->ALFIN1                                    xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                  <---------DEAR3(1)             <---------MYB46(3)                                  <---------AtMYB61          <-----------RAV1(1)                               <---------DEAR3(1)            --------->ALFIN1                               --------->ALFIN1         <---------MYB46(3)                               <---------AtMYB61    --------->ALFIN1<---------MYB46(3)                            --------->ALFIN1<---------MYB46(3)  <---------DEAR3(1)                      --------->ALFIN1  <---------DEAR3(1) <---------MYB46(3)                      <---------ANAC46  <---------AtMYB61<-------GAMYB                    <---------MYB46(3)<---------MYB46(3)--------->MYB55(2)                   <---------DEAR3(1)--------->ALFIN1  <---------AtMYB61                   --------->ALFIN1<---------MYB46(3)<---------MYB46(3)                   <---------AtMYB61xxxxxxxxxxxxxxxxx>smallRNA(se3)<---------AtMYB61                <                --------->ALFIN1<---------MYB46(3)  <---------DEAR3(1)                              -              ------->GAMYB <---------AtMYB61 <---------ANAC46  --------->ALFIN1                   <-             <------------AtMYB77 --------->ALFIN1  <---------AtMYB61      <-------GAMYB          <--           --------->MYB52(1)<---------MYB46(3)  <---------AtMYB61 <---------DEAR3(1)      <---------HSFB2a(2)          ------>ZmHOX2a(1) <---------DEAR3(1)--------->ALFIN1  <---------AtMYB61          --------->HSFB2a(2)         <---------MYB59 <---------AtMYB61 <---------DEAR3(1)<---------AtMYB61    <------NtERF2  ----   gtagtcgtggtcctaaccgtggtggtggaggtggtggtggtggtggtggtggaggtggtggttgtggtggtggtgctcgttgtcgtcgtaattctagacg  18618100               <---------AtMYB61            <---------DEAR3(1)            --------->ALFIN1            <---------AtMYB61          <---------MYB46(3)         <---------DEAR3(1)         --------->ALFIN1       <---------MYB46(3)      <---------ZAT6      <---------AtMYB61                          <---------ANAC46      --------->ALFIN1                           <-------GAMYB <------MYB46(1)                                <------MYB83 <---------MYB46(3)                             --------->MYB55(2) <------MYB83  --------->ALFIN1                 <------MYB46(1) ---------AtMYB61                               --------->MYB52(2) -------->ALFIN1<---------MYB46(3)              <---------MYB46(3) -------P<---------AtMYB61                  <-----------RAV1(1)                --------->ICU4 -------ANAC46 <---------DEAR3(1)   <-----------GT1                     --------->ICU4          ----- ----->ALFIN1<---------MYB46(3)---------->DOF2 <---------AtMYB61    <------ZmHOX2a(1)      <---------DOF5.7(2)   gggtggtagtggtggtggtggtggaatagtaccaaaagtttccattttgttggttgaagctataccaagaggaaatgagtaatgaattcgagtaaacgaa  18618200                                             ------------>CBF                                <-----------TBP                    --------->AHL20(2) ---------->DOF2          ---------->DOF2     <---------------AGL15      ---------->DOF2         --------->CCA1(2)                     ---------->DOF2     --------->AHL20(2)      <-----------------AGL3              ----------->TBP <---------------AGL15       --------->ARR11(3)                --------->YAB1 ==============================================MADS_MADS    <----------DOF2                    <----- ------>GT1  ----------->GT1 <---------ARR11(3)        <-----------GT1             <---------TOE2(3)   gtaacaaataaagaaagctaaaatatatgtagatatatatagaaagcttcaatcttttaactcttttataaaaagactcaccataaatgttgtcatactt  18618300                                                                                --------->ARR11(3)                                               --------->LBD16                  <-----------GT1                                               ------>ZmHOX2a(1)             --------->YAB1                                           --------->ARR11(3)                --------->AHL20(2)                                 --------->TOE2(3) --------->AHL20(2)      --------->AHL20(2)                     --------->DAG2       --------->RVE1(1)               --------->YAB1    <-----------GT1 ---------->DOF2     --------->AHL20(2)           ----------->GT1      <---------YAB1 -----DOF2    <------------CBF  ----------->GT1<---------YAB1    --------->ZAT6 <---------ARR11(3)   tatatttaacgagtgagattgaaaaagtcaaacttcgttaaaaaaaatcctgataaattcttgttatacactagtaaaataatatccctcttatacttac  18618400                             <------------CBF                           <---------AHL20(1)      --------->AHL20(2)   --------->ARR11(3)                            --------->ICU4      <---------AHL20(2)   --------->AHL20(1)                   <---------AHL20(2)      <---------AHL20(1)--------->AHL20(2)    <------------CBF  <---------YAB1      --------->AHL20(1)<---------AHL20(2)   <---------ICU4    --------->AHL20(2)     --------->AHL20(2)--------->YAB1       <---------YAB1     <---------AHL20(2)          <---------   --------->TOE2(3)  ----------->TBP   <---------ZAT14       --------->YAB1         <---------ICU4   aaaaacattatattttctcaaggtataaaaatattgcaagtgtatactaattgtctaaaaccaattttaattgcaattacgaagtcaacatttctttgtt  18618500                                                                                           <---------ANAC55(2)                                                                   <---------DAG2          <---------ANAC46                                                              ---------->DOF2              ----------                                                         ----------->GT1  --------->LBD16  --------->ANAC58                                                       <---------ANAC58  --------->HSFB2a(2)                              <---------ATHB12<---------MYB52(1)   <----------DOF2         --------->ANAC58                     --------->AHL20(2)<---------MYB46(3)<---------MYB46(3)                --------->ANAC55(2) -DOF2           --------->AHL20(2) <---------LBD16    <---------ANAC58  <---------HSFB2a(2)   gatgaaaactgtatgagcataaattaaaaccaatgttttgggggttcccttgtttttgctggttaaaagctttttccagagattgagagcgagacgtaaa  18618600  Previous    Next  AGI:  At3g50180.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71911.1); contains InterPro domain Protein of unknown function DUF247, plant (InterPro:IPR004158) Range:  from: 18615924    to: 18618145    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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