Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          ------>MYB83        ------>MYB46(1) --------->ANAC58                                     <------MYB83 --------->ANAC58                                     <------MYB46(1) -------->SPL7                                <-----------------AGL1 -------SPL7                              <---------ANAC58 ------MYB46(3)                           <---------ANAC58   --------->ALFIN1   <-----------ARR10 -----------AtSPL3                       ---------->ID1    <---------ANAC46 <-------TEIL--------->LBD16 -----------AtSPL8              <------ZmHOX2a(1)   <--------P   <---------GLK1(1) <----------DOF2 <-   ggtacggaccaagcgaaacagtctgagggaaataggacttcttgtcgttctcttgtaggtaatgtggaactctgtagatgcagagctttccccaaattgt  18614400                                                            ------>ZmHOX2a(1)                                                            <-----------RAV1(1)                                                            ======================RAV                                                          ----------->RAV1(2)                                                     ------->GAMYB                                                    <------------AtMYB77                                                    <<<<<<<<<TAC1                                                   --------->ZAT2                                                  --------->MYB52(1)                               --                                                  ------>MYB46(1)                                 <--                                                  ------>MYB83                                   <---                                                <---------MYB55(2)                               ----                                               --------->ANAC46                                  ----                 <---------ANAC58              --------->ANAC58                                  ----            --------->ARR14(2) <---------CCA1(2)--------->MYB46(3)                               <---            <---------ARR14(2) ---------->ID1  --------->ANAC58                                 -----    <------NtERF2<---------ANAC58           =======================HOX2a_HOX2a                ------>ZmHOX2a(1)  <---------ANAC46         <---------ANAC58 <------ZmHOX2a(2)                          --------->AtMYB61  <---------bZIP60(1)      <---------ANAC58<---------ARR11(3)                          <---------ALFIN1  --------->bZIP60(1)<---------ANAC58      --------->ARR11(3)         ----------->RAV1(2) <---------ALFIN1 ----------RAV1(1)   <---------ANAC58     <---------At4g35610 <---------AtMYB61       --------->MYB46(3)   tgtgtcgtcgtctctatctgcttgctcgagcttgtctcttattgagatcacccaactgtctcctgtggtctcttctggcctctcttctaccacctcctta  18614500                                                                                     ------>ZmHOX2a(2)                                                                                    <------ZmHOX2a(2)                                                                                   <---------ARR14(2)                                                                                   --------->ARR14(2)                                                                                   <---------ARR11(3)                                                                                   --------->ARR11(3)                                                                                   <---------AGP1                                                                               <-------TEIL                                                                              --------->GLK1(2)                                ------->MYC2                                 <---------GLK1(2)    --------->ANAC58            ------->MYC3                                 --------->ARR14(2)    --------->ANAC58            <-------MYC3                                 <---------ARR14(2)   <---------LBD16              <-------MYC2                   --------->LBD16--------->CCA1(2) --------->HVH21              ------->TEIL                    <---------HSFB2a(2) <---------ARR14(1) -------MYB59           --------->ARR14(2)                   <---------LBD16 --------->ARR11(1) --------------AG<---------ANAC58                        <---------HSFC1(2) <---------GLK1(1)     <-- ------->RAV1(2) <---------ANAC46                      <--------P        --------->REM1(2)        <-- ----->ANAC55(2) <---------ANAC58   <---------AtMYB61----------->GT1    --------->ALFIN1       <----- ------------->AGL1     <---------ARR14(2) --------->ATHB12 --------->MYB52(1)--------->ARR14(1)  <-- --------------AGL1   <---------MYB46(3)  <---------YAB1 --------->HSFC1(2)----------->ARR10   ------ --->P   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->MYB59--------->HSFB2a(2) <---------CCA1(2)--   cctgactcggaatgagactgcttgtggttctgcacgttttggtcttgattcggtctggtaacttccggtaaaccgtggagattcggatcttgaaccggtt  18614600      <------MYB46(1)      <---------MYB46(3)      <------MYB83     <---------AtMYB61    <--------P                                                                      <---------ANAC58  <-----------RAV1(1)                                                               <---------ANAC58  --------->ALFIN1                                                               <---------WOX13(1)  <---------ZAT6                                                               --------->ATHB12 -------ANAC58                                                                 <---------ICU4 -------ANAC46                                                                <---------YAB1 ----ARR14(2)                                                                 --------->ICU4 -------ANAC58                                  --------->ANAC58            --------->YAB1 --->ARR14(2)                                   --------->ANAC58   <----------DOF2 <---------MYB46(3) ------->LBD16<<<<<<<<<<MYB80                  <---------------AtSPL8      <---------YAB1        <---   ccgagtgttggtttttggtttgaaatttttgtctgagcttgaggctgagcaagtaccaagttaacatgtctttgttgatgataattggttgtccatcgga  18614700                             <-------GAMYB                            <---------MYB46(3)<------ZmHOX2a(1)   --------->TOE1(3)      <---------ANAC58   --------->LBD16   --------->TOE2(3)      <---------ANAC58 <---------LBD16       --------->At5g28300          ------- ------->TEIL    <---------MYB52(1)        <-----------RAV1(2)  ----------->GT1              -------- ------KAN4(2) --------->ATHB12      <----------DOF2       ---------->DOF2  *TSS  <---------ANAC46   atgaacattaactaaaaccattggttttgctggttgaagcttttttcaggagattgagagcaaaagctgtaatttcgaaatgttaagtgcaaacgctgta  18614800                                          --------->ANAC46                                       ------------>CBF                                      <-----------GT1                                            <---                                     <-----------GT1                                  ---------->DOF2     ---------->DOF2             <---------AHL20(2)                                 --------->AHL20(2)    <---------AHL20(2)           --------->AHL20(2)                                 <---------AHL20(2)   <---------AHL20(2)           <---------AHL20(2)           ---------->DOF2    --------->AHL20(2) -->At5g28300                --------->AHL20(2)           ----------->TBP       <---------AHL20(2)<-- --->GT1                     <---------AHL20(2)--------->ANAC46     --------------->AtSPL8     ------   actaatttaaagctgtgatttggccatacatttatttattttccaatccacataactcttataaaaagacttcgtactcttataaattaaaagactctca  18614900                                              --------->YAB1                                         --------->MYB46(3)                                        -------->P                                        ------>MYB46(1)                                        ------>MYB83                                                <                 --------->HSFB2a(2)   ------>MYB83                                                <-                 <---------HSFB2a(2)   ------>MYB46(1)                                         ------                <-----------------AGL3 <---------ALFIN1                                        ------       --------->HSFB2a(2)           --------->MYB46(3)                                        <-----   <---------ANAC58                  <---------MYB55(2)                                        <-----   <---------ANAC46                 --------->ANAC58                                 <---------YAB1<-   <---------ANAC58                 --------->ANAC58          <---------ICU4       --------------->AGL15 ------YAB1     ===================================================================================MADS_MADS -------ICU4--------->HSFB2a(1)     --------->ANAC46       --------->YAB1          <---------------AGL15 --->YAB1   <---------HSFB2a(1)  --------->MYB46(3) ---------->DOF2               <---------YAB1  <--   taaatgcttgtagaattttctataaatgaaattcaaacacccaacctctcatagtaaagactcataagtgcttagtactagactactattagtagaatat  18615000  <---------YAB1 -----------GT1                                                                      <---------GLK1(2) --------AHL20(2)                                                             --------->GLK1(2) --->ARR11(3)                                                                <---------ARR11(3) --->AHL20(1)                                                                --------->ARR11(3) ----ARR11(3)             ---------->DOF2                                    <---------GLK1(2) ----AHL20(1)  --------->ATHB12                                              --------->ARR14(2) --------YAB1 <---------ATHB12                      ---------->DOF2          <---------ARR14(2) -------AHL20(2)  --------->ALFIN1        --------->YAB1                   ----------->ARR10 ------>ZmHOX2a(1)   ttttattattcattcaatgagtggagactaaagcttccaaactttcataaaaaaaaaagactggagactcatataaaaagattctcatattcttcctgta  18615100                                                                  --------->DAG2                                                        <---------ZAT14                                                        --------->ZAT18                                                        <---------REM1(2)                                           --------->ZAT2        ---------->DOF2      <-----------GT1                                           <---------ZAT2   ----------->GT1    <---------AHL20(2)               ----------->GT1      <---------CCA1(2)   --------->ZAT14      <---------RVE1(1)       <---------DOF5.7(2)      --------->AHL20(2)    <---------ZAT18        <---------CCA1(1)     --------->DOF5.7(2)       <---------ICU4         --------->ZAT14       <---------ARR11(3)    <----------DOF2           --------->ICU4        <---------------AtSPL8  --------->ARR11(3)     --   attgttctttaacgagattgaaaaatgtgctaatttttatatccaagctgtatttgtgtacactgaaaaaagtcatgagattttttttttactaaatctg  18615200                                                   ----------->HVH21                                                 ----------->GT1                                                 <------MYB83                        <---------LBD16    ------>ZmHOX2a(1)                     <----------DOF2      --------->TOE2(3)               --------->TOE2(3)       <--                  ------->TEIL     <---------ANAC55(2)         --------->LBD16                   ----                  --------->GLK1(2)--------->ANAC55(2)       ----------->RAV1(2)                ----- ------->YAB1----------->GT1  <------ZmHOX2a(1)  <------MYB46(1)         --------->At4g35610    <----   atcaaaatacacaaatggtgaatcttttcggaggaatatgtaatcctcatttggtgacattccccctggtatattagcttaatactcccttccttctagc  18615300  Previous    Next  AGI:  At3g50170.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50150.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50130.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71911.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN59797.1); contains InterPro domain Protein of unknown function DUF247, plant (InterPro:IPR004158) Range:  from: 18612738    to: 18614776    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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