Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                -------                                                                                              -------                                                                                           --------->At4g35610                                                                                           <---------At4g35610                                                                                      --------->ARR14(2)                       <---------AHL20(2)                                             --------->ARR11(3)                       --------->AHL20(2)                                             <---------ARR14(2)                      --------->AHL20(2)                                        --------->ANAC46              <---------GLK1(2)           <---------KAN4(2)                     --------->ANAC58              --------->ARR14(2)     <---------At4g35610           <---------ALFIN1   <---------ARR11(3) ---GT1   <---------ZAT14            --------->At4g35610      --------->ARR14(2)--------->ANAC58<----   ttgagtattgagtccagtttctcatttaatcaaacacttagcagaatatacagaaacgactccaaattcccacattatacataagcaatatccagctaaa  18595100                                                                      <------ZmHOX2a(1)                                                          <---------LBD16                                                        <---------ANAC58                                                        <---------ANAC58--------->GLK1(2) <---------ZAT14                                              --------->ANAC58      --------->ANAC58      <---------ZAT18                          <---------At4g35610 --------->ANAC58      --------->ANAC58      --------->ZAT14                          --------->At4g35610 --------->ANAC46  <------ZmHOX2a(1) --------->ZAT18 -->MYB52(1)            --------->YAB1        <---------ANAC55(2)   <---------TOE2(3)     --------->ZAT18 --->DOF2            --------->YAB1        --------->ARR14(2) <---------TOE2(2)   <---------SPL7 -----TOE2(3)     --------->HSFB2a(2)      <---------ARR14(2) <---------TOE1(2)   <---------ZAT14   ggttttggctaaattcgcttctataatcatctgaaaatagcactgaatacgcaaaattgcttcggaggataaggaatctaagaccgtactagtgcacatt  18595200                                                                       --------->YAB1                                                              ------>ZmHOX2a(2)                                                             <<<<<<<<<GATA-3                                                             <<<<<<<<<GATA-2                                                             <---------GLK1(1)                                                             <<<<<<<<<GATA-4                                                             <------ZmHOX2a(2)                                        ------->GAMYB        <<<<<<<<<GATA-1                                       --------->ANAC58     --------->ARR11(3)                  <-------TEIL         --------->ANAC58     <---------AGP1              ----------------------->TaNAC69(2)            <---------ARR11(3)      <-------TEIL ----       ---------->DOF2                 --------->ANAC46    <---------CCA1(2)        --------->ZAT18   gctataatccaaaggtcgcattcatttccacatctctctcaacgccaaattcaatggaactagatctctcaaatcagaaaatcaagtgcatcatctagca  18595300                                                           ----------->GT1                                                           <----------ID1                                                         ---------->DOF2                                                <------NtERF2                                           --------->MYB46(3)                                          --------->At4g35610                                    ---------->DOF2---------->DOF2                          ---------     <------ZmHOX2a(2)          <----------ID1<---------DEAR3(1)                          <---------LBD16   --------->At4g35610       --------->ARR14(2) --------->LBD16                          --------->MYB52(1)   <---------At4g35610       <---------ARR14(2) ------>NtERF2                        --------->ATHB12 ----->At4g35610         ----------------->AGL1--------->RAP2.6(2)                   --------->YAB1   gaggcagatcaaaaatgaaacaaggcttccaaattcgacaaagcatcggccgcgaaagaaaaagaaaaaaaacgagagagtagacattgattaccggaga  18595400                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                             <-------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                           --------->At4g35610                            --------->LBD16                                             --------->At4g35610                           --------->ANAC55(2)                                          <---------At4g35610                           <---------ANAC58                         --------->At4g35610 --------->ZAT2                           <---------ANAC58                         <---------ZAT2   --------->ZAT14-                          <---------LBD16                           <---------At4g35610 <---------ZAT2           <---------HSFC1(2)              <-------TEIL<------ZmHOX2a(1)    <---------YAB1 <---------   <------ZmHOX2a(1)    <-----------GT1   --------->GLK1(2)  --------->ATHB12        --------->At4g35610 >LBD16    --------->HSFC1(2)      ---------->DOF2  <------ZmHOX2a(1)   <---------GLK1(2)  ----------   atgcaggacgataagcttcgagtttttttccgtagcgaaaagagattcaatggaggaggaagaagattggagctgattctgattcagagcagcagcgtac  18595500                 --------->LBD16                <---------ANAC46               <---------LBD16              --------->ALFIN1             --------->TOE1(2)             <-------MYC3      --------->At4g35610      <---------At4g35610 -------->HSFB2a(1) ---------HSFB2a(1) ---------HSFC1(2) ---->ANAC58 ------->MYC3 ---->ANAC46 <-------PIF5 ---->ANAC58 ------->MYC2 --->SPL7    <-------MYC2 ----------------WRI1 --SPL7     <---------ANAC58 <------ZmHOX2a(2)                                                ------- -ANAC58    <---------ANAC58 ------------>CBF                                                 <------ -ANAC46   <-----------------------TaNAC69(2)       <---------ALFIN1                --------->ATHB12 -ANAC58   ------->TEIL <-----------GT1      --------->YAB1                     <---------ANAC58 -------->HSFC1(2)*TSS  --------->MYB52(1)  <---------YAB1                      <---------ANAC46 ------AtSPL3------->MYC4  ------->GAMYB   <-----------GT1          <---------GLK1(2)<------------CBF ----->AtSPL8------->PIF5<---------TOE2(3)<-----------GT1      <-----------HVH21<---------ANAC58  ---   gaaatttccgatgaacgtgcggagattaacgatcaattcccgttttatcatcccccgctcttgccggtcagaattttgtgtttcgttcattgggcctata  18595600                                                                                       <---------ANAC55(2)                                                                                       <---------ANAC58                                                                                       <---------bZIP60(2)                                                                                       <---------bZIP60(1)                                                                                       --------->TGA1a                                                                                       <---------TGA1a                                                                                       --------->bZIP60(1)                                                                                       <---------O2                                                                                       --------->O2                                                                                       <---------ANAC58                                                                                       <---------ANAC55(1)                                                                                    ----------->HVH21                                                     <---------------AGL15          ----------->TGA1                                                     --------------->AGL15         <-----------HVH21                                                    <-----------------AGL2        <---------ANAC46                                                    <-----------------AGL1        --------->ANAC55(2)                                                    <-----------------AG          <---------ANAC55(2)                                                    ----------------->AGL1        <---------ANAC58                                                    ----------------->AGL2        <---------ANAC58                                                --------->DAG2                   <-------TEIL                                               ==================================================bZIP_DOF        <---------YAB1 <------MYB83           ---------->DOF2             <---------ANAC58 -->ARR14(2)           <------MYB46(1) <---------ARR11(3)                 <---------ANAC58 ---ARR14(2)         <--------P <----------DOF2---------->DOF2         <---------ZAT18 --------->ANAC55(2) -------->GT1     ------>ZmHOX2a(1)    --------->ARR11(3)             --------->ALFIN1 <---------ANAC46   tggtcacattatgttgaatcctagttggtctgggccttatagatatcgaaaaggcccagttttggtaatccagtgggcgtaagtgcgtgacgtgtcaatg  18595700                     ------>ZmHOX2a(1)                 <---------ARR14(2)                 --------->ARR14(2)                                                                 <                <---------GLK1(1)                                                                  --          ==================HOX2a_HOX2a                                                  xxxxxxxxxxxx          <------ZmHOX2a(2)              <-------TEIL    --------->TOE2(3)  --------->AHL20(2)     --         <---------ARR11(3) <---------AHL20(2)           --------->TOE1(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         --------->ARR11(3) --------->AHL20(2) <---------AHL20(2)       <---------AHL20(2)         <-        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->AHL20(2)     XXXXXXXXXXXXXXXXXXXX>MIR161.1<- --------->YAB1 <---------CCA1(2)     --------->GLK1(1)  --------->YAB1 --------->AHL20(2)      <xxxx   taatcacaaacgatctacatatcctactatataatttgggaaatacattttaaatgtaatcttaatttttgtaagtaattacatagggatgccattagaa  18595800                                                                       --------->AHL20(2)                                                                       <---------AHL20(2)                                                                       --------->AHL20(1)                                                                      <---------AHL20(2)                                                                      --------->AHL20(2)                         --------->ANAC55(2)                       <---------AHL20(2)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->AHL20(2)                   --------->AHL20(2)                              --------->AHL20(1)                   <---------AHL20(2)                             <---------AHL20(2)                  --------->AHL20(1)                              --------->AHL20(2)           ----------->GT1       <---------TOE1(3)            <---------AHL20(2)                <----       ---------->DOF2<---------AHL20(2)                      --------->AHL20(2)               ------ ---------AHL20(2)<---------AHL20(1)                          --------->AHL20(1)           --------->ICU4 ------->AHL20(2) --------->AHL20(2)                          <---------AHL20(1)        <-------TEIL xxxxxxxxxxx>smallRNA(le3)  ------->TEIL   ----------->GT1--------->AHL20(2)      --------->ANAC58 ------->AHL20(1) <---------AHL20(2)      --------->DAG2  <---------AHL20(2)      --------->ANAC58 --------AHL20(2)--------->AHL20(2)      ---------->DOF2 <---------AHL20(1)     --------->MYB52(1) --------AHL20(1)<---------AHL20(2)<------ZmHOX2a(1)     --------->AHL20(2)<---------AHL20(2)  <----- xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------TOE2(3)       <---------AHL20(2)--------->AHL20(2) <------   ataaaattttaaagagtaaattaatttatgtatttaaggattaaaaagtcaaatactaatttaattaattaaattaattaaaaaacgaaatacattatta  18595900                                                                   --------->AHL20(2)                                                                  <---------AHL20(1)                                                                  <---------AHL20(2)                                                                  --------->AHL20(2)                                                              --------->AHL20(2)                                                              <---------AHL20(2)                    <                                                          --------->AHL20(2)                      <--                                                          <---------AHL20(2)                   ------                                                         <---------AHL20(2)                    <-----                                                         <---------AHL20(1)                    ------                                                     <---------AHL20(2)                    --------->AHL20(2)                                                     <---------YAB1<---------AHL20(2)      <---------AHL20(2)       --------->AHL20(1)                            --------->AHL20(2)                  --------->TOE2(3)       --------->AHL20(2)                           --------->AHL20(2)                   <----------DOF2      --------->YAB1                                <---------AHL20(2)                <---------ARR11(3) -----AHL20(2)     --------->YAB1            >>>>>>>>>RAP2.2 --------->AHL20(2)       --------->ARR11(3) --->AHL20(2)     <---------ATHB12         <---------ARR11(3)<---------AHL20(1)     <---------AHL20(2) ----AHL20(2)   --------->WOX13(1)         --------->ARR11(3)<---------AHL20(2)    --------->AHL20(2) ---YAB1 --------->YAB1              --------->CCA1(2)   --------->AHL20(2)    ----------->GT1 <-----   attttcaaaaataatagccaatcaaaatcaacatataagatttgatatctaaattttaattaatttaatttaatttcaatatggattaaatctttaattt  18596000  Previous    Next  AGI:  At3g50110.1    Description:  phosphatase-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G19420.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71913.1); contains InterPro domain Protein-tyrosine phosphatase, dual specificity; (InterPro:IPR000340); contains InterPro domain C2 tensin-type (InterPro:IPR014020); contains InterPro domain Phosphatase tensin type (InterPro:IPR014019) Range:  from: 18591592    to: 18595518    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g50120.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50150.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50130.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G50170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71911.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN59797.1); contains InterPro domain Protein of unknown function DUF247, plant (InterPro:IPR004158) Range:  from: 18595983    to: 18598295    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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