Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         ------>MYB83      <---------ALFIN1     <---------MYB55(2)     <---------MYB111(2)     --------->MYB46(3)     --------->DEAR3(1)    --------->ANAC58  <-----------GT1 ---------->ARF1   --------->DEAR3(1) -----------HVH21  <---------ALFIN1 ------->bZIP60(2)--------->ANAC58                      --------->At4g35610 ------->ANAC46   --------->ANAC58                      <---------At4g35610 ----HVH21<----------DOF2               <---------HSFB2a(2)                    <---------YAB1 >O2--------->ANAC58                <----------DOF2--------->RVE1(1)         <-----------GT1 >TGA1a------>MYB46(1) <-----------HVH21--------->HSFB2a(2)              <---------TOE2(3) >bZIP60(2) ---------->DOF2   <-------TEIL --------->YAB1            <---------ICU4             -----   catgtcacccacctttaagcacccccttcacatacatactttctataacaaaaatatcagcttctagttcatatttatgttacaataactcgagtgaatc  18533100                                                          ---------->DOF2                                                      ------>MYB46(1)                                                    <---------MYB59                                                    <---------MYB46(2)                                                    <---------MYB111(1)                                                 ------>NtERF2        <---------YAB1                                                --------->DEAR3(1) <---------------AGL15                                            --------->MYB46(3)     --------------->AGL15                     ==============================================================MADS_MADS    -----                     --------------->AGL15  --------->DEAR3(1)     ==================================                     <---------------AGL15  <---------MYB55(2) --------->GLK1(2)                <----                 <----------DOF2          ------->TEIL--------->MYB52(1)                        -----     --------->AHL20(2)            --------->AHL20(2) ------>MYB83 ------>ZmHOX2a(1)            <----     <---------AHL20(2)         ----------->GT1 ----------->HVH21 --------->TOE2(3)             <---- ---->YAB1    --------->ICU4  <------ZmHOX2a(1)--------->SPL7 <---------GLK1(2)             <--------   atactaaaaaaatgtaatgctttctctaaataggagataaaatgcaccctccgacctaactaaagattccttattttagctatttaagacatattgcaca  18533200                                                          <---------ARR14(2)                                                          <---------ARR11(3)                                                      --------->At4g35610 -->MYC3                                              <---------At4g35610                     ------- ======================================================MADS_MADS                        --------->ANAC58 ---MYC3                                      ----------->GT1 --------->AtLEC2          --------->ANAC58 -->MYC2                               <---------------AGL15------>ZmHOX2a(2)           --------->ANAC46 ---MYC2 <---------ANAC55(2)     <---------ARR11(3) --------->DAG2                ----------->RAV1(1) ---MYC4<-------TEIL             --------->ARR11(3)---------->DOF2               --------->ANAC46 -ZAT18--------->CCA1(2)       ------->TEIL>>>>>>>>>EIN3  --------->ARR11(3)   --------->ANAC46------   tgtatagagatacataaacacatatgcaatatgcacatcttctatacattgaaaaaagctgatcttgcaaatatttgtcttacacaacacaagcgaccaa  18533300                   <---------TOE1(3)                   <---------TOE2(3)       <---------ARR14(2)                                         <----------DOF2    <---------ANAC58     --------->ANAC58                     <----------DOF2    <---------ANAC58     --------->ANAC58                 <---------CCA1(2)   <-------TEIL    --------->DAG2     --------->ANAC58    ---------->ID1               ---------->ID1 -->AtMYB61    --------->YAB1         --------->ANAC46  --------->O2               <----------DOF2 ---->DOF2    <---------ATHB12        --------->ANAC58  <---------O2   ------>ZmHOX2a(1)    <--------   agcgatgcgtttcccaatgataaggttacgacatacttacacgactctctctattgtctcgtctctttctttcctcatccctctcctttgtctcctttca  18533400                                  --------->ARR11(3)                                --------->ICU4                            --------->TOE2(3)                           --------->ANAC46                            <----------DOF2                           <---------ANAC55(2)            --------->ANAC58                           <---------ANAC46               --------->ANAC46                     *TSS          <---------DAG2   ----------->GT1                --------->ANAC58     ---------->ID1------>ZmHOX2a(1)          <----------DOF2  --------->ANAC55(2)          <---------ALFIN1<------------------------ANAC81     <-----------GT1      <---------TOE2(3)     <------------CBF --------->ZAT14         <-----------GT1 --DOF2<-----------GT1<----------DOF2       --------->bZIP60(2)  <---------ZAT14  <----------DOF2  <-   ctctatttttcacttttcagaatacttttacgtaaaaatcatggacatgtcattgtctccaccctactatactctttttttgttctttttgtttcctctt  18533500                                                                            --------->ANAC46                                                                            ----------->HVH21                                                                         ============================                                                                         -------->P                         ------->TEIL                             --------->ARR14(2)                     --------------->AtSPL8                       <---------ARR14(2)             <---          <-----------GT1<-------TEIL                             <---------GLK1(2)<---------GLK1(2)       --------->YAB1--------------->AtSPL3                     --------->LBD16    <---------ARR14(2) ----------HVH21     <---------------AtSPL8                   <---------LBD16      --------->ARR14(2)   gtgtcacaaaaataacaagattaaacgtacatttctctctaaaaccagactcaaatgaccaaaacccggattctcaacccgacccgattcccttctccca  18533600                   --------->ANAC58                   --------->ANAC58                  <------NtERF2                <---------DEAR3(1)                ----------->HVH21                --------->DEAR3(1)               --------->RAP2.3(1)               ------>NtERF2               <------NtERF2               --------->ATERF1(1)              ------>NtERF2              <---------ATERF1(1)              <---------RAP2.3(1)              --------->LBD16             <---------DEAR3(1)            --------->ATERF1(1)                           --------->RAP2.6(2)            <---------At4g35610                           --------->DEAR3(1)            <------NtERF2                                 --------->DREB2C(2)            --------->At4g35610                           ------->GAMYB            <---------LBD16                               --------->ANAC46            <---------ABI4(1)                            --------->MYB46(3)           <---------ATERF1(1)                           --------->ATERF1(1)           <---------ERF1                                --------->RAP2.3(1)           <---------RAP2.3(1)                          <---------ATERF1(1)          <---------DEAR3(1)                           --------->DEAR3(1)          <---------RAP2.3(3)                          <---------ALFIN1     <---------O2<---------ATERF1(1)                  --------->ATERF1(1)     --------->O2------>NtERF2                       <---------ATERF1(1)     --------->ANAC55(2)                             ------>NtERF2     --------->TGA1a                                 <---------RAP2.3(1)     <---------bZIP60(2)                            --------->ANAC46     <---------TGA1a                               --------->ZAT14     <---------ANAC58                              <---------ZAT18     <---------ANAC55(2)                      <---------ZAT14                                       <     <---------ANAC55(1)                     <-----------HVH21                    <----------DOF2  --     <---------ANAC58                        ------>ZmHOX2a(1)               --------->At4g35610   --     <---------ANAC46                     ------>ZmHOX2a(1)------>NtERF2    <---------DEAR3(1) ------  <---------MYB52(1) --------->DOF5.7(2) <---------ALFIN1<------NtERF2    ------->GAMYB        <----- ==============MYC_MYB               --------->At4g35610--------->ABI4(1)----------->HVH21    ------>MYB46(1) ------ALFIN1<---------ANAC46        <---------At4g35610------>NtERF2    --------->MYB46(3)   ------>MYB83   aacccttacgtggctgcggcgacgctaacttcatggaacagctcctccttcactgcgccaccgccatagactccaacgacgctgcattaactcaccaaat  18533700                                                                                        ------>NtERF2                                                                                        <---------ATERF1(1)                                                                                       --------->RAP2.3(2)                                                                                       --------->DEAR3(1)                                                                                       --------->RAP2.3(3)                                                                                      <------NtERF2                                          <---------MYB55(2)                          --------->DEAR4(2)                                          --------->MYB46(3)                          --------->RAP2.3(1)                                         --------->ANAC58                             --------->ORA47(2)                                         --------->ANAC46                             --------->ATERF1(1)                                  <---------ATERF1(1)                             --------->ANAC46                                --------->At5g28300                     ====================MYC_MYB                               ----------->GT1                      ------>NtERF2 --------->ANAC58                              <---------DEAR3(1)                    <---------LBD16  ------>NtERF2        ------>ZmHOX2a(1)   --------->MYB52(1)                      --------->LBD16 --------->ANAC46    --------->ARR14(2)     ----------->HVH21------>MYB83          <---------LBD16 --------->TGA1a ---------LBD16           --------->MYB46(3)--------->MYB52(1)    ==========================MYC_MYB --------->RAV1(2)        <---------MYB55(2)------>MYB46(1)       ---------->CDC5 --------->ANAC58 ---->ZmHOX2a(1)         --------->ANAC46--------->ANAC58 --------->LBD16      ----------->HVH21 --->ARR14(2)           ----------->RAV1(1)--------->MYB55(1)    ------>ZmHOX2a(1)<---------TGA1a ----ARR14(2)          <---------ALFIN1<---------ALFIN1 <---------LBD16 <-------GAMYB<---------ATERF1(1)   cctctgggtcctcaacaacatcgctccaccagacggtgactccacccaacgtcttacatccgcattcctccgcgcgttgctctcacgcgccgtctccaaa  18533800                                                                                                    -                                                                                               ------                                                                                               <-----                             ------>MYB46(1)                                                  <------                             -------->P<---------At4g35610                               <---------ALFIN1             --------->MYB46(3)--------->TOE2(3)                                       <---------MYB59          --------->YAB1     ------>MYB83                                             --------->ANAC46    --------->ZAT6          ------>ZmHOX2a(1)                                   <---------ANAC58   <-    --------->REM1(1)      <---------MYB111(2)                                  <---------ANAC58  <--   <---------ZAT14         <---------MYB59  --------->GLK1(1)                <----------DOF2  <------   --------->ZAT14    --------->At4g35610   ------->TEIL                <---------At4g35610   <------  <---------ALFIN1 <---------MYB52(1)  --------->At4g35610    <---------ANAC46  <---------ANAC46 <---   acccctacactatcatccaccattagcttcctacctcaggccgatgaactccatcgtttctcagtcgtggagttagccgctttcgtagacctcactccgt  18533900                                        --------->DEAR3(1)                                      <---------At5g28300                                  ------>ZmHOX2a(2)                                  --------->YAB1                                <---------ARR11(3)                                --------->ARR11(3)                             ------>NtERF2                           <---------LBD16                          ------->GAMYB ------->GAMYB                         --------->DEAR3(1)     <---------ARR14(2)--------->MYB52(1)     --------->ARR14(2)<---------ATERF1(1) <------NtERF2        <---------WRKY38(1)        <---------TOE2(3) ----->NtERF2        <---------MYB52(2) --------->ANAC46 --->LBD16           --------->MYB46(3)--------->DEAR3(2) ------HVH21        --------->At4g35610<------------AtMYB77              --------->WRKY38(1) ---ANAC46  <-------TEIL --------->ANAC46        <---------TOE1(3)       --------->WRKY45 --------PCF2--------->ATHB12--------->LBD16<-------GAMYB                --------->WRKY12 -------ABI4(2)     <---------At4g35610--------->MYB46(3)               --------->DOF5.7(2) ---ANAC58<---------ARR14(2) <------NtERF2 --------->DEAR3(1)   <-------TEIL ---ANAC58--------->ARR14(2)--------->DEAR3(1)--------->WRKY12 <-----------HVH21 --------HVH21      ------>NtERF2<------ZmHOX2a(2)        --------->MYB52(1)                        <   ggcaccggttcggattcattgcagccaacgccgcgatcttaaccgccgttgaaggttactcaacggttcacatcgttgacttaagtttgactcattgtat  18534000  Previous    Next  AGI:  At3g49950.1    Description:  scarecrow transcription factor family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G67411.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62656.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 18533495    to: 18534891    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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