Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <---------AHL20(2)                                  ------>ZmHOX2a(2)                                 --------->CCA1(2)                                 <---------At4g35610                                 <------ZmHOX2a(2)                  --------->ANAC58                                 --------->At4g35610                --------->ANAC58                                <---------ARR11(3)               ----------->TGA1                                --------->ARR14(3)               ----------->HVH21                                --------->ARR14(2)             <---------AtLEC2                ------                                --------->AGP1               --------->AtLEC2                  ------                                <---------ARR14(2)     ------>ZmHOX2a(2)                   --------->ANAC58         <<<<<<<<<<<<<<<<<LFY   --------->ARR11(3)    <------ZmHOX2a(2)                    --------->ANAC58 ---------WRKY38(1)            <---------GLK1(1)     --------->ARR11(3)       --------->AHL20(2) ---------WRKY12              ----------->ARR10      <---------ARR11(3)       <---------AHL20(2)  ---   tgtcaacgaataaacactggatagatagaattgagatctgccatcaaataatcgagatcgttcatgcatgacgcaaacatttatatagaaatgaagcaag  18524900                                                                                           <------NtERF2                                                                                           ----------                                                                                          ------>NtERF2                                                                                         <---------ARR14(2)                                                                                         --------->ARR14(2)                                                                                      --------->ANAC46                                                                                      --------->ANAC58                                                                                      --------->ANAC58                                                                   <------NtERF2     <---------LBD16                                                                  --------->ANAC58 <---------ARR14(2)                                                                  --------->ANAC58------>NtERF2          ---------->DOF2                     ---------->DOF2   <------ZmHOX2a(1)----------->HVH21      <---------YAB1                    ----------->GT1  --------->ATHB12       <------NtERF2       -   --------->GLK1(2)                  ---------->DOF2    <---------MYB46(3)    --------->LBD16      - --->ANAC58                       ---------->DOF2       <---------ATHB12      <---------ANAC46 ------ --->ANAC58                   --------->AHL20(2)      --------->MYB52(1)      <---------LBD16 <------ ------->DOF2                 <---------AHL20(2)    --------->MYB46(3)       <---------LBD16 <-------   taaagaatatgaaaaagaatagaaatgagaaatttataaagaaagaaaaaaagaaccaatggttgaggaggcaactattcgcggggacacggagccgttc  18525000                                                              --------->ANAC46                                                              --------->ANAC58             ------>MYB46(1)                                                            <---------ALFIN1               ------>MYB83                                                          --------->AtMYB61         --------->AHL20(2)     <---------ALFIN1                                     ------->GAMYB             <---------AHL20(2)   <-----------HVH21                                    -------->P               --------->ATHB51  --------->ANAC46                                    <---------MYB55(2)         <---------ICU4 --------->MYB46(3)                          ------>MYB83--------->MYB46(3)      <--------HAHB4 ----->AtSPL3                                ------>MYB46(1)--------->ANAC46    --------->ICU4 -------->ANAC58                             -------->P------->GAMYB            <---------YAB1 -------->ANAC58                           --------->MYB46(3) --------->ANAC58--------->YAB1 -------- --->SPL7                    ------>ZmHOX2a(1)        <---------MYB111(2)  <----------DOF2 --------->MYB52(1) ---MYB52(1)         <----------DOF2 <---------ICU4<---------WRKY38(1) <-----------GT1<-----------GT1 --SPL7      <---------GLK1(2)      ------>ZmHOX2a(1) --------->MYB46(3)<-----------GT1  <---------MYB59   gcacccatcaccttggaatctctctttcttcctctctcctcatcaccaactagtcaacaaccacacaccatttttaactttcataattaaacctaacata  18525100                                                       <---------ARR11(3)                                                       <---------AHL20(1)                                                       --------->ARR11(3)                                                       --------->AHL20(1)                                                       --------->AHL20(2)                                              --------->AHL20(2)      -------->ATHB1                                           --------->YAB1             <---------ICU4          <------                                          <---------YAB1<---------AHL20(2)                  <------MYB83                                         <---------TOE2(3)            --------->YAB1        <------MYB46(1)                              --------->AHL20(2)       <---------AHL20(2)                 <--------P                              <---------AHL20(2)      --------->AHL20(2)        ----------->GT1   <--                             --------->AHL20(2)   <---------AHL20(2) <---------ATHB12   <------MYB83  <---------AHL20(2)         <---------AHL20(2)   --------->AHL20(2) --------->ICU4     <------MYB46(1) ->YAB1                  --------->AHL20(2)-------->HAHB4          --------->WOX13(1)  --------->MYB59   acatttttttttgtataaactatagcataaattaaattcagttaatgataaaataaatatattttgtagcaatcattctattttgtaatttggtagggct  18525200                                                 --------->ANAC58                                       <---------AHL20(2)                                    --------->YAB1                                   <---------AHL20(2)                                   <---------YAB1--------->ANAC58                                  <---------AHL20(1)                                  --------->AHL20(2)               <-----------GT1    --------->AHL20(1)  ----------->HVH21           <---------ICU4    <---------AHL20(2)  --------->ANAC46          --------->ICU4     --------->AHL20(2)---------->DOF2               <---------YAB1       <--       <---------YAB1       --------->YAB1  --------->TOE2(3)                ------------>CBF    ----     <----------DOF2    <---------AHL20(2)--------->ARR11(3)         --------->ANAC58         ------- ---ZAT18 <---------YAB1<---------YAB1 --------->AHL20(2)            --------->ANAC58         ------- --------DOF2<---------YAB1<---------YAB1 <---------ARR11(3)         --------->ANAC46 <------------CBF   ctttaaactttgattattatccaatttttattaaaatataataaaatctcaaagccatgacccattccttcactcaagtatcaatgtctattgtctataa  18525300                            *TSS    <---------MYB59       <---------ATHB12   <---------ANAC55(2)   ------>MYB46(1)   --------->ANAC55(2)   ------>MYB83                                          <---------DAG2 <-----------GT1       ------->GAMYB                             <---------ANAC46 -------ICU4           --------->AtMYB61  --------->PCF2         <---------ANAC58 ----->ICU4            <---------MYB59<----------DOF2            <---------ANAC58     ------->TEIL -->AHL20(2)          --------->MYB46(3)  ---------->ID1<----------DOF2   ---------->DOF2       <---- ---->TBP      <<<<<<<<<TBF1<------------CBF <---------ALFIN1 <----------DOF2  <----------DOF2 <-----   atattacataactcttcttcttcaaccaaacattgaaacactttgtcccactctctctctttctctttcttgtaccaaaagctttttgaatctccaagat  18525400                                             <---------ICU4                                  <---------GLK1(1)                                  --------->GLK1(1)                                 <---------ARR11(3)      --------->ICU4       --------->DAG2         ---------->DOF2 --------->TOE2(3)   --------->YAB1  <---------MYB46(3) -----YAB1  --------->YAB1   ---------->DOF2--------->ICU4<---------MYB46(3)---------->DOF2 ----ARR11(3)  --------->AHL20(2)--------->ARR11(3)      <---------ATHB12--------->ANAC46   tatagcaaaaccaaagataaaatactaacttaaaagatttctgaaaataatgagttgcaatggttgtcgagttctacgaaaaggttgcagtgagaattgc  18525500                                                     --------->DEAR3(1)                                                    <------NtERF2                                                ------>NtERF2                                               --------->ANAC58                                               --------->ANAC46                                               ==================================================bZIP_DOF                                               --------->ANAC58                                               --------->TGA1a                     <---------ANAC46                                               --------->O2                     --------->ALFIN1                                               <---------O2                     ----------->HVH21                                               --------->bZIP60(2)             <---------SPL7                                             <---------ATERF1(1)              <---------ATERF1(1)                                    <---------At4g35610                       <---------ANAC58                                    --------->At4g35610                       <---------ANAC58                              --------->At4g35610  ------>NtERF2             <---------DEAR3(1)                              ----------->RAV1(2) <---------ALFIN1   <---------ARR11(3)                              <---------At4g35610 --------->DEAR3(1) --------->ARR11(3)             < =============================HOX2a_HOX2a    <---------ALFIN1      ----------->ARR10  <----------DOF2 ------>ZmHOX2a(1)     ------>ZmHOX2a(2)  --------->ANAC46   ---------->ID1 ------>NtERF2      <-----   atcctccgtccatgtattcaatggatcgaatcacctgaagctcaaggccacgccaccgtcttcgtcgctaagttcttcggccgtgccggtttaatgtctt  18525600               <---------GLK1(2)               <---------ARR14(2)               --------->ARR14(2)                                ------>ZmHOX2a(2)             --------->LBD16                                    <------ZmHOX2a(2)           <---------LBD16                                     --------->ARR14(2)          --------->MYB52(1)                                   <---------ARR11(3)        <---------SPL1(2)                                      <---------AGP1        <---------SPL7                                         --------->ARR11(3)       --------->DEAR3(1)                                      <---------ARR14(2)     --------->LBD16                                           --------->AGP1     ------>NtERF2                                            <---------CCA1(2)    --------->ANAC46                                         ----------->ARR10    --------->DEAR3(1)                                    =============HOX2a_HOX2a   <---------LBD16--------->TOE2(3)                       <----------DOF2                     <------ ---------At4g35610                                       ------>ZmHOX2a(1)      ---------->ID1 -----DOF2--------->SPL7                                  ==============HOX2a_HOX2a    <---------AtMYB61   tcatctccgccgtaccggaatctcaatgccctggtacttaaaaacaaaaacctctcggtcctttagatcttcgtctaaacgttgtcgttttggtttctga  18525700                                                                                     --------->DEAR3(1)                                                                                    --------->ATERF1(1)                                                                                    --------->RAP2.3(1)                                                                                    <------NtERF2                                                                                   ------>NtERF2                                                                                   <---------ATERF1(1)                                                                                  <---------ARR14(2)                                                                             --------->MYB52(1)                                                                            <---------ZAT14                                                                            <---------WRKY12                                                                            --------->ZAT14                                                                            <---------WRKY38(1)                    <---------At5g28300                                    ----------->HVH21                   <-----------GT1                 <---------ANAC58      --------->LBD16           --               <----------DOF2                     <---------ANAC58    <---------LBD16          <----           <------MYB46(1)                        <---------HSFC1(2) <---------ARR14(2)      <-------           <------MYB83                           --------->HSFC1(2) --------->ARR14(2)<------NtERF2       <---------ARR14(2)            <----------DOF2                 --------->GLK1(2)<-----------HVH21       --------->ARR14(2)<----------DOF2         ------->TEIL    --------->At5g28300--------->DEAR3(2) ---YAB1----------------------->TaNAC69(2)    --------->ANAC46  ----------->GT1   --------->ARR14(2)   tggtaagggtatttggtctttttacagctttgtttcagtctttgctatacgaagcttgtgggagaactgtgaatccggtgaacggagccgtcggattgtt  18525800  Previous    Next  AGI:  At3g49940.1    Description:  LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38). Identical to LOB domain-containing protein 38 (LBD38) [Arabidopsis Thaliana] (GB:Q9SN23;GB:Q8LDW4); similar to LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37) [Arabidopsis thaliana] (TAIR:AT5G67420.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96782.1); contains InterPro domain Lateral organ boundaries, LOB (InterPro:IPR004883) Range:  from: 18525328    to: 18526460    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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