Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 --------->TOE1(3)                                                               --------------->AGL15                                                               <---------------AGL15                    <---------ARR14(2)                         <---------MYB59                    <---------ARR11(3)                         --------->TOE2(3)                    --------->ARR14(2)                        <-----------------AGL3                    --------->ARR11(3)    <---------YAB1      ----------------->AGL3           --------->ANAC58             --------->ANAC55(2)   ----------------->AGL2           --------->ANAC58             <---------ANAC55(2)  ------->TEIL        --------->ANAC58           --------->ANAC46       <------ZmHOX2a(1)      >>>>>>>>>TBF1           --------->ANAC58         --------->MYB46(3)     <---------TOE2(3)     >>>>>>>>>TBF1  --------------->AtSPL8 ---ZmHOX2a(2)    ----------->ARR10    <-------TEIL>>>>>>>>>TBF1     <---------------AtSPL8   tcaaatctataaccagcaagaagatactactcttgaggaaatacatgatagaagaagaagaagaacctaaaatagtacttgttaagcaaaacatttgcta  18518300                                                                                                    <                                                                                                    -                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                                 <---                                                                                                 ----                                                                                                 ----                           <---------ZAT14                          --------->DAG2            -------                    <---------ARR11(3)                             ---------->DOF2         --------->TOE1(2)     <---------YAB1 --------->GLK1(2)            <---------YAB1<---------YAB1          <---------GLK1(2)  <-------TEIL      --------->ARR11(3)    --------->ANAC46 <---------GLK1(2)         ----------->ARR10   caaattcatcaatgtgaaacaaaatctactagactgcgaagaacacatcatatgattcacagattataaaaaagctagaaacgagattagatacttacga  18518400                                                                         --------->DAG2  <------NtERF2                                                         ---------->DOF2 --------->LBD16                                                   --------->ZAT6 ---------ANAC46                                               ------>ZmHOX2a(2) -------->DEAR3(1)                                            <------ZmHOX2a(2) --------LBD16      <---------ARR11(3)                       --------->ARR14(2) ------->ATERF1(1)  --------->ARR14(2)                       <---------ARR11(3) -----NtERF2        --------->ARR11(3)                       --------->AGP1 --->NtERF2<---------MYB52(1)                                --------->ARR11(3) ------DEAR3(1)     <---------ARR14(2)                       <---------AGP1 <----------ID1         -- ----->DEAR3(1)   ----------->ARR10       <---------ZAT6     <---------ARR14(2)                    -- ----->ANAC46--------->MYB52(2)     ------>ZmHOX2a(2)    <---------At4g35610----------->GT1   ------- -->ANAC46<-----------HVH21     <---------YAB1          ----------->RAV1(1)----------->GT1    <------   cgccggagacactgttagtggagatactgaatttctgatcggtactgtaatctctcgtcaacagatctaacacaaaaagggaaaaacacaaaattgagct  18518500            <---------ARR14(2)            --------->ARR14(2)               <---------ICU4           <------ZmHOX2a(1)                 --------->YAB1 ------->ANAC58       --------->YAB1        --------->ICU4                     ---------->DOF2 ------->ANAC58      <---------ATHB12       <---------ATHB12        <---------HSFB2a(2) -->At4g35610      --------->WOX13(1) --------->AtMYB61         --------->REM1(1) ---At4g35610 <-------TEIL        <---------ETT(2) --------->TOE2(3)--------->HSFB2a(2)          ----   tacgaaaacaccaggattcatcaatcacactctctctcgacctccaatgatcacattaatacaactacatcgagaaaactcgaaagttgacatcaaaact  18518600                                                                   --------->LBD16                                                                   ----------->HVH21                                                                  --------->LBD16                                                                  <---------HSFB2a(2)                                                       <------NtERF2                                                      <---------RAP2.3(1)                                                     <---------DEAR3(1)                                                     --------->ETT(1)                                                     <---------DEAR4(1)                                                     <---------DREB2C(2)                                                     <---------RAP2.3(3)                                                     <---------At1g77200 <---------MYB52(1)                                 <----------DOF2    --------->DDF1--------->HSFB2a(2)                                <---------DAG2     <-----------HVH21 <---------ARR14(2)                           --------->YAB1         <-----------RAV1(1)--------->ARR14(2)   <---------At4g35610    <---------YAB1 --------->ARR14(2)      <---------LBD16             --------   --------->At4g35610<---------GLK1(2)  <---------ARR14(2)<---------ARR14(2)          ============== ----->MYB52(1)     ----------->ARR10   <---------CCA1(2)  --------->ARR14(2)          ------>ZmHOX2a(2)   aatggagatgaagaaggaagggaagattatcatacctttcgcatattttccgatgtcggcgaatagtcccggacccttactcatggtgatcggagaattt  18518700                                                                                                    x                                                                                                  <--                                                                                                  <--                                                                                                  <--                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx                                                                                --------->ALFIN1 xxxx                                                                              <---------ANAC58   xxxx                                                                              <---------ANAC58   xxxx                                                                              <---------TGA1a    xxxx                                                                              =======================                               ----------->GT1                                <---------ANAC46   xxxx                             <------NtERF2                                    =======================bZIP_DOF                           <---------bZIP60(1)                                --------->TGA1a    xxxx                           <---------ATERF1(2)                               ------->TEIL        xxxx                           --------->ATERF1(2)                             =============MYC_MYB  xxxx                           --------->bZIP60(1)                             ------->GAMYB         xxxx                           <---------RAP2.6(2)                            --------->MYB46(3)     xxxx                  <---------ZAT6                                    --------->YAB1               xxxx             ------>MYB83 --------->RAP2.6(3)                       --------->ATHB12             *TSS             ------>MYB46(1)------>NtERF2           <--------ATHB1  <--------ATHB1               xxxx           --------------->AGL15                    --------->YAB1  <---------ICU4               xxxx           <---------------AGL15                   <---------ATHB12<---------ATHB12              xxxx          ----------------->AGL3     <------------CBF  ----------->GT1  --------->MYB52(1)  ---------      <------ZmHOX2a(1) ----------->HVH21      ------------>CBF    --------->ICU4         =========== ->GLK1(2)----------------->AGL2--------->At5g28300<---------ATHB51<---------YAB1         ---------->DOF2 ============HOX2a_HOX2a----------->TGA1     --------->ANAC46  ------------>CBF ----------->GT1  xxxx   gagagagaggaaaccaaatagagatagtgacggcagtaaaattgtccaagtcaataatagttaaaatcaatgattaacggacgtgtaacaacaaaaggtt  18518800                   <-----------TGA1                  --------->O2                  --------->TGA1a                  --------->ANAC58                  --------->ANAC55(2)                  <---------ANAC55(2)                  --------->ANAC58                  --------->ANAC55(1)                  <---------TGA1a                  --------->bZIP60(2)                  --------->bZIP60(1)                  <---------bZIP60(1)           =================MYC_MYB           <-------GAMYB          <---------MYB46(3)          <------MYB46(1)     ----------------------->TaNAC69(2)   <---------ANAC46<-----------HVH21   <---------REM1(1) xxxxxxxxxxxxxx>smallRNA(si3) -------ANAC58    --------->ANAC46 -------ANAC58    <---------O2 -------ANAC46   <-----------STF1 xxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                      --------->LBD16 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   <---------LBD16 xxxxxxxxxxxxxxx>smallRNA(se3)                        <---------LBD16 xxxxxxxxxxxxxxxx>smallRNA(se3)                       xxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxx>smallRNA(se3)                         xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxx>smallRNA(le3)                           xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxx>smallRNA(fl3)                     xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxx>smallRNA(i)                         xxxxxxxxxxxxxxxx>smallRNA(i) ==================MYC_MYB                        xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxx>smallRNA(fl3)                  xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxx>smallRNA(le3)          <---------LBD16 xxxxxxxxxxxxx>smallRNA(fl3)            <---------GLK1(1) xxxxxxxxxxxxx>smallRNA(le3)           <---------ARR14(3)     --------->ANAC58 xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->ARR11(3)     --------->ANAC58                <------ xxxxxxxxxxxx>smallRNA(s)              <---------ARR11(3)   <---------ATERF1(1)   <---------AHL20(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   --------->ARR14(3)------>NtERF2           --------->AHL20(2) xxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <---------AHL20(1) xxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxx>smallRNA(le3)              <---------AHL20(2) >DAG2    <------MYB83            xxxxxxxxxxxxxxxx>smallRNA(fl3)             <---------AHL20(2) ===========================bZIP_DOF xxxxxxxxxxxxxxxx>smallRNA(le3)          --------->AHL20(2)     - xxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      <----------DOF2  <---------   tcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctccggttcgaacccgggcgaagccatttcttcttttaattttttttttttacttt  18518900                                                                                                    <                                                                                                    -                                                                                                    <                                                                            ------->MYC3           <-                                     --------->At4g35610                    <-------MYC3           <-                                     <---------At4g35610                 --------->MYB52(1)        <-                                    <---------TOE1(3)                   ------->GAMYB              --                              --------->ZAT18    <---------AHL20(2)    --------->MYB46(3)        <---                        >>>>>>>GRF7 <---------TOE2(3)                  <---------MYB52(2) ----------- ----DOF2              <-----------RAV1(2)       --------->AHL20(2)    <---------MYB55(2)<----------DOF2 --------->DOF2      <-----------HVH21       --------->AHL20(2)     <----------ID1    <-----------GT1 --GT1     <---------YAB1 <------ZmHOX2a(1)--------->TOE2(3)   <----------DOF2----------->GT1   -----   gtaaaagaacattacgcttggaatgtcaggagtccattaagcttacattatttaaatcgataagtctttaacaacaaacgtggttatttcactttgtact  18519000  <---------YAB1 ---------ICU4 ------->HAHB4 ---------AHL20(2) --------ATHB12                             <--------P                     --------->AtLEC2 --------YAB1                               <---------MYB52(1)         --------->HSFB2a(2) --------->LBD16 --------ATHB51                          <---------TOE2(3)          --------->ARR11(3)     --------->At5g28300 ------->ICU4                            <---------TOE1(3) --------->ARR14(2)       <---------YAB1 <- ------ICU4                   <----------DOF2 --------->MYB52(2)    <---------ARR11(3)    <---------ANAC46 ---->AtSPL8        <-----------GT1      <---------YAB1    <---------ARR14(2)   <---------GLK1(2)  <- ---->ICU4      <---------MYB52(1)   <---------ANAC46<---------TOE2(3) <---------HSFB2a(2)-----------   aattattcttgattatgcgttatttccattttctttgtgtcttatggttagttttaatgtggatttggaagttctcgatgcagattatgaagccgtgaaa  18519100                            <------NtERF2                            --------->MYB46(3)                           --------->ANAC58                           --------->ANAC58                           ------>NtERF2                        <---------ZAT18         <---------WOX13(1)    <---------WOX13(1)           --               <---------WOX13(1)  ---------->DOF2    <---------ICU4--------->ATHB12             <---            --------->ICU4 --------->ANAC46   --------->ATHB12     --------->ICU4               ----- --------YAB1--------->ATHB12 ----------->RAV1(1)    --------->AHL20(2) --------->ATHB12      <------ --------AHL20(2)       --------->ZAT18      <---------YAB1        <---------YAB1            -------- >GT1       <---------YAB1--------->RAP2.3(3)--------->ICU4      --------->YAB1            --------->ICU4   tattatttgatgagatgattgaattgtgcccccaacaaaaagatgagatgattgaataaatactgaagcatgattgatggaatagtttgtgtattcatta  18519200  Previous    Next  AGI:  At3g49920.1    Description:  porin, putative. similar to porin, putative [Arabidopsis thaliana] (TAIR:AT5G67500.1); similar to porin-like protein [Brassica napus] (GB:AAW22622.1); contains InterPro domain Porin, eukaryotic type; (InterPro:IPR001925) Range:  from: 18516821    to: 18518684    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g49925.1    Description:  pre-tRNA. tRNA-Val (anticodon: AAC) Range:  from: 18518797    to: 18518870    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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