Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 ---------->DOF2                                       --------->AHL20(2)                                       <---------AHL20(2)                                   <---------AHL20(2)                                   --------->AHL20(2)      ----------->GT1             <---------AHL20(2)                  <---------AHL20(2) ---------->HVH21              --------->AHL20(2)                     --------->AHL20(2)        ----- -------bZIP60(2)              <---------AHL20(2)                  <---------ICU4               <---- -------bZIP60(1)             <---------AHL20(2)                --------->AHL20(2)              <---- ------>bZIP60(1)             <---------AHL20(1)                --------->YAB1                  ----- -------O2                    --------->AHL20(1)             --------->YAB1                  -------- ----->HVH21                  --------->AHL20(2) <---------TOE2(3)--------->ICU4     <----------DOF2   acatgacattgtaaataagttcaaatacaaaatttatttatttaaacaaaaaaggtttagtaagaataatatttatttaacaaaaaactttgttttaaaa  18506800                                                              <---------YAB1                                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                         <---------AHL20(2)                                                         --------->AHL20(2)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                <------MYB46(1)--------->ATHB12                                                <---------ANAC58                                                <---------ANAC58                                                <------MYB83  <---------AHL20(2)                                                <---------ANAC46                                               --------->MYB111(1)                    --------->AHL20(2)                                               <---------MYB46(3)            <---------WOX13(1)                                               --------->MYB46(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ---->ARR11(3)                                 --------->MYB111(2) --------->YAB1     <---------AHL20(2) -----AHL20(2)                      --------->ATHB12    --------->AHL20(2) --------->ATHB12 -----AHL20(1)               <---------TOE2(3) <---------AtMYB61xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) < ---->AHL20(1)    <---------YAB1  <---------WOX13(1) ----------->GT1      <---------YAB1            - ->AHL20(2) <---------YAB1<---------AHL20(2)   --------->MYB55(2)<---------WOX13(1)  --------->AHL20(2)   tattgttaacaaatatgtttatgctaattttaagggattgatttgaagtttggtgggattaaatttgattgataatgtgattgacaatttaaatcaaaaa  18506900               --------->AHL20(1)               <---------AHL20(2)              <---------ICU4              --------->ATHB51              --------->AHL20(2)              <---------AHL20(2)             --------->ICU4             XXXXXXXXXXXXXXXXXXXX>MIR830          <---------AHL20(2)          --------->AHL20(1)          --------->AHL20(2)                                   --------->TOE2(3)           <---------ANAC58         --------->AHL20(2)                                <---------AHL20(2)         xxxxxxxxxxxxxxx      <---------AHL20(2)                        --------->AHL20(1)           --------->AHL20(2)      --------->AHL20(2)                        <---------AHL20(1)           <---------AHL20(2)     --------->AHL20(1)         <---------AHL20(2)        <---------AHL20(2)--------->AHL20(1)     <---------AHL20(1)        --------->AHL20(2)         --------->AHL20(2)<---------AHL20(2)     --------->AHL20(2)      --------->ARR11(3) --------->AHL20(2)          --------->AHL20(2)     <---------AHL20(2)      <---------ARR11(3) <---------AHL20(2)          <---------AHL20(1) ---------AHL20(2)       ---------->DOF2       --------->AHL20(2)     <---------AHL20(2)   <---------ANAC58 -------->AHL20(2) ----------->GT1  --------->YAB1  ----------->GT1  --------->AHL20(2) xxxxxxxxxxxxx   ttttaaataaaattaattattttgaaaaaaagatttaatgctaatagcattaaattgtaaataaatctaaatttaaaatttatttgctaaaatgcctgca  18507000                                                                                                   <-                                                                                       --------->ANAC58                                                                                       --------->ANAC46              <---------WRKY12                                                         --------->ANAC58              <---------WRKY38(1)                      <---------ANAC46             <---------AHL20(2)             --------->WRKY18(1)                      ---------->ID1            <---------------AGL15    ------->TEIL                                  <---------ANAC58              --------------->AGL15 ----------->GT1                                  <---------ANAC58             <---------YAB1   <---- xxxxxxx>smallRNA(se3)                          <-----------GT1              <-----------GT1    <---- xxxxxxxxxx>smallRNA(se3)                    <----------DOF2              <---------MYB46(3)---------   aaaatgtatatataggtcaacaaaatataagtgttttcatcgaattacttttacttgtcgtctaattttctctcatttgttactattttaagccattttt  18507100                                                                                  --------->HSFB2a(2)                                                                          <---------AHL20(2)                                                                          <---------AHL20(1)                                                                       --------->TOE2(3)                                                                      -------->ATHB1                                                                      <---------ICU4                                                                      --------->ATHB12           ----                                                                      <--------HAHB4            -----                                                                      --------->YAB1           <-----             <-------TEIL                                            <---------ATHB12         -------         <---------------AtSPL3                                      --------->ICU4    --------->ANAC58         <---------------AtSPL8 ------->TEIL                         <---------YAB1    --------->ANAC58  ---------->DOF2            <---------YAB1                      ------------>CBF <---------HSFB2a(2) --------WOX13(1)           <---------TOE2(3)              --------->MYB52(1)  <-----------GT1<------ -----YAB1----------->GT1  --------->YAB1             --------->AHL20(1) --------->AHL20(2)   ------- -----AHL20(2)          --------->TOE2(3)          ----------->GT1 --------->WOX13(1)  <----------ID1 >ICU4   --------->ALFIN1 --------->ICU4--------->ANAC46   <-----------GT1--------->AHL20(2)  <------   aattgaaagaagtggtacatatatagcattaatgaatgctatactcaaggagaaagtatattaacgggacaatcattaaatttaccagaacgacaagatc  18507200                                                                             --------->ANAC58                                                                             ========================                                                                             <---------TGA1a                                                                             ========================       --------->AHL20(2)                                                    --------->O2  <---------AHL20(1)                                                         <---------O2  <---------AHL20(2)                                                         --------->ANAC58       -  --------->AHL20(1)                                                         --------->TGA1a      <--  --------->AHL20(2)                                                        <---------TOE1(2)   ----- <---------ATHB12                                                         <---------SPL7     -------- -------->CBF                     *TSS                                  --------->PCF2       <------- ->ZmHOX2a(2)                  <---------At4g35610                     <-----------HVH21  --------->YAB1 -ZmHOX2a(2)                   --------->At4g35610                <----------DOF2         <---------ICU4 -->ARR14(2)                 <-----------RAV1(2)  --------->WOX13(1) <---------AtMYB61 --------->WOX13(1) ---ARR11(3)              ------>MYB46(1)       <---------YAB1    =====================bZIP_DOF <---- -->ARR11(3)              ------>MYB83    ---------->DOF2 <-----------HVH21<---------ALFIN1 <-------- ---ARR14(2)            --------->AtMYB61 =============================================bZIP_DOF<-----   ccaataaaatgaaataaaaccaaaaaccaactcagatgagtaaacaaagtatcattcatcggtctcgtcttttggtcgcacgtctgaatccatcatcatc  18507300                             ------>ZmHOX2a(2)                             <---------HSFC1(2)                             --------->HSFC1(2)                            <------ZmHOX2a(2)                           <---------ARR14(2)      ------>MYB46(1)                               ----                           --------->AGP1        --------->DEAR3(1)                              <---                           <---------GLK1(2)     <---------MYB55(2)                            <-----    <---------ARR11(3)     <---------ARR11(3)    <---------MYB46(2)                         <--------    --------->ARR11(3)     --------->ARR11(3)    --------->MYB46(3)                      <---------ANAC58 ==========bZIP_DOF  ----------->HVH21           --------->DEAR4(1)                      <---------ANAC58 ==========bZIP_DOF <-----------HVH21            ----------->HVH21                       ----------->GT1 --------->DOF2     --------->LBD16         --------->AtMYB61                            <---------ANAC55(2) -------YAB1       --------->ANAC55(2)   ------>MYB46(1)                                 <---------ANAC46 ---->YAB1         --------->O2          ------>MYB83                              <---------TOE1(2) ->YAB1            <---------O2------>ZmHOX2a(1)--------->DEAR3(2)                ------>ZmHOX2a(1) --ICU4            <---------ANAC55(2) --------->AtMYB61    <----------DOF2       --------->LBD16<--- -----ICU4         --------->ANAC46    <---------MYB59    ---------->ID1         <---------LBD16 <--- -YAB1            <---------LBD16   <-----------GT1------>MYB83                 ----------->RAV1(2) ----YAB1  <----------DOF2 --------->ARR14(2) --------->MYB52(1)     --------->LBD16     --------->ANAC55(2)   atcaaagacctctctttgttcccgtgacagatccttcttaaccaaacctcaccgacccttgtctttatttccccaattctactcctgggtttcgtaatta  18507400     <---------ZAT2     --------->ZAT2    --------->LBD16    <---------TOE2(2)    <---------TOE1(2)   <-----------RAV1(2) ----->ANAC55(2)             --------->ARR14(2)                                               <------ ------ANAC55(2)             <---------ARR14(2)                                            <---------ARR11(3) ------GT1                  <---------GLK1(2)                                              --------->ARR11(3) -ICU4  <-------TEIL    --------->LBD16                                                  <---------AtMYB61 ------ANAC58         <---------LBD16                                                    --------->MYB59 ------ANAC58 <----------DOF2--------->GLK1(2)        <----------DOF2             ---------->DOF2   cgttcccaggttcgagctttcttctccggagaatctgaaatcgaacaatttagtgtctttttctcagacattgtttacttctgagaaagcttaggtcttt  18507500                                                      --------->LBD16                                                     --------->LBD16                                                   ------>ZmHOX2a(2)                                                  <------ZmHOX2a(2)                                    --------------->AGL15                                    <---------------AGL15                                    <----------DOF2===========================HOX2a_HOX2a                          <---------ARR14(2)      ============================HOX2a_HOX2a                         <---------ZAT2          --------->ARR14(2)                         <---------At4g35610     --------->ARR11(3)                         --------->ZAT2   <---------TOE1(3)                         --------->At4g35610     <---------ARR14(2)                   <---------HSFC1(2)     <---------TOE2(3)              <<<<<<<<<<AtTINY2    <-----------------AGL1              --------->ETT(1)     <-----------------AGL3            <-----------HVH21 ------>NtERF2      <---------ARR11(3)         <---------ANAC55(2)  --------->LBD16  ----------->ARR10        <---------TOE1(2)   <---------YAB1  --------->HSFC1(2)    <-----------RAV1(2)           ------>ZmHOX2a(1)     <------- ----DOF2--------->ANAC55(2)<---------LBD16  <--------P      <-----------GT1        <---------YAB1   agactctcattacatgtcggaagtttcagctccggcttctttttcaggtaagatcccgaggtttttctgtctcctagttttctgtgtttattgaactttt  18507600                                       <---------ANAC58                     --------->At4g35610              --------->ARR11(3)                     <---------At4g35610              <---------AGP1          --------->LBD16              <---------ANAC58 ------>ZmHOX2a(2)          --------->At4g35610  <---------TOE2(3)      --------->ARR14(2)              <--------------    <---------At4g35610    <----------DOF2    <----------DOF2                         =============== ---DOF2  <---------At4g35610  <---------TOE1(3)      <---------ARR14(2)      <---------ATHB12<------   gtgttcatcttccgctggaaattagctgtctttagggtttagcttgtgcttatttggatctggtatcgaaatttgtgctaatcaacttgctaaaattgac  18507700  Previous    Next  AGI:  At3g49880.1    Description:  glycosyl hydrolase family protein 43. similar to glycosyl hydrolase family protein 43 [Arabidopsis thaliana] (TAIR:AT5G67540.2); similar to glycosyl hydrolase family protein 43 [Arabidopsis thaliana] (TAIR:AT5G67540.1); similar to hypothetical protein OsI_004549 [Oryza sativa (indica cultivar-group)] (GB:EAY76702.1); similar to Os01g0879400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044987.1); similar to Os12g0406100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066630.1); contains InterPro domain Glycoside hydrolase, family 43; (InterPro:IPR006710) Range:  from: 18507234    to: 18509698    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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