Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                              --------------->AGL15                                                                            <---------------AGL15                                                                           <-----------------AG                                                              <---------MYB52(1)                                                      <---------MYB59      <-----------------AGL1                           <---------YAB1            ----------->RAV1(2)   ----------------->AGL2                          <---------TOE2(2)          <---------ANAC55(2)--------->At4g35610                          <---------TOE1(2)    <------ZmHOX2a(2)       --------->ANAC58         ----- --------ZAT2      --------->ZAT6      <-----------HVH21 <---------GLK1(2) <-----------------AGL3 ------->ZAT2      <---------ALFIN1  --------->LBD16 --------->ANAC55(2)<---------ZAT2          ----- >ARR14(2)        --------->ZAT14  <---------LBD16   ----------------->AGL1----------------->AGL3 <-- -GLK1(2)  --------->MYB46(3)    -------->P  --------->At4g35610       --------->ANAC58--------->ZAT6   cagcatcgccacaacgactcaacactcgtatgatcaacccgggtcgcagatcaatacctgattcgttaagagcaagctccaattttggaactctagaatg  18458400                                  <---------LBD16                   <---------ARR11(3)                   --------->ARR11(3)     --------->LBD16     --------->HSFB2a(2)    <---------ANAC55(2)  <---------HSFB2a(2)                                         <----------DOF2   <---------LBD16 <-----------ARR10--------->LBD16                           ------->GAMYB <---------ARR14(2)--------->ARR14(2)                                       ------>MYB46(1) --------->ARR14(2)<---------ARR14(2)    <---------ARR14(2)                 -------->P ---->YAB1        <---------CCA1(2)--------->DEAR3(1)                       ------>MYB83       <----- ------>GT1--------->GLK1(2)   <---------ZAT14                           --------->MYB46(3)   <------ -------YAB1  ----------->GT1 <-----------HVH21            <---------LBD16--------->AtMYB61  <-------   gtgattccgcaaaattctgtaaatcttctcgacttcaccggcgaattcatcttcatgcttctctggacaaactaaaccaaccccattctttctctctgtt  18458500                                                                      <---------ANAC58                                                                      <---------ANAC58            <---------MYB52(1)                                        <---------ANAC46    --------->ANAC58                                            <---------GLK1(2)    --------->ANAC58                                         <---------HSFB2a(2)    --------->ANAC46                                  <------ZmHOX2a(2) --------->TOE1(2)                      <----------DOF2      --------->HSFC1(1) ----MYB52(1)                          <---------DAG2--------->ARR11(3)                     <-------- -GAMYB    --------->TOE2(3)          <---------HSFB2a(1)    --------->HSFB2a(2)         <---------At4g35610 ----RAV1(1)<---------YAB1            --------->HSFB2a(1)    <---------HSFC1(1)  ----------->GT1   gattctacgaaatcgttattgagaactcttgaaatatggaaccttttacaaatgagatcaattctagaatttgcttgagaagatggttttttgctgatga  18458600                                  --------->ANAC46                                  --------->TGA1a                           <---------CCA1(2)                          ------->TEIL                  <-----------ARR10                       <---------ARR14(2)                  --------->ARR14(2)                    <----------DOF2                  <---------ARR14(2)--------->ZAT14    <---------ANAC46                  --------->GLK1(2) <---------ZAT14   <------NtERF2  <------ZmHOX2a(2)    --------->ANAC46              ------>NtERF2 --------->ARR11(3)    --------->ANAC58             <---------DEAR3(1) <---------ARR11(3)    --------->ANAC58           --------->MYB52(1) ---------->DOF2 <-----------GT1 -At4g35610      <---------GLK1(2)=================================bZIP_DOF      <----------DOF2    -   gaagatcaacaatggtagagaatctacgcatctctcacttcacactctaaaacgacggcgttttcgtcttataaagtcttctccttttctctgttttgca  18458700                                       <----------DOF2                         --------->TOE2(3)             ---------->DOF2---------->DOF2                                ---------->DOF2 --------->DOF2          --------->TOE1(3)  --------->ZAT14       <---------WOX13(1)   aatatagcagaaaactaaagccctaaacctaaaagagacaactttcttcactcacagagctatagatgactgatgagaaaagctctatgtttaacagaga  18458800                                                                                               <-----                                                                                               <-----                                                                                               ------                                      --------->AHL20(2)                          <---------ARR14(2)                            <-------MYC3                                          --------->ARR14(2)                            ------->MYC3            --------->MYB52(1)            <---------GLK1(2)                           <---------O2           <---------MYB52(2)   --------->LBD16       --------                           --------->ANAC46  --------->LBD16           ------>NtERF2 --------->ANAC58                           --------->O2<---------AHL20(2)             <---------ANAC46       --------    --------->ANAC46     <---------ALFIN1  <---------LBD16           <---------LBD16 --------->ANAC58   gtttatcagccatagcagaaaactctaccacgttgctcaatttaaaccggagactaacgggtctcactcgttccggcgagaacagaaacgctctcaagct  18458900                                                                                --------->LBD16                                                                            <---------ALFIN1                                                                            --------->DEAR3(1)                                                                           --------->At4g35610                                                                           --------->ATERF1(1)      <   --------->DEAR3(1)                                                      <---------At4g35610    <-- ------ARR10                                                       <---------ZAT2                <--- ----ARR11(3)                                         --------->MYB52(2)   <---------ZAT2  <--------- --->ARR11(3)                                       <---------MYB52(1)    <---------ATERF1(1)<------- ->ANAC58     <-------GAMYB              --------->ZAT14           <---------At4g35610   <---------YAB1 ->ANAC58  <---------At5g28300           <---------ZAT14           --------->ZAT2       --------->ARR11(3)   cttcgccgatgttcaccgttgcacaactctgagaccagaccagtacagtgtctcgttagctattactacagctaggcacctccgtgatactatctttggt  18459000                                                          --------->ANAC58                                                          --------->ANAC58                                                       --------->ARR14(2)                                               <---------TGA1a                                               ============================bZIP_DOF                                               <---------O2      --------->MYB52(2)                       --------->ANAC55(2)     <-------TEIL                              --------->TGA1a -----------RAV1(2)                            ============================bZIP_DOF ---------HVH21                                --------->O2 ------MYB46(3)              ============================bZIP_DOF     <----------DOF2            <--- -DOF2--------->ATHB12       <----------DOF2  <---------TOE1(2) <----------DOF2                 <---- --AtMYB61        --------->ARR14(2) <-----------HVH21 <---------ARR14(2)             <---------ZAT18   ggtcaggttcattgctatgcgattcgctctggtttattgtgtcactctcacgtttccaatacgcttctttcgctatatgagagattagggaacttagctt  18459100                                                         <---------YAB1      <------MYB46(1)                                                    --------->HSFB2a(1)      <------MYB83     >>>>>>>>>TBF1           ----------->RAV1(2)    <---------HSFC1(2)       ----------->GT1 ------ANAC46               ------->TEIL            --------->HSFC1(2)  <---------TOE1(3)          <- ---TEIL             <---------WOX13(1)         <---------DEAR3(1)      <---------TOE2(3)      <-----   cgttgaagaagaagttcgacgagattgatgaacctgatgtttattcatggacgacgcttctgagtgcaagttttaagcttggtgatatagagtatgcctt  18459200                                                                                 --------->ANAC55(2)                                                                                 <---------ANAC55(2)                                                            <--------P           --------->ANAC46                                                          <---------MYB46(3)     --------->ANAC58                                                     <---------YAB1         <---------GLK1(1)                                                   --------->YAB1         <------MYB46(1)                                                   --------->ATHB12       <------MYB83    <---------ZAT6  --------->ALFIN1            <-----------RAV1(1)  <---------ICU4        <---------MYB46(3)<---------ZAT14 --------TOE2(3)         <---------At4g35610      <---------YAB1        --------->ALFIN1  --------->ALFIN1 -----DOF2--------->AHL20(2)  <---------REM1(1)   --------->ICU4---------->DOF2  --------->ANAC58   tgaggtgtttgataaaatgcctgagagagatgatgttgcgatttggaatgctatgattactggttgcaaagagagtgggtatcacgaaacgagtgttgag  18459300  Previous    Next  AGI:  At3g49730.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G65820.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71515.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24801.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 18453260    to: 18458631    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g49740.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G02010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24800.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71514.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 18458773    to: 18461079    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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