Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <----------DOF2       ------>ZmHOX2a(1) --------->YAB1      --------------->AGL15      <---------------AGL15     <-----------------AGL3     ----------------->AGL2                                                                ------>MYB46(1)     ----------------->AGL3      ----------->RAV1(1)                                       ------>MYB83   <-----------GT1      <-------TEIL                               --------->AHL20(2)  XXXXXXXXXXXXXX  <---------CCA1(2) <---------YAB1      --------->ANAC58    ------->MYC3          --------->ANAC46 -----AHL20(2)      <---------TOE2(3)   --------->ANAC58    <-------MYC3          --------->ANAC58 --->AHL20(2)      <-----------GT1 --------->ZAT6      <---------ATHB12           --------->ANAC58 --   atttgtatccttttttagaattaacattcatagaacaacactaagcaaaatgaacaaatcaacgtggaataaaacaccattctcaagcaaaccaaacaca  18452800                                                                   --------->ANAC55(1)                                                  ------->GAMYB    <---------ANAC55(2)         ------                                            --------->YAB1         --------->ANAC55(2)   <------ZmHOX2a(2)                                          ----------->RAV1(1)<---------MYB52(2)<---------ARR11(3)                                       <------ZmHOX2a(2)--------->ANAC46       --------->ARR11(3)                    <---------AHL20(1)--------->AGP1   <---------------------WRI1       <---------ARR11(3)  <----------ID1    <---------AHL20(2)--------->ARR14(2)--------->ANAC58 --------->TOE2(3)  --------- XXXXXX>MIR420<---------At4g35610<-----------GT1 --------->MYB46(3)--------->ANAC46     --------->ARR11(3) ------->GLK1(1)    --------->AHL20(2)<---------ARR14(2)--------->ANAC58 --------->TOE1(3)------>ZmHOX2a(2)   gaaatcgacaaaactaagctaattaattctccaattcacagatccaacataaccatcgacgaaacaaacacataaccttaaaatctattagatcccacaa  18452900             <---------ANAC58             <---------ANAC58         <----------DOF2                                                            --------->MYB52(1)        <---------ANAC58                                                    --------->At4g35610        <---------ANAC46                                                    <---------ZAT2       <-------TEIL                 <-----------GT1                         --------->ZAT2    --------->At4g35610         ------->TEIL                         --------->AtLEC2               -    --------->ZAT2           <---------ATHB12                        --------->ANAC46     <---------ETT(2)    <---------At4g35610  <---------TOE2(3)                        ------>ZmHOX2a(2) <---------ARR14(2) ----->RAV1(1)       --------->TOE2(3)            ----------------->AGL3    <---------At4g35610     < >ANAC46<---------ANAC58--------->YAB1  --------->ANAC46     <---------WOX13(1)     --------->ARR14(2)   caaattagctgcgtttcgttctacattaacaatgaatttcaccagaaacaaatccaattacagattgatccatgaaacagctcgcagaacggtagacgaa  18453000                                                                                                <----                                                                                                -----                                                                                                -----                                                                                              ------>ZmHOX2a(2)                                                                                             <------ZmHOX2a(2)                                                                                             --------                                                                                            <--------                                                                                            ---------                                                                                           --------->GLK1(1)                                                                                           <---------GLK1(1)                                                                                          -----------                                                                                       ------>ZmHOX2a(2)                                                                                      --------->CCA1(2)                                                                 <---------ICU4       <------ZmHOX2a(2)                                                                 --------->YAB1      <---------AGP1                                                                <---------ATHB51     --------->AGP1                                                            --------->AHL20(2)       <---------ARR14(2)                         >>>>>>>>>TBF1                 <------ZmHOX2a(2)             <---------ARR11(3)          --------->HSFB2a(2)                    --------->TOE2(3)                   --------->ARR14(2)          <---------HSFB2a(2)                  -------->P--------->WOX13(1)          --------->ARR11(3) -------->GLK1(1)     >>>>>>>>>TBF1            ------->TEIL<---------ATHB12     ------>ZmHOX2a(2) ---------GLK1(1) <------ZmHOX2a(1)        <---------ARR11(3)   --------->ICU4<---------AGP1---------   ggaaacccaaatcgagaagaggaagaagaagaaggaagaaatcgaaatctaccttggatcaatgaaataatgagggtttggatctaagatctgagatccg  18453100      <---------ZAT18          <---------ALFIN1 -----HSFB2a(2)           --------->bZIP60(2) ---->HSFB2a(2)           --------->ANAC58                --------->HSFB2a(1) ---->LBD16               --------->ANAC46                --------->HSFC1(2) ->CCA1(2)         --------->YAB1                         <---------HSFB2a(1) -ARR14(2)    <---------YAB1----------->HVH21        >>>>>>>>>TBF1         <---------YAB1 >AGP1--------->ZAT18   --------->ANAC46     --------->MYB52(1)    ----------->GT1 ------------>CBF >ARR10   <---------DAG2<---------ALFIN1 <-----------GT1  <---------HSFC1(2)<-----------GT1 >ARR14(2)<----------DOF2 --------->ANAC58   ---------->DOF2       <---------ZAT6  *TSS   agaaaatgagcactttatcaataaacacacctcacacttgaatttactaaaggaagaagaagcttcgaagtgttaatatcactgcttcaatatcgctatc  18453200                                                         --------->ANAC58                    ---------->DOF2                      <---------ANAC55(2)            ------>MYB83                                 --------->ANAC58            ------>MYB46(1)                         <----------DOF2                   <---------YAB1         ----------->RAV1(2)                   <---------ANAC58                    --------->AHL20(2)       <-----------GT1       --------->SPL7    <---------ANAC58                <-------TEIL--------->YAB1   <-----------TBP<---------REM1(2)         ----------->HVH21           <----------DOF2 --------->WOX13(1)   tacttatttatacctgcctctacaaagcgcgtatggctacgagtctatgacgcgctgttacgaaaacgacagcgttttaagtccatttattaatcagaat  18453300                                                      --------->ZAT14                                                      <---------ZAT14                                                   ------->TEIL               <---------------AtSPL8               <---------RAP2.6(3)                <---------ALFIN1          ---------->DOF2   ------->GAMYB                                --------->ANAC46 --------->LBD16  <---------MYB111(2)                           --------->ANAC58<---------ANAC46  <---------MYB55(2)          <-------TEIL      --------->ANAC55(2)     <---------------AGL15  <------------MYB.PH3(2)  --------->ANAC58--------->ANAC46     <---------ANAC58  <---------MYB52(2)      --------------->AtSPL3--------->ANAC58<---------ANAC55(1)  --------->MYB46(3) <-----------GT1       --------->ANAC58     <---------ANAC55(2)          -------- ------>MYB46(1)<---------MYB52(1)         --------->ANAC58     <---------ANAC58          --------->At4g35610 ------>MYB83---------->ID1--------->ANAC58<----------ID1       --------->ANAC55(2)    ---------->DOF2   accaacaaacttcttgccgttttttacacacgtacaagtttcaaaacgacacgcacttctctgattccgtggtacaaaaaaaggaacatagaagcagaag  18453400                                                                                  <---------ATERF1(1)                                                                           <---------ANAC46                                                                           <---------TOE2(1)                                                                           <---------TOE1(1)                                                 <---------KAN4(2)      <---------MYB52(1)                                          --------->MYB52(1)          <---------ICU4      --------->ARR14(2)                                         ----------->HVH21         <---------ICU4 <------NtERF2              <---------MYB52(1)        ------>ZmHOX2a(2)         <---------YAB1--------->ALFIN1            <---------ANAC58            ===========================HOX2a_HOX2a<---------bZIP60(2) ->At4g35610<---------ANAC58      --------->TOE2(3)         ------>ZmHOX2a(1) --------->ZAT2   acaaaaccattgtttcgtttcttcttatattctcaacgttgatctaacgggattaatctctcctcttcatcatcgttacgaggtggcctccatttacgct  18453500                                                                                              -------                                                                                            <--------            <----------DOF2                                                              -------->P     <---------ZAT18                                                                     ------>MYB46(1)     --------->ZAT18<---------ZAT14                                  <-------TEIL        ------>MYB83   --------->At4g35610                                              --------->CCA1(2)  --------->AtMYB61   <---------At4g35610     <------NtERF2      <----------DOF2      --------->ARR11(3) --------->MYB46(3)  ------->TEIL      --------->ZAT14 <---------At4g35610    <---------YAB1       ------>ZmHOX2a(1)   tatgaagctcactcctttcgactatagtcggagacttgagcttcttctctttcattttgtcatcaataagatacagcaactccttcaaaccaactccggt  18453600                                                                    --------->LBD16                                                                   <---------HSFB2a(2)                                                                   --------->HSFC1(1)                                                                   --------->HSFB2a(2)                                                                   <---------HSFC1(1)                                                               <----------DOF2                                                              --------->HSFB2a(1)                                                              --------->HSFC1(2)                                                              <---------HSFB2a(1)                                                              <---------HSFC1(2)                                                            <-----------ARR10                                                          --------->LBD16                                                         --------->HSFB2a(2)                                                         <---------HSFB2a(2)                                                         --------->ANAC46     <---------GLK1(2)                                   --------->ANAC55(2)     --------->ARR14(2) ------>ZmHOX2a(1)              --------->MYB52(1)     <---------ARR14(2) <----------DOF2      <----------DOF2<---------ARR14(2)    --------->TGA2(2) -->LBD16       ----------->RAV1(2)          <---------DAG2 --------->ARR14(2)  --------->ETT(2) -LBD16        --------->ARR11(3)    <---------At4g35610<---------LBD16   <---------LBD16   taatgcagaaactctaacatctggtcctttcttatttgcagcatctactttagcaacttccggaactttccagaactcagggtcgtcagcattttcatct  18453700  Previous    Next  AGI:  At3g49720.1    Description:  Identical to Uncharacterized protein At3g49720 [Arabidopsis Thaliana] (GB:Q9M2Y6;GB:Q93YM8); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65810.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74732.1); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335) Range:  from: 18450988    to: 18453183    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g49730.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G65820.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71515.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24801.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 18453260    to: 18458631    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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