Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              <--------                                                                                            <--------                                                                                            <--------                                                                                            <--------   <---------WOX13(1)                                                                       --------- ---------YAB1                                                                         --------->At4g35610 ----->GLK1(2)                                                                        --------->RAP2.3(3) -----GLK1(2)                                                             <------ZmHOX2a(1) --------- >ZAT14             --------->TOE2(3)  <---------ANAC55(2)         <-----------HVH21--------->At4g35610 -ZAT14      <---------TOE2(3)         <---------ANAC55(1)       --------->LBD16    <---------ZAT2 -ZAT18  <----------DOF2               --------->ANAC55(2)      <-----------RAV1(2) <---------At4g35610 -->AtSPL3   ---------->ID1  <---------ARR14(2)              <---------ARR14(2)     --------->ZAT2 -->AtSPL8 ----------->HVH21 --------->ARR14(2)              --------->ARR14(2)------->TEIL<---------CCA1(2)   ttctgattaatctttgacgttttcttaatcgaatatgaattaagtgttgtttcttctgtatcaaatccaggttagaggatgaaccgagcagccaaatctt  18381100                                                                                               ------                                                                                            ------>MYB46(1)                                                                                            ------>MYB83                                                                                   --------->CCA1(2)        --------->ARR14(2)                                                         <------ZmHOX2a(2)        <---------ARR14(2)           --------->YAB1                               <---------ARR14(2) -ARR14(2)                     --------->YAB1                                     --------->ARR14(2) ---ARR10                  <---------YAB1                    <---------PCF2       <---------ARR11(3) -ARR11(1)               --------->YAB1                   --------->ALFIN1        --------->AGP1 -ARR11(3)              <---------ATHB12            --------->ALFIN1<---------TOE2(3)     --------->TOE2(3) >ARR14(2) <---------ALFIN1--------->ICU4         <-----------RAV1(1)             --------->ARR11(3) >ARR11(3)--------->MYB46(3)<---------ICU4        --------->ALFIN1  <---------TOE1(3)     <---------MYB59   cagaagttcagaaccacctagtccgaatcataatcagaatcaaaacagcaaggtgtggcagtggctccctaaggttagcatcaagatccaaacctaatac  18381200                                                      <---------------AGL15                                                    --------->MYB52(2)                                                   <---------TOE1(2)                                                  <---------MYB52(1)                                                <---------ANAC58                                         <------NtERF2--------------->AGL15                                        --------->RAP2.6(2)              <---------At4g35610   <-----          --------->WOX13(1)          --------->At4g35610         --------->MYB46(3)           ------        <---------YAB1        <---------ALFIN1  <---------ANAC58<-----------GT1               -------       --------->TOE2(3)   --------->ANAC46<----------DOF2   --------->YAB1                <XXXXXXXXX --->ARR11(3)       --------->GLK1(1) <---------At4g35610<---------YAB1  --------->At4g35610  -------   cttgagcatcatcaatctacagagttctccctccacattcagcggcattttcgtttgtttttatagtaaccactaagctcaatctactgaaacaaaatat  18381300          --------->ARR11(3)          <---------ARR11(3)         --------->YAB1                                                                            --        <---------YAB1                                                                            <--  <---------MYB46(3)                                                                     <---------GLK1(2) ----ARR11(3)           --------->ANAC58                                                --------->HSFC1(2) --->ARR11(3)           --------->ANAC58                                                <---------HSFC1(2) -->RVE1(1)         --------->ANAC46                                                   --------->ANAC58 XXXXXXXXXXXXMIR447A/B  ----------->GT1        <----------DOF2    --------->At4g35610  --------->ANAC58 -->CCA1(1)  <---------YAB1               <---------At4g35610--------->YAB1     --------->ANAC46-----   ctcgttgttgatgatattatacaaacaagtaaaatgtctatttgagcttctttcatgcttcaaacatcatctaaattcagacacaaaacaagcttctcta  18381400         <---------DAG2         <----------DOF2      ------>MYB46(1)      ------>MYB83    <---------MYB55(2)    --------->MYB46(3)   --------->ANAC58   --------->ANAC46         ----------->GT1   --------->ANAC58  ---------->DOF2 --------->ANAC46--------->TOE2(3)                            ----------->GT1 ------->ANAC46  <---------MYB59                      --------->YAB1            ----------->GT1 -------REM1(2)  --------->TOE1(3)                 --------->GLK1(1)       ---------->DOF2      <---- ---->ZAT14   <-----------GT1                      <---------GLK1(1) <-----------RAV1(1)    <--------   tacacacccaacttttttacctaaaaagaatggagaaattgagcaattttcagaaatcagaactgagtaaaatgtggcaaagacgataaatgggcttttt  18381500                      ------------>CBF                     <<<<<<<<<<<<<<<<<LFY        *TSS                     >>>>>>>>>>>>>>>>>LFY       --------->CCA1(2)                   <-----------GT1      <------ZmHOX2a(1)                                          -- -------GT1     ----------->TBP--------->At4g35610            --------->At4g35610           --------- --DOF2  <---------CCA1(2)     <---------At4g35610--------->CCA1(2)      ---------->DOF2    <--------   tcaggcccagcatatcatatataacccaatgggagatgagaaggagggagagataagactgagaagcagagaaccgaaagaagaaaacaaaactctcgaa  18381600                                       <---------DEAR3(1)                                       <---------ANAC46                                       --------->ALFIN1                                      --------->At4g35610                                      <------NtERF2                                      --------->ATERF1(1)                                      <---------LBD16                                      <---------ABI4(1)                                      <---------At4g35610                                     <---------RAP2.6(1)                                     <---------DEAR4(2)                                     <---------ORA47(2)                                     <---------RRTF1(1)                                     <---------ATERF1(1)                                     <---------ERF1                                     <---------RAP2.3(1)                                     ------>NtERF2                                    <---------ATERF1(2)                                    --------->ATERF1(2)                                    <---------DREB2C(2)                                    <---------RAP2.6(2)                                    <---------DEAR3(1)                                    <---------RRTF1(3)                                    <---------RRTF1(2)                                    <---------RAP2.3(3)                                    <---------RAP2.3(2)                                   --------->ATERF1(1)                                  <------MYB83                                  <---------ATERF1(1)                                  <------MYB46(1)                                 <---------DEAR3(1)                                 --------->MYB111(1)                                 --------->MYB46(2)                                 --------->MYB111(2)                                <--------P                              <---------MYB46(3)                    <---------LBD16                             <---------AtMYB61           --------->At4g35610  -------->HAHB4                          <---------AtMYB61          <---------ARR11(3)       <---------ICU4                        --------->CCA1(2)           --------->GLK1(1) --------->LBD16    <---------ANAC58        ---------->DOF2--------->ARR14(2)           <---------GLK1(1)<---------ANAC46 <---------DEAR3(1)     ------->GAMYB     --------->ARR11(3)   <------ZmHOX2a(1)       <---------At4g35610  <---------ANAC46  ----------->RAV1(1)  --------->ARR11(1)   =================HOX2a_HOX2a      --------->ATHB12 ------->RAP2.6(2)     <---------ARR11(3)<------NtERF2<------ZmHOX2a(2)      --------->ICU4 >HSFB2a(2)            <---------ARR14(2)--------->ATERF1(1)     --------->At4g35610 --------->ATERF1(1) -HSFB2a(2)  --------->CCA1(2)--------->MYB55(2)  <------ZmHOX2a(1) --------->At4g35610  <---------ANAC58   gtcgcaacagaaaagaaacgagagagatatggtggtaggcggcggaggagaaggagatcagaagagaagcagcggagaaatgatggcgatggcgagttta  18381700                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                    -                                                                                                   <-             --------->ARR14(2)                                                                    <-             --------->GLK1(2)                                                                     --        --------->At4g35610               ---------->DOF2                                     -------        <---------At4g35610     ----------->GT1                          <---------MYB46(3) ---------     <------ZmHOX2a(2)         <---------TOE2(3)                --------->ANAC46          <---------LBD16   ------->GAMYB               <---------TOE1(3)                --------->ANAC58        --------->ARR14(2)  --------->MYB46(3)          <-----------RAV1(2)               --------->ANAC58        <---------ARR14(2)   ttcaacgatcagcagaatccaattcaacagtttcaggttaaattcaaagaagtagaaactaatttcaagacatggttgtcgaaacagtcgattccggtgg  18381800             --------->ANAC46            --------->MYB46(3)          --------->ARR14(2)      <------NtERF2     ------>NtERF2     <-----------HVH21    --------->DEAR3(1)    --------->RRTF1(3)    --------->RAP2.3(2)    --------->RAP2.3(3)   <------NtERF2   --------->ERF1   --------->RAP2.3(1)                                                                      <--------   --------->DEAR4(2)                                                                      --------->WRKY12   --------->ATERF1(1)                                                                     --------->WRKY45   --------->RRTF1(1)                                                                      --------->WRKY38(1)  <---------ATERF1(1)                                                                      ----------  ------>NtERF2                                                                           --------->DOF5.7(2) --------->RAP2.6(2)                                                                     <-------GAMYB --------->RAP2.3(3)                                                                    <---------DEAR3(1) --------->DEAR3(1)                                                                   ------>NtERF2 - --------->RAP2.3(2)                 <----------DOF2                                  --------->LBD16 -------->RAP2.3(1)                --------->At4g35610                               --------->ATERF1(2) -------->DEAR3(2)             --------->ANAC46                                      <---------DEAR3(1) -------->ATERF1(1)       <---------ZAT14                                            --------->DEAR3(1) -------->ERF1           <---------ANAC46                                           --------->DEAR3(2) --------At4g35610     <---------ANAC46<---------YAB1                             --------->ANAC58  - --------ATERF1(1)    <---------DEAR3(1)                              ------>ZmHOX2a(1) <---------ANAC46 ------->At4g35610   --------->At4g35610--------->ATHB12              --------->LBD16<---------ATERF1(2) -->ALFIN1<---------ARR14(2)<---------REM1(2) <---------AtMYB61     ----------->RAV1(2)<------NtERF2- >LBD16  <---------CCA1(2)--------->ZAT14  <---------AtMYB61<---------ALFIN1      --------->ANAC58---   aagccgccgtcgtatccaccatgagcggtgtacaaggagctttcattggtggtctcatgggaacactctctcctgaaatgcctcaagccggcgttgaccc  18381900 -WRKY18(1)                                           <---------YAB1 ->HVH21                                              ------>ZmHOX2a(1)                    <---------TOE1(3) -------->ANAC58                                     --------->TOE2(3)                     <---------TOE2(3) -------->ANAC46          <---------TOE1(3)       <---------ARR14(2)            --------->CCA1(2) -------->ANAC58         <-----------RAV1(2)      --------->ARR14(2)         <---------TOE2(3) ------->DOF2         --------->ZAT2        <-----------GT1        ----------->GT1 --------->YAB1   tcaagccatagcttcgatgaaacaagctcaggtttcaactctatataaaccctatcctcattcaaatgtttgtaaaattgaggtatgagaattagggttt  18382000  Previous    Next  AGI:  At3g49560.1    Description:  mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein. similar to mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana] (TAIR:AT5G24650.1); similar to H0502B11.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66528.1); contains InterPro domain Sterile alpha motif SAM (InterPro:IPR001660); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) Range:  from: 18381549    to: 18383124    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version