Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100    <---------GLK1(1)                                                           <---------YAB1 --->MYC3                                                                   <--------HAHB4 ----MYC2                                                                   --------->YAB1 --->MYC2                                                         <---------GLK1(1) ----MYC3                <----------ID1                           --------->GLK1(1) ---->ANAC58           ---------->DOF2                         --------->ANAC58 ---->ANAC55(2)     --------->ANAC58                           --------->ANAC58 ------>GT1         --------->ANAC58                <---------AHL20(2)      <---------ICU4 -----ANAC55(2)------->GAMYB  ---------->DOF2       --------->AHL20(1)     --------->ICU4           - -----TGA1a    --------->ANAC46                     --------->AHL20(2)     <---------YAB1           < -----O2       --------->DEAR3(1)                  <---------ATHB12--------->GLK1(2)<---------YAB1--- ---->O2       --------->RAP2.6(2)                 --------->AHL20(2)      <---------ATHB12     ----- ---->ANAC58  --------->MYB46(3)      ----------->GT1     --------->At4g35610 --------->ICU4   ------ ---->TGA1a  <---------At5g28300  --------->ARR11(3)<---------AHL20(1)   --------->YAB1        ------   gtgaatttccccattaaccgccaagaaaagacaaaagaaattgtagaaaatcaataaattagctcaagaaatctgtaatcatttttaaaattgacaataa  18378800                                                        ----------->GT1           <---------At5g28300  ------->GAMYB      --------->AHL20(2)    <---------AHL20(2)        >>>>>>>>>MYB98     <---------HSFB2a(2)    --------->AHL20(2)       --------->MYB52(1)  <---------------AGL15 --------->AHL20(2)        <---------MYB52(2)    --------------->AGL15 -------->AHL20(2)        --------->ANAC58       --------->HSFB2a(2) ---------AHL20(2)        --------->ANAC55(2)   <-----------------AGL2 ------>YAB1              --------->ANAC46      <-----------------AGL3 ---->AHL20(2) <---------MYB52(1)        <---------WOX13(1) --->AHL20(2)----------->GT1----------->HVH21   ----------------->AGL3               <<<<<<<<<TBF1  < --->YAB1 <-----------GT1 --------->ANAC58 --------->ATHB12    <---------ICU4     <<<<<<<<<TBF1 <----   aaataaataaatataccgtttatttttcaagtaacggagttagattgatttctataaatagttaaaaatgaccaattcatcttcttcttcttcacaaact  18378900                          <---------ANAC46                          <---------ANAC58                     <---------ANAC58                                                         -------                     <---------ANAC58                     <---------At4g35610                 -------         --------->MYB46(3)------>NtERF2        <---------ARR14(2)                            <------       ----------->RAV1(1)<---------ANAC58      --------->GLK1(2)              <---------AHL20(2) ----------DOF2<---------YAB1           <---------ZAT6 <---------At4g35610    --------->AHL20(2)  <-- ------DOF2    <---------AHL20(2)--------->ICU4 --------->ARR14(2)        <---------AHL20(2) --------   ttctttctccaacaaatattattcagtgccgagtcaaaattagtgttgagaatttgctgcttctgatcaggtctgttttatttaatctctgtgaatttta  18379000                                                                                --------->ICU4                                                                             <------ZmHOX2a(1)                                                                             ========================                                                                            ----------->GT1                     ---------->DOF2                                 <---------------AGL15                  --------->YAB1            <---------AHL20(2)       --------------->AGL15                ------>ZmHOX2a(2)          --------->AHL20(2)       <-----------------AGL1 -->AHL20(1)   <---------GLK1(1)   <---------ZAT2                   <-----------------AG -->AHL20(2)  <---------AGP1       --------->ZAT2                   ----------------->AGL1          - ---AHL20(2)  <---------ARR11(3)   --------->At4g35610  <---------WOX13(1)  <----------ID1          < ---------GT1 --------->ARR11(3)   ----------->RAV1(2) <------------CBF    --------->MYB59 --------->YAB1 ->AHL20(2)  <---------CCA1(2)     <---------At4g35610--------->ATHB12 --------->ATHB12--------->ZAT6   ttacttcttcttgttggatctcataatgcgatttatcagctgcgattaaatctgtttgattgaaatttatgcctgattaggaaaaattatctctaatagt  18379100               <---------AHL20(2)         <---------MYB52(1)       <---------ANAC58       <---------ANAC58                                                                            -- ======HOX2a_HOX2a                                                             ------------>CBF    -- ----------->CBF            <---------ANAC58                             <----------DOF2      ------- ------ZmHOX2a(2)           <---------ANAC58   <---------ZAT14 <----------DOF2<<<<<<<<<<<<<<<<<LFY <-   ggatcaatttcgtttttttaattcgggttttcttgggttatgcagtgagtgaagaaagtttgaagctttgagtaactttgaaacaatggaggtatttgga  18379200            <-------GAMYB           <---------MYB46(3)           --------->MYB111(1)           --------->MYB55(2)           --------->MYB111(2)                                  <---------MYB59          <--------P                        --------------->AGL15            <---------YAB1        <---------MYB46(3)                  <----------DOF2    --------->ANAC58       --------->ALFIN1            --------->ANAC55(2)         --------->ANAC58 <---------WOX13(1) ------->ARR11(3)                <-----------GT1             <------ZmHOX2a(1)--------->ATHB12 ------->GLK1(2)                 <---------AHL20(2) <-----------HVH21--------->YAB1                 - ---->GT1<-------GAMYB   <---------TOE2(3)  <---------------AGL15   <---------ATHB12            ----- --------ARR11(3)    <---------At4g35610   <-----------------AGL2 --------->WOX13(1) <---------GLK1(1)   aaatctcatgtggttgttggctctgctaatgttatttacttatctgctatattgggtcacgaaggacccaatcacaaatgtgattggaaatgcgagaatg  18379300                                                                     --------->MYB52(1)                                                                    --------->AtMYB61                                                                    ------->GAMYB                                                                   --------->MYB46(3)    --------->YAB1                                                                  --------->ANAC58       <---------ICU4                                                           --------->ARR14(2)           <---------YAB1                  ------->TEIL                <---------YAB1      --------->ANAC58    --------->YAB1        ----------->GT1        --------->MYB52(1)          <---------ARR11(3)      --------->YAB1     --------->ALFIN1        <---------MYB52(2)          --------->ANAC58 --------->ARR11(3)   --------->ALFIN1  <-------GAMYB     --------->WRKY38(1) <---------ARR14(2)     <---------YAB1 -------->GLK1(2) <---------At5g28300  --------->WRKY12  --------->ANAC58<------ZmHOX2a(1)       <--- ---->YAB1    <---------------AtSPL3 <-------GAMYB  ----------->HVH21---------->DOF2 <---------YAB1   agaatgtgtgtgggaatatgtaccgttgcaaactaactgggttgactcatgtttgtgacaagaactgcaaccaaaggattttgtatgataatcataactc  18379400                         <---------LBD16                        <<<<<<<<<<E2Fe                        <<<<<<<<<<E2Fc                       <-----------GT1                      <-----------GT1                    --------->GLK1(1)                    <----------TaMYB80                   <---------ARR14(2)                   <---------GLK1(2)                   --------->ARR14(2)                   <-----------ARR10                --------->At5g28300                --------->ETT(1)                    <-------GAMYB             <---------MYB46(3)     <---------MYB46(3) ---------->DOF2            <---------ZAT6       <----------DOF2   <---------MYB46(3)                          ------       --------->STY1(2)<<<<<<<<<<E2Fd             ----------->GT1               <---------YAB1======       <---------STY1(2)<<<<<<<<<<E2Fa     <------ZmHOX2a(1)                  <---------YAB1  <------    <---------ANAC58--------->HSFB2a(1)  <---------TOE2(3)    --------->ALFIN1--------->ICU4  -------    <---------ANAC58<---------GLK1(1)<-------GAMYB<---------DEAR3(1) <------ZmHOX2a(1)     --------->MYB46(3) -------DOF2<---------AtMYB61<----------DOF2  <-----------RAV1(2) <------ZmHOX2a(1)     <---------WRKY38(1)   tttgtgtcgagctagtggtcggattttcccgctttctttggttgaggaacaggcggttaaaggagtgaggaggaagcttgatgatgagagtcaacaacaa  18379500                             --------->ALFIN1                           --------->O2                           =====================================bZIP_DOF                           <---------O2                           <---------TGA1a                        --------->ETT(2)                        --------->DEAR3(1)                        <---------DEAR3(1)                       <------NtERF2           <---------ZAT6  =====================================bZIP_DOF--------->ZAT2    ---------->DOF2    --------->ATERF1(1)                              <---------ZAT2    =================================bZIP_DOF                           <---------At4g35610  <---------HSFB2a(2)--------->DEAR3(1)                                 --------->At4g35610     -----  --------->HSFB2a(2)<---------DEAR3(1)                              <---------At4g35610        <---- ->GAMYB   <---------ANAC46--------->TGA1a                       <----------DOF2   <---------DAG2 ====================================MYC_MYB                  --------->ARR11(3)   ------>ZmHOX2a(1) ---MYB111(2)        <---------ANAC46                         <---------ARR11(3)   <----------DOF2--- -->MYB46(3)       <-----------HVH21     <-------TEIL<----------DOF2<-----------RAV1(1)    ------>NtERF2   ccttctgaaagttgtgttaagcgtcgtcgacgtgatgctcagtttcattcttctccttttgagaggtcttttgctgctgtgagtcctttttgcagccaag  18379600                                                                 ---------->ID1                                                                <-----------------AGL1                                                        <---------DAG2                                                        <----------DOF2                                                       <---------ANAC58                                                       <---------ANAC58                          <--- <---------ANAC46                                  <---------ANAC58                         <-------- ---->ZAT2                <---------ARR11(3)       <---------ANAC58                         --------- -----ZAT2   ----------->GT1 <----------DOF2     --------->ARR11(3)          --------->ANAC58<------- ------>ALFIN1      <-----------GT1           --------->YAB1 <----------DOF2 --------->ANAC58<-------   ctggtggagatggaatggagattaactagttcttttctatctcacctagaataacttgcttttctttttcgttttggacaagtatgcaataagagatatt  18379700  Previous    Next  AGI:  At3g49550.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G24610.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64634.1) Range:  from: 18379186    to: 18379629    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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