Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->WOX13(1)                    <---                                                  --------->AHL20(1)                 ------->GAMYB                                --------->YAB1    <---------AHL20(2)           --------->HSFB2a(2)                      --------->AtMYB61           --------->AHL20(2)           <---------HSFB2a(2)                <------ZmHOX2a(2)                 <---------AHL20(1)           <---------ANAC55(2)                ==================================HOX2a_HOX2a                  --------->ANAC55(2)<--  ----------->GT1   >>>>>>>>>>MYB80              --------->AHL20(2)     ---------->DOF2         ----- --->YAB1      --------->ARR11(3)              --------->YAB1   ------>ZmHOX2a(1)    --------->YAB1 - --ARR11(3)    <---------ARR11(3)          ------>ZmHOX2a(1)   --------->TOE2(3)    --------->MYB46(3)   tcatgcgttaaaactaagatcaaaccaaaacgaatcaaaatcgtcctaagaataaattgatcaatcctcaaatccaaagttctgtaaccatcacagtacc  18359300                                                <---------ANAC46                                    --------->YAB1        <---------At4g35610                                   <---------ATHB12       --------->At4g35610                       - ----GAMYB                     <---------AHL20(2)    --------->bZIP60(1)                            - -------MYB52(1)               --------->AHL20(2)    <---------bZIP60(1)                            - ------>GT1            --------->DAG2           <---------ANAC58                             <------- --------->DOF2       ---------->DOF2           <---------ANAC58             <------ZmHOX2a(1)    <--   gttaaaccccaaattttgtttttaaaaagggatttaaatcataccatgttgagtgttgtcagcataaaacgatgaagaaggagtctgagagcgagaattt  18359400                               <------NtERF2                              --------->LBD16                              <---------DEAR4(2)                              <---------ATERF1(1)                              ------>NtERF2                             <---------ATERF1(2)                             --------->DEAR3(1)   --------->CCA1(2)         <---------DEAR3(1)                                               <------  --------->ARR14(2)         --------->ATERF1(2)                                              <------  <---------ARR14(2)  --------->WOX13(1)                                                    --------- -------->ANAC46  >>>>>>>>>>WRKY26   <-------GAMYB <---------YAB1                          --------->ATHB12 -------->ANAC58  <-----------GT1   ------>ZmHOX2a(2)                           <----------DOF2 <---- -------->ANAC58  >>>>>>>>>>WRKY38  <---------MYB46(3)                    <---------ALFIN1<------ZmHOX2a(2) --KAN4(2)----------->GT1   <---------LBD16      --------->YAB1      ================================ ---------GT1     >>>>>>>>>>WRKY43 <------ZmHOX2a(2)                 <------ZmHOX2a(2)    ===========   tcacgatacgatgggttatttgaccaattagccggcgatcgttgataagagtcatgatacaacatcatcggatcaaacacttctttggctggatcatagg  18359500                                   --------->ZAT2                                   --------->At4g35610                                  --------->GLK1(2)                              <------NtERF2                              <-----------RAV1(2)                             ------>NtERF2                            --------->DEAR3(1)                            <---------ANAC46                           --------->RAP2.3(1)                          <---------RRTF1(1)                          <---------ORA47(2)                          <---------DEAR3(2)                          <---------RAP2.6(1)                   --------->ALFIN1                 ----                          <---------ATERF1(1)                 --------->MYB55(2)                -----                          <---------RAP2.3(1)                <---------DEAR3(1)         --------->ANAC58                          <---------ERF1                     <---------AtMYB61          --------->ANAC58                          <---------DEAR4(2)                 --------->ALFIN1          <-------TEIL                         --------->DEAR3(1)                 <---------ABI4(1)          --------->ZAT18        <---------WOX13(1)------>NtERF2                     <------NtERF2            <---------ARR14(2)     --------->LBD16     <---------RRTF1(2)                <---------DEAR4(2)        --------->ARR14(2)    ------->GAMYB        <---------RAP2.3(3)              <---------DREB2C(2)      <---------------AtSPL3   <---------LBD16       <---------RAP2.3(2)              <---------DEAR3(1)========================= ---TOE1(2) <----------DOF2--------->ATERF1(1)      <---------REM1(1)       ----------------->AGL1 ---TOE2(2)<---------ANAC58--------->RRTF1(1)       --------->ALFIN1        ----------------->AG<---- >TOE1(2)  <---------ANAC58<------NtERF2         <---------AtMYB61  <---------At4g35610--------->SPL7 --ZmHOX2a(1)            <---------DEAR3(1)   --------->ALFIN1<---------MYB46(3)   <---------------AtSPL8 ==HOX2a_HOX2a           <---------RRTF1(3) <---------ANAC46<-------GAMYB   ----------------->AGL2 ==HOX2a_HOX2a          <---------ABI4(1)   <---------bZIP60(2) <---------ANAC46--------->MYB52(1)   attcaaccggattgctttgttgaaacggcggcgcagaagctggatgatgtggaggtgtaggcggtggtggagatgagagccaaaacgggtacgctattcc  18359600                                                                                   <---------At4g35610                                                                                   --------->At4g35610                                         --------->AtMYB61                  <---------REM1(1)                                         --------------->AGL15              <-----------RAV1(1)         ---------->DOF2                ----------------->AGL1           --------->ALFIN1        --------->YAB1     <---------WRKY38(1)               <---------REM1(1)     --------->ZAT2       <---------YAB1      <---------WRKY12             <-----------------------TaNAC69(2) ----->LBD16              --------->WRKY18(1)     <------ZmHOX2a(1)   --------->DAG2 ---->HSFB2a(2)          <-----------HVH21    <XXXXXXXXXXXXXXXXXXXXMIR837-5P<---------MYB46(3) ========================================================MADS_MADS   ---------->DOF2*TSS -----HSFB2a(2) --------->GLK1(1)       ----------------->AGL2  ----------->GT1    <---------ZAT2 <--   agagaaaccattatagcgaaatccatcggtcatcgttttctcaccaaaacgaggaagagactggtgaaggaaaaagtgttgttgcagctcaagtgtttca  18359700                                                       --------->ANAC58                                                       --------->ANAC58                                                      <---------GLK1(1)                                                     ---------->DOF2                                                  <---------TOE2(3)                                            <---------------AGL15                                            --------------->AGL15                                           <-----------------AGL1                                           <-----------------AGL3                                           ----------------->AGL2                                    <----------DOF2 <------ZmHOX2a(1)                   --------->ANAC46  ------------>CBF        ------------>CBF <-----------------AG--------->YAB1     <-----------TBP -------GLK1(2)       <---------GLK1(2)    ----------------->AGL1                ------->TEIL   <----   gaatgtcaatgtttatcggaattagcttctcaatgggcctttaaggccttataaggaaagccctataatgtcactaaaaaatgaatttataagtcattta  18359800                                                                       <---------AHL20(2)          --------->YAB1                                              --------->AHL20(2)          <---------ICU4                                       ------>ZmHOX2a(1)         <---------YAB1                                       <---------MYB59  <-------TEIL        --------->AHL20(2)                             <---------CCA1(1)   <---------------AtSPL8       <---------ICU4                                  <---------RVE1(1)   <---------ICU4       --------->YAB1                        ----------------->AGL1--------->YAB1             <------      <---------YAB1                       <-----------GT1 <-----------GT1 --------------->AtSPL8   <---------AHL20(2)               --------->AHL20(2)<---------ARR11(3)  --------->ICU4  ------->TEIL   --------->AHL20(2)               --------->YAB1    --------->ARR11(3)--------->YAB1 --------->ANAC55(2) -------GT1                 <------ZmHOX2a(1)----------------->AG <---------ATHB12  <---------AHL20(2)   actgtttaattataatcacagataaatacaggagtcaataaaaatttaccaattcagatattttcctaatcatataataagtacattttatgtatttcac  18359900                                                                    <---------YAB1                                                                  --------->YAB1                                                                ----------->GT1       <---------YAB1                                     ------>MYB46(1)     --------->YAB1                                       ------>MYB83    <---------YAB1                                       ----------->RAV1(1) <---------YAB1                      --------->TOE2(3)  ------->GAMYB--------->YAB1                 - -----GT1---------->DOF2         <-------TEIL          --------->MYB46(3)                         ---   attttgattataaaagtctcaagactctcatttgattcatcttaatcaaaccagttaaccaacatcaagtataataagagcaaatcaaatttgttttgaa  18360000                          ----------->GT1                     --------->AHL20(2)                   --------->At4g35610        --------->ANAC58           <---------ARR14(2)                         --------->ANAC58               --------->ANAC58           --------->ARR14(2)                         --------->ANAC58      ------>ZmHOX2a(1) -------->YAB1     <<<<<<<<<<GATA-1         --------->ANAC58            <---------ARR14(2)         XX ------>AHL20(2)<---------TOE2(3)           --------->ANAC58            --------->ARR14(2)       ----   aataataagagcatatttgacgataatatagtagaatacattacacaaacaatggcaagcagttgagctatacaaatcctgaacagcaagcagtttttgc  18360100                       --------->AHL20(2)                 --------->ANAC58                      --------->ANAC58                 --------->ANAC58                      --------->ANAC58             <-----------TGA1                          --------->ANAC46             <-----------HVH21                         --------->ANAC55(2)            --------->bZIP60(1)                       --------->RAP2.6(3)            <---------ANAC58                       <----------DOF2            <---------bZIP60(1)                 --------->ZAT18        <---------HSFC1(2)                   --------->ALFIN1        --------->HSFC1(2)                  <------NtERF2                          <----------CDC5      --------->ARR11(3)            <-------TEIL<---------ZAT18  --------->YAB1   --------->At4g35610      <---------ARR11(3)           --------->CCA1(2)  --------->SPL7    <----------DOF2   --------->ANAC58 XXXXXXXXXXXXXXXXXXX>MIR447A/B    <---------ARR14(2) --------->MYB52(1)<---------DAG2     --------->ANAC58 ------>DOF2<---------ANAC58      --------->ARR14(2)<---------SPL7     --------------->AGL15   aaagacaagatgtttcgtcacacaaaaaaatccacagatacatggcagagtggccttacggcattaaacataaccttttagagacgctgagcaagaaact  18360200  Previous    Next  AGI:  At3g49490.1    Description:  unknown protein Range:  from: 18355729    to: 18359684    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g49500.1    Description:  RDR6 (RNA-DEPENDENT RNA POLYMERASE 6); nucleic acid binding. similar to RDR1 (RNA-DEPENDENT RNA POLYMERASE 1), RNA-directed RNA polymerase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G14790.1); similar to putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana] (GB:AAU21242.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44232.1); similar to RNA-dependent RNA polymerase 6 [Nicotiana tabacum] (GB:BAF96019.1); contains InterPro domain RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855) Range:  from: 18360178    to: 18364190    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version