Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                     <---------ICU4                       --------->AHL20(2)          --------->YAB1                   <---------RVE1(1)              <---------ATHB51                   <---------CCA1(1)              --------->ICU4              --------->ICU4                  --------->ARR11(3)           <---------YAB1              <---------AHL20(2)                  <---------ARR11(3)         --------->YAB1       --------->ZAT14           --------->AHL20(2)                <-----------GT1      <---------ZAT14          <-------TEIL           <---------ARR11(3)           --------->At5g28300  <---------YAB1--------->AHL20(2)         --------->ANAC58              ----------->GT1    <---------AHL20(2)<---------AHL20(2)         --------->ANAC58             --------->ZAT6 <---------YAB1       <---------AHL20(2)  --------->AHL20(2)   <---------AHL20(2) <---------ICU4------->TEIL----------->GT1 ---------->DOF2   caaattaaaccaagaaattagatatttatattgaatatcaacagtaattacaattatgaatttatgagtatagtatattaattagtaaaagggttcaagg  18351200                                               <---------ANAC58                                               <---------ANAC58                                              --------->ATHB12       --------->ZAT14                                          <---------ZAT2             --------->ZAT18                                          <------NtERF2              <---------ZAT18                                          <---------At4g35610        <---------ZAT14                                          --------->ZAT2    --------->At4g35610                    <-                     <-----------GT1      --------->At4g35610   ---------->DOF2                    --              --------->TOE2(3)    <-----------RAV1(1)      <---------At4g35610                 -----              <---------MYB59 <---------At4g35610         --------->HSFB2a(2)    --------->RAP2.6(3)        --------->ANAC46      --------->At4g35610         <---------HSFB2a(2)   --------->MYB52(1)---   agagaagaatacgataccttatttttctcttcagctactggggcagcttgagtggcacttccagatgaaagtgcagaagaaaaaacggccatgggagaag  18351300              <------NtERF2              --------->At4g35610             ------>NtERF2             ----------->RAV1(1)          <---------ATERF1(1)         --------->ANAC46         --------->ATERF1(2)         --------->DREB2C(2)         --------->DEAR3(1)         <---------ATERF1(2)        <---------LBD16       --------->MYB52(1)      <---------ALFIN1     --------->MYB46(3)    <------ZmHOX2a(2)   <---------ARR11(3)   --------->AGP1   --------->ARR11(3)           <------ZmHOX2a(2)   --------->ARR14(2)          --------->ARR11(3)   <---------ARR14(2)          <---------ARR11(3)  --------->At4g35610        ----------->ARR10  --------->GLK1(1)      <---------ICU4 --------At4g35610      --------->ICU4 ------->At4g35610      <---------YAB1                 <------NtERF2 ---->At4g35610       --------->YAB1                 <---------ANAC46                              >> -------->RAV1(1)    <-------TEIL                   <---------LBD16    <---------YAB1             <--   cagcagatccaccggcaccagcattcatgatgagatcatccatgtttttgttctggcggaagactaggccagtatgattcaatgttcaaattggctgttt  18351400                                                                               ------>MYB83                                                                               ------>MYB46(1)           <---------ARR11(3)                                                --------->TOE1(2)           --------->ARR11(3)                                   --------->YAB1 -------->P  <---------TOE2(3)     --------->YAB1                                             --------->AHL20(2)   <---------AHL20(2)    <---------ATHB12             --------->ANAC58               <---------AHL20(2)----------->GT1 >>>>>>>>>>>>>>>LFY              --------->ANAC46     <-------TEIL     --------->ANAC46  <---------ICU4 ---------GT1 <----------DOF2    --------->ANAC58 <---------------AtSPL8 --------->MYB46(3)<---------TOE1(3)   tcaccaatgttgacatctttctcagcctagtttacaagtaaacaaaatagtttgagtacatgttaattaaaacaaacaacctacaagttaattaaggctc  18351500                                                                                  <---------ZAT2                                                                                  <---------At4g35610                                                                   <---------ANAC46       <---------MYB52(1)                                                                   <---------ANAC58   --------->MYB52(1)                                                               --------->At4g35610--------->ZAT2                                                               <---------ZAT2 --------->ZAT2                                                --------->WRKY18(1)<---------ANAC58 ----------->HVH21                                        ----------->HVH21      --------->ZAT2 <---------ZAT2------>NtERF2                                       <-----------HVH21    ----------->ARR10 --------->STY1(2)              --------->ICU4           --------->At5g28300 <------ZmHOX2a(1) --------->ANAC58              <---------YAB1          ----------->GT1   <------ZmHOX2a(1)    --------->ANAC58<------NtERF2     <---------WOX13(1)         <-------TEIL   <-----------HVH21  <-------TEIL<---------STY1(2)   <------ZmHOX2a(1)       ---------->DOF2 <---------bZIP60(2) <---------At4g35610--------->At4g35610   cagtaggattgatgtcaagattgagcctagaaagtacatacggtgacatggtcatggaggaggagagctgcgtaagtgcaagctagctcaccggtggcca  18351600                           ------>ZmHOX2a(2)                          <------ZmHOX2a(2)                          --------->CCA1(2)                         <---------ARR11(3)                         --------->ARR11(3)                   --------->ANAC58                   --------->ANAC46                   --------->ANAC58                  --------->LBD16               --------->SPL7              --------->PCF2             <-----------HVH21            <---------ANAC58            <---------ANAC58  --------->ANAC46       --------->ZAT2    <---------ARR14(2)              --------->YAB1                         -----       <---------STY1(2) --------->ARR14(2)             <-------TEIL                           ------       <---------ZAT2---------->DOF2          <---------At4g35610                             <------       --------->STY1(2) --------->AGP1    ---------->DOF2   --------->GLK1(2)  --------->YAB1-------   ttgtaggctagctcgcgtcccacgaaagatctacaaaaccatcaatagagctcatcgattcataatctgaacttcaagtgaaacataaaaacaaaacgtg  18351700                                                      --------->ZAT18                                                 <---------TOE1(1)                                                 <---------TOE2(1)                                                --------->SPL7                                              <---------SPL7                                              --------->TOE2(2)                                <-----                         ------>MYB83         --------->TOE1(2)          <---------ZAT6      <------ZmHOX2a(1)                         --------->MYB52(1) --------------->AtSPL3       ----------->GT1<---------HSFB2a(2) ---->REM1(2)            ------>MYB46(1)    <---------TOE1(3)      <---------YAB1       --------->HSFB2a(2) --->ALFIN1            <---------MYB59      <---------TOE2(3) <---------AHL20(2)        <---------HSFC1(1) -MYC3                --------->MYB46(3)   <---------DOF5.7(2)--------->AHL20(2) <---------TOE2(3) >MYC3        ------->TEIL               --------->DOF5.7(2) --------->AHL20(2)  <---------TOE1(3)<--   tagagtctctgaatcgaacctgtaaccaaacagaagattaggggttaacgtacgaggtcactatttatttcgatagagttattagggtttctagaggatt  18351800                         <---------ARR11(3)                         --------->ARR11(3)                   ------->MYC4                   <-------MYC2                   <-------MYC3                   ------->MYC2                   <-------PIF4                   ------->PIF4                   ------->MYC3                   <-------MYC4                   <-------PIF5 --------->At4g35610                   ------->PIF5--------->ALFIN1                  <---------O2<-------MYC3                  --------->ANAC58 ------>NtERF2                  --------->ANAC58<---------PCF2                  <---------ANAC55(2)                  --------->O2------->MYC3                  <---------TGA1a <---------ATERF1(1)                  ----------->GT1<---------RAP2.6(2) <---------TOE2(3)--------->TGA1a<---------DEAR3(1)                 ----------------->AGL1   <------- ----YAB1         --------->ANAC55(2)                               <---------ANAC46  <------------CBF -------YAB1    <------------OsbHLH66               <------ZmHOX2a(1)             --------->TOE2(3)   attaatgtttcgaaatgggcacgtgaatatcatgtgcggcccagagaaaatttaggactggaatttcatggcctatatagataaccaaaattgttcttat  18351900                                                                                                 ----                                                                                       ----------->HVH21                                                                                      <---------ALFIN1                                                                                      --------->AtMYB61                                                                                     --------->ANAC46                      ----------------->AGL1                                         --------->bZIP60(2)                 ---------->DOF2                               <---------ALFIN1    <---------ALFIN1               ----------->TBP                <---------ARR14(2)                   --------->DEAR3(1)               <---------ATHB12     ------->GAMYB            *TSS                 --------->MYB46(3)      <---------At4g35610          <----------ID1         <-----------GT1 <-----------HVH21     <----      --------->At4g35610 <------------CBF    --------->ARR14(2)   --------->ANAC46--------->AtMYB61    <-----------RAV1(2)------------>CBF---------->DOF2   --------->DOF5.7(2)    --------->ANAC46<---- --YAB1    ------------>CBF     <---------WRKY38(1)    <---------MYB46(3) <-----------TGA1   <-------   taagcctcagaagcccaataaaaggcccaattggacaacgacaaagcagaacccgagtcgttaccacacacacagtcgtcactcaccacctcaccgttcc  18352000                        <---------ARR14(2)                                         <---------At4g35610             --------->ANAC58                                                     ------->TEIL          ----------->TGA1             --------->RVE1(1)               --------->ZAT14          ----------->HVH21           --------->ARR11(3)            <---------At4g35610        <---------At4g35610           <---------ARR11(3)        ------>ZmHOX2a(1) --------->ARR14(2)        --------->At4g35610     --------->TOE2(3)     --------->O2  --------->At4g35610 -->ZmHOX2a(1)          --------->ARR14(2)   --------->ANAC46------>ZmHOX2a(1)    <---------ARR14(2) -----ANAC58 --------->ANAC58   --------->TOE1(3)--------->ANAC58  ------>ZmHOX2a(1) -----ANAC58 --------->ANAC46<---------ARR14(2)  --------->ANAC58----------->RAV1(2)               -- --MYB52(1)<---------TGA2(2) --------->ARR14(2)---------->DOF2 <---------ALFIN1  <---------GLK1(2)---   ttatccatttggctgacgcaaaatcgaatcggaaccctaaaatctctccgaaagccatgtctcctcctcctgctgtagtcactgaatctgccgatggaca  18352100  Previous    Next  AGI:  At3g49460.1    Description:  60S acidic ribosomal protein-related. similar to 60s acidic ribosomal protein P1, putative [Arabidopsis thaliana] (TAIR:AT5G24510.1); contains domain PTHR21141:SF6 (PTHR21141:SF6); contains domain PTHR21141 (PTHR21141) Range:  from: 18351336    to: 18351601    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g49470.1    Description:  NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2). Identical to Nascent polypeptide-associated complex subunit alpha-like protein 2 [Arabidopsis Thaliana] (GB:Q94JX9;GB:Q9S7G0); similar to nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative [Arabidopsis thaliana] (TAIR:AT4G10480.1); similar to nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative [Arabidopsis thaliana] (TAIR:AT4G10480.2); similar to unknown [Populus trichocarpa] (GB:ABK93574.1); contains InterPro domain Nascent polypeptide-associated complex NAC (InterPro:IPR002715); contain Range:  from: 18351961    to: 18353474    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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