Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    <---------ANAC58                                                  <---------ANAC58                                                 ---------->ID1                                           <------NtERF2                                          <---------RAP2.3(1)                                         <---------DEAR3(1)                                         <---------RAP2.6(2)                                         <---------RAP2.3(2)             --------->ALFIN1                               <---------ICU4<----------DOF2         --------->ZAT2                            <---------ICU4<---------ERF1             --------->At4g35610           --------->CCA1(2)--------->YAB1------>NtERF2              <---------At4g35610 --------MYB46(3)          <---------YAB1<---------ANAC46   <---------At4g35610 ------>ALFIN1           --------->YAB1  <---------RAP2.3(3)<---------ZAT2 ---->ALFIN1             <---------ICU4 --------->RAP2.6(3) --------->At4g35610 -----ANAC46          --------->YAB1<---------bZIP60(2)   <--------P----------->RAV1(1) -ZmHOX2a(1)       <----------DOF2<------ZmHOX2a(1)      <---------MYB52(1) <---------MYB46(3)   gtggatgagtcagatttagggctttgatcatcatcaggacatggcggctttgtcgtctcggtagctgaagcagcagtgttgttgttgtctaaattctgac  18328600                                           ------>ZmHOX2a(2)                                        --------->ATHB12                                       <---------YAB1                                       --------->ICU4        ------->TEIL                <-----------GT1                                  ------->GAMYB======================================================                                 --------->MYB46(3)    ----------->GT1                --------->ANAC58          <----------DOF2      ----------->RAV1(1)    --------->DAG2     <------ZmHOX2a(2)      <---------ZAT18        --------->At4g35610      <---------TOE2(3) <---------ARR11(3)      --------->ZAT18        <---------At4g35610    ---------->DOF2 ---------->DOF2   --------->ANAC58      <---------ZAT14       --------->ANAC46   ----------------->AGL3   --------->ARR11(3)   cagaagagtccactttgacaccagcattctcagcaacagccatgatcggaccaaaaaaggttgaatctttaaaagatcagacaacaacaagttacgaact  18328700                               ---------->DOF2                        ------>MYB46(1)                        ------>MYB83                                                      --------->TOE1(2)                      <---------------AGL15                                              <---------HSFB2a(1)                      <---------MYB59                                                    --------->HSFC1(2)                      --------->AtMYB61                                                  --------->HSFB2a(1)                      ------->GAMYB                                                      <---------HSFC1(2)                    --------->ANAC58                                                 --------->ANAC58                    --------->ANAC58                      ----------->GT1            --------->ANAC58                  --------->MYB46(3)  --------->GLK1(2)  ----------->GT1     --------->GLK1(2)    <---------GLK1(1)--------->MYB46(3)                  ------------------------>ANAC81------->TEIL =====================================MADS_MADS --------->YAB1              <---------GLK1(2)    <---   cagtcgatttctgcatcaaaacaaccaaactaagaaagagaatttgagaatgagaagaaatggaaaaaaaaaaactcagaatttgatacgaaccttggag  18328800                                                              <---------At4g35610                                                            --------->YAB1                                                           <---------ATHB12                                                         --------->WOX13(1)                                                       <------ZmHOX2a(2)                                                  ---------->DOF2--------->At4g35610                                                <---------AHL20(2)                  ----------->GT1                                                --------->AHL20(2)       <------ZmHOX2a(1)                                      --------->YAB1   =========================HOX2a_HOX2a                      --------->TOE2(3)---------->DOF2<---------ARR11(3)<---------ZAT14             <        <------ZmHOX2a(2) --------->MYB52(1)<---------AHL20(2)--------->At4g35610 ---------->DOF2  <- ------ZAT6   ----------->GT1       --------->GLK1(2) --------->ARR11(3)--------->ZAT18  --------->DAG2   agttatctcgatcaaatggttaatccataaacggagagaatcaaagttaattaaaagatcaatgagcagaagagaggactgaaacaaagaaaaattggat  18328900         ----------->GT1       <---------TOE1(3)       <---------TOE2(3)         ----------->GT1    <---------AHL20(2)           <----------ID1                                                     -  <---------------AGL15       ---------->DOF2                --------->ATHB12                 ------- ---------AHL20(2)       <----------ID1                     --------->ICU4                 <--------- --------YAB1        <---------HSFB2a(2)                    <---------YAB1         *TSS    <---------MYB52(1)   ttttattttaagggaaaatagttagagaagacaaaaggagaaaacttggaaaattcaaggggatgattagaatagaaggaacacaagagacccctttggt  18329000                                                                                  <---------AHL20(1)                                                                                  <---------ARR11(3)                                                                         <---------ICU4                                                                         --------->YAB1                                                                      --------->YAB1                                                                  --------->AHL20(2)                                                                  <---------AHL20(2)                                                                 --------->AHL20(2)                                                                 <---------AHL20(2)                                                              <---------AHL20(2)  --------->AHL20(1)     --------->AHL20(2)                                      <---------AHL20(2)   --------->ARR11(3)<     <---------AHL20(2)                                      --------->AHL20(2)<---------GLK1(2)    < --------->AHL20(2)                                      <---------YAB1 <---------YAB1  <-----------GT1 <---------AHL20(2)                                     --------->AHL20(2)  --------->YAB1   <------- -------->AHL20(2)                  <----------DOF2     <---------AHL20(2) --------->At4g35610   <--- ---->GT1                    <---------At4g35610     --------->TOE2(3)<---------ICU4   <-----------GT1 -DOF2<---------AHL20(2)     --------->At4g35610  ----------->RAV1(1)<---------ATHB12<---------AHL20(2)   tataaaattaaataaacttaagctagttttcttctgccctttggagtttggacaacattaaaattaaataaatcatcatcagaatatttttatctctttt  18329100                                   <----------DOF2                    <---------AHL20(2)                                  --------------->AGL15             --------->AHL20(2)                                ---------->ID1                      <---------AHL20(2)                             <----------DOF2                      --------->AHL20(2)    --------->ZAT6                    <---------HSFC1(2)                            <---------AHL20(2)<---------YAB1                    --------->At4g35610                 <---------AHL20(2)        -------->HAHB4                    --------->HSFC1(2)                  --------->AHL20(2)  --------->YAB1                    --------->HSFB2a(1)            <-------TEIL --------->AHL20(2)<---------ICU4                    <---------HSFB2a(1)    --------->AHL20(2)   <---------AHL20(2)--------->YAB1   <---------ARR11(3)        <---------DAG2--------->YAB1     --------->AHL20(2) --------->ICU4 ---------DAG2      <---------At4g35610--------->AHL20(2)    --------->AHL20(1)<--------HAHB4 ----------DOF2  <------ZmHOX2a(1)=================================================================== ---DOF2 <----------DOF2  ------>ZmHOX2a(1)<---------AHL20(2)<---------AHL20(1)<---------ICU4 --------GT1 --------------------->WRI1<---------AHL20(2)   --------->AHL20(2)--------->ICU4   tactttatcttctttcttaggaagcttcctacttttcctttttaattaaaacatacatataaatatatatatatatatgcataattatgaacactctatt  18329200                                                                              --------->AHL20(1)              --------->AHL20(1)                                              <---------AHL20(1)              <---------AHL20(2)                             --------->AHL20(2)   <---------YAB1              <---------YAB1                                 <---------AHL20(2)  <---------AHL20(2)             --------->YAB1    <---------ARR14(2)    <---------ATHB12         <---------ARR11(3)             --------->AHL20(2)--------->ARR14(2) <---------AHL20(2)    --------->TOE2(3)            <---------------AGL15             --------->AHL20(2)      <---------ARR11(3)          --------->YAB1   --------->YAB1     <---------AHL20(2)      --------->ARR11(3)            -        --------->AHL20(2)----------->GT1    <---------AHL20(1)   <---------AHL20(2)                <  ---------->DOF2 ----------->GT1            --------->AHL20(2)  <---------AHL20(2)    <---------AHL20(2) ===========================MADS_MADS        <---------AHL20(2)  --------->AHL20(2)<---------AHL20(2)   aactgaaagttttaataatattggaaaaatgaaaatttgcaatctaatttttttaatcaatttttaatttaaaatctcaatatttttattttttttatcc  18329300                              <---------WOX13(1)                            <--------ATHB1                            --------->ATHB51                            --------->ATHB12                            <---------ICU4                            -------->HAHB4                           --------->ICU4                           <---------ATHB51                           <---------YAB1                         --------->YAB1                        --------->AHL20(2)                       --------->AHL20(2)          <---------ATHB12                       <---------AHL20(2)        --------->WOX13(1)                       <---------AHL20(1)   --------->ICU4                       --------->AHL20(1)   <---------YAB1                   --------->AHL20(2)     --------->YAB1                  --------->REM1(1)             <---------WOX13(1)          <---------YAB1                 --------->HSFB2a(2)           --------->ATHB12<---------AHL20(2)  <---------YAB1           <---------HSFB2a(2)          <---------YAB1<---------AHL20(2)<---------ICU4            <----------DOF2             ----- -------->AHL20(2) <---------AHL20(2) <---------AHL20(2)      <---------ARR14(2) <---------ARR14(2) ---------AHL20(2)--------->AHL20(2)  <---------YAB1          --------->ARR14(2) --------->ARR14(2)   aaaaaattagaaatgatagatttaatttaataattgattttttattattattaatcaatgttcaaatatgctttctacaaccatataccgaaggggtcct  18329400                                                                                            ---------                                                                                         ---------->DOF2            <---------MYB46(3)                                    <------MYB46(1)   <---------ANAC46          <---------At4g35610                                     <------MYB83      ----------->GT1          <-------GAMYB    <---------At4g35610     <---------MYB52(1)    <---------GLK1(1) ---------- ->ZmHOX2a(1)    <---------YAB1          <---------ZAT6          --------->MYB59    <---------ZAT6   caaaccagtttcagttgttatcaatggacagatgttactagtagagctaaaccggtagtacaatagttcggtttgatatcagagttgtgttaaaagttaa  18329500  Previous    Next  AGI:  At3g49390.1    Description:  CID10; RNA binding / protein binding. similar to CID11, RNA binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G32790.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48581.1); contains InterPro domain Ataxin-2, C-terminal (InterPro:IPR009818); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 18325547    to: 18328983    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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