Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                            --------->ANAC58                          --------->ANAC58                      ------>ZmHOX2a(2)               --------->LBD16                    ---------->DOF2              --------->ANAC46             --------->DEAR3(1)           <---------ATHB12     <-------             <---------LBD16               <---------ETT(2)            --------->ANAC58      --------           <---------ARR14(2)              --------->ETT(2)            --------->ANAC46      <-------           --------->ARR14(2)              --------->WRKY38(1)         --------->ANAC58      --------   <---------YAB1   <---------ARR11(3)     --------->WRKY12         <---------ZAT18        <------ZmHOX2a(1)   agtttatagttgctatccgcatgatcccaagcacaaaccctctcgtcgacccaaaagatgtgccacttagaccactcaattgaatcaatataaggagctt  18315000                                                                         --------->ATHB12          <-                                                                        <---------YAB1             --                                                                     --------->ICU4             <----         ------>ZmHOX2a(1)                                      <------MYB46(1)                 ----- --HSFC1(2)                                                     <------MYB83              <---------ANAC46 ->HSFC1(2)                                                   <---------WOX13(1)          <---------ANAC55(2) --HSFB2a(1)                          <---------HSFB2a(2)   --------->ATHB12 --------->YAB1  ------->TEIL ->HSFB2a(1)                    --------->AHL20(2)      --------->YAB1  --------->ICU4   --------->MYB59   ctaacaatttcctataaaacaaaaatgaaaactataaattttagaagaatcaaacgaattatagattggtattgattattgataagagagttatgtatat  18315100                                        <------NtERF2                                       --------->LBD16                                     <------NtERF2                                     <---------LBD16                                     <---------------------WRI1                                    <---------ATERF1(1)                                    --------->ABI4(1)                                    ------>NtERF2                                   --------->RAP2.3(2)                                   <---------DEAR3(1)                                   --------->ATERF1(2)                                   --------->DEAR3(1)                                   <---------ATERF1(2)                                   --------->RAP2.3(3)                                  <------NtERF2                                  --------->ATERF1(1)                                  --------->RAP2.6(1)                                  --------->ORA47(2)                                  --------->RRTF1(1)                                  --------->RAP2.3(1)                                            ----                                  --------->DEAR4(2)                                            <----                                  --------->ERF1                                                <----                                 <---------ORA47(2)                                             <----                                 <---------RAP2.3(1)                                          -------                                 <---------ATERF1(1)                                       <------ZmHOX2a(2)                                <---------DEAR3(1)  --------->At5g28300                   <---------ARR11(3)                               --------->ATERF1(1) ----------->GT1                        --------->ARR11(3)                              <-----------HVH21    ------->GAMYB                        ----------->ARR10 --------ARR11(3)            <---------bZIP60(2)--------->MYB52(1)   <----------DOF2  ---------->DOF2 ------->ARR11(3)    --------->ANAC58--------->RAP2.3(1)         <----------DOF2     =============HOX2a_HOX2a -----AHL20(2)       --------->ANAC58--------->ATERF1(1)       ===================================HOX2a_HOX2a ---->AHL20(2)     <-----------RAV1(2)--------->DEAR3(1)       ------>ZmHOX2a(1)     <------ZmHOX2a(1)   aaatcttgaaacagaccagagccaggctatgaggtcgccgccggagagaacaacggtgaaaactcctctttctttgcaaaatttggaggaaagatcagcc  18315200          --------->At4g35610          --------->ZAT2          <---------ZAT2                                                                    <--------          <---------At4g35610                                                               <--------         <---------ATERF1(1)                                                           -------->HAHB4 --------->ARR14(2)                                                                    --------->YAB1 <---------ARR14(2)         --------->ATHB51                --------->ABI4(2)         <---------YAB1 ----->LBD16                <---------ICU4             <---------LBD16              --------->YAB1 -----ANAC46                --------->ATHB12       <-----------HVH21                <---------ICU4 -----ANAC58               --------->ICU4        ------>ZmHOX2a(1)                 --------->ICU4 -----ANAC58               <---------YAB1    <---------ALFIN1<------NtERF2       --------->YAB1 -->At4g35610 <---------ALFIN1           <---------ALFIN1   ------>NtERF2       <---------YAB1    <xx   gtgtatttggccagctccactgccatttcattatttgtcttgaacaccctcctcttcaccggtgccatctaattcgatgaagatgataatgatacttttt  18315300                   <---------ANAC58      --------------->AGL15                   <---------ANAC58     <---------ANAC58          --------->ARR14(2)                   <---------ANAC46     <---------ANAC58          <---------GLK1(2)           -------     <---------At4g35610            <---------ANAC58              <---------ARR14(2)          -------  <---------At4g35610               <---------ANAC58             <------ZmHOX2a(1)            <------ -DAG2        <------MYB83 --------->ALFIN1          --------->DAG2                          -------- --DOF2       <------MYB46(1)   <------ZmHOX2a(1)   ---------->DOF2                        --------->AHL20(2) xxxxxxxxxxxxxxxxsmallRNA(fl3)<---------ANAC46---------->DOF2  <---------TOE1(3)    <----------ID1   gtgatgctgatgatgttggtatcgtacaagtggaggagacttgcttcttaaagggaaagtgagtgaaggattctttccaagtgaatgagacaaaaaaatc  18315400                                           --------->ATHB12                                      <---------ARR11(3) *TSS                        ----------->TBP -->ARR11(3)               --------->HSFB2a(2)                                        <----------DOF2 -->GLK1(2)        <---------YAB1     --------->ARR11(3)                          <---------CCA1(2) ---ARR11(3)    --------->GLK1(2)    --------->REM1(1)<---------HSFB2a(2)   ------->TEIL ->RVE1(1) ---------->DOF2 <---------HSFB2a(2)        --------->HSFB2a(2)  <---------CCA1(2)   tgttttcttctaagaaagaatatgattttctataaaactacatcttgatttgttttttggaagattagtatctaaatgtatcttatacctttcttctgtt  18315500                                                                        --------->LBD16                              <----------DOF2                          <---------HSFB2a(2)                          <-----------GT1                              --------->HSFB2a(2)                        <---------ICU4                           <---------ARR11(3)                 <---------DAG2                                  --------->ARR11(3)                 --------->TOE2(3)                               --------->ARR14(2)                <-        <---------ICU4 <---------YAB1    <---------TOE2(3)      <---------CCA1(2)            <-------   --------->ZAT14  --------->AHL20(2)<---------MYB52(1)   --------->ZAT6         --------->YAB1   --   <---------ZAT18<----------DOF2  ---------->ID1     --------->ANAC46 --------->ANAC46    ----------   tgtagtttactcattacaaccttttattattcctttcgtcgttatggatttattctacataacactatatcttccgaaacaaaatcaaaattttaaagga  18315600             <---------AHL20(1)             --------->AHL20(2)             <---------AHL20(2)          <--------ATHB1          -------->HAHB4          --------->YAB1          --------->ATHB51          <--------HAHB4         <---------YAB1         --------->ICU4         --------->AHL20(2)         <---------ATHB51       --------->YAB1    -------->HAHB4    --------->YAB1   ----------->GT1   <---------YAB1   --------->ICU4  <---------HSFB2a(2)       ------->TEIL --------ARR11(3)  --------->HSFB2a(2)<---------YAB1            --------->YAB1 --TOE2(3)<---------ICU4              <---------AHL20(2)   --------->AHL20(2)              <------ZmHOX2a(1) ------->ARR11(3)  --------------->AGL15    <---------CCA1(2) <---------YAB1     ------->MYC3 >DOF2<---------YAB1            ---------->DOF2 --------->HSFB2a(2)<---------ICU4<-------MYC3    ----   agataatgataataattaattctcgaattagcacaaaagttttattgtatctagacctcgatttattaataactccaataccatatgcttagaggaaaca  18315700                  ------->GAMYB                 --------->MYB46(3)                 <---------MYB52(2)           --------->MYB46(3)          --------->SPL7         ------>MYB46(1)         ------>MYB83       <---------MYB59                            --------->GLK1(1)      --------------->AtSPL3                     --------->ARR14(2)    --------->ARR14(2)                           <---------GLK1(2)     <---------ARR11(3)    <---------ARR14(2)                         --------->LBD16         --------->ARR11(3) <------MYB83   XXXXXXXXXXXXXXXXXXXXX>MIR850              <---------LBD16   --------->YAB1<----------DOF2 ------>DOF2--------->AtMYB61               --------->MYB52(1) --------->AHL20(2)         <------MYB46(1)   aaagcagaaccgaaccacaacaaactcatctaattctttctatacaaaccggaatttcaatacaataaaaaaacatcttctttttgtttgtttggtttag  18315800                                           <----------DOF2                            <---------ICU4                                          <---------DAG2                              -------->HAHB4                                    <---------------AtSPL8                            --------->YAB1                                    --------------->AtSPL8                           --------->ICU4       ------>ZmHOX2a(1)            --------------->AtSPL3                          <---------AHL20(2)       --------->At4g35610       --------->DAG2                                    --------->YAB1       <---------At4g35610      ---------->DOF2                                   <---------YAB1   --------->ARR14(2)----------->GT1<---------------AtSPL3                    ----------->GT1 <------   aattggttcctctgaaaacaaaatgcttaatacaaaaagaggtaccttttttttcagtcgatgtttttgtcttgaatcgacagtataataatgagattca  18315900  Previous    Next  AGI:  At3g49360.1    Description:  glucosamine/galactosamine-6-phosphate isomerase family protein. Identical to Probable 6-phosphogluconolactonase 2 [Arabidopsis Thaliana] (GB:Q8LG70;GB:Q9SG13); similar to glucosamine/galactosamine-6-phosphate isomerase-related [Arabidopsis thaliana] (TAIR:AT5G24410.1); similar to putative 6-phosphogluconolactonase [Brassica carinata] (GB:AAK50346.1); contains InterPro domain Glucosamine/galactosamine-6-phosphate isomerase; (InterPro:IPR006148); contains InterPro domain 6-phosphogluconolactonase; (InterPro:IPR005900) Range:  from: 18314031    to: 18315401    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g49370.1    Description:  calcium-dependent protein kinase, putative / CDPK, putative. similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT5G24430.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT2G46700.1); similar to calcium/calmodulin-dependent protein kinase CaMK1 [Nicotiana tabacum] (GB:AAL30818.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48591.1); similar to serine/threonine protein kinase pk23 [Lycopersicon esculentum] (GB:AAL87457.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domai Range:  from: 18315727    to: 18318891    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version