Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                              <------                                             --------->ZAT6                                   -------                                           <-----------GT1                                    <------                                        <---------ANAC55(2)              --------->YAB1       -------                                 ====================================================================                      --------->DAG2    --------->ANAC55(2)              <---------ICU4       -------           --------------->AGL15 <---------------AGL15                  <---------ATHB12      <------           ======================================MADS_MADS            --------->WOX13(1)     <-------     --------------->AtSPL8      --------------->AGL15          ----------->GT1         ---------->DOF2 ----------DOF2      ---------->DOF2  --------->AHL20(2)       --------->DAG2     --------->YAB1 -----CCA1(2) <---------YAB1    --------->YAB1                ---------->DOF2  --------->WOX13(1)  <-   atctttttttgtacttcttattgaaaagttgatatcaaaattaagtaacaccatatgaaaatgagaaagtgacaatcatgtctatcagaacaaagaacat  18229400     <---------------AGL15    --------->ZAT6   <---------ZAT18   --------->ZAT18 --->KAN4(2) ---KAN4(1) -->KAN4(1)                  ---------->DOF2 ---HSFC1(2)             --------->AHL20(2) -->HSFC1(2)            --------->AHL20(2) ====================MADS_MADS -->HSFB2a(1)           <---------AHL20(2) ---HSFB2a(1)    ----------->GT1 --KAN4(2)      --------->DAG2                                                  --------->WOX13(1) ---------DOF2 ---------->DOF2                                          <----------DOF2   tcttttgcactacatagtaaagtaaaataaataaagagagagagagagagagagagaccaagtctccttgccttcttttcatccatcagttactagtctc  18229500                                                                                             --------                                                                                            ------>NtERF2                                                                                         ------>NtERF2                                                                                         --------->LBD16                                                                                        --------->ANAC46                                                                                        --------->ANAC58                                                                                        --------->ANAC58                                                                                      --------->SPL7    --------->ATHB12                                                                 --------->ARR14(2)    --------->YAB1                                                                   <---------ARR14(2)    <---------ICU4                     --------->AHL20(2)                            <---------MYB52(1)   <------ZmHOX2a(2)    --------->ETT(2)              ---------->DOF2          <-----------GT1   <---------ATHB12     ------>ZmHOX2a(2) <------------CBF                    ----------->HVH21   <---------YAB1   <---------YAB1 --------->YAB1<----------DOF2             <-----------HVH21   gatcgatcattgttccacatatatgatcgacattttctcataaaaattgacctttagaaagaaatttagacaaaccagaagtcacccgttccgccacgat  18229600                                                                                               <-----                                                                                            <--------                                                                                            ---------                              <---------ANAC58                                           --------->ETT(1)                              <---------ANAC46                                           <---------ANAC46                              <---------ANAC58                                         <-----------HVH21                           --------->ALFIN1                                         <---------O2 <---                         <---------ANAC58                                           <---------TGA1a               --------->ARR11(3)                                                   <---------ANAC46               <---------ARR11(3)                                                   <---------ANAC58     <---------ARR11(3)  <---------ANAC58                                           <---------bZIP60(2)     --------->ARR11(3)  <---------ANAC46                      ------>ZmHOX2a(1)    <---------ANAC58 ---------->DOF2  ------------>CBF                       <-----------GT1          <-----------HVH21 ->ICU4    ---------->DOF2 <---------MYB52(1)      ------------>CBF              <-----------RAV1(1)   tacaaaagatgttcaaagttctcaataccgtggggtactacctatgtgagtttcccaattttctccttcatggttttgttattctgtcgtgtcggatttt  18229700                                                                       <---------MYB59                                                                      <---------ANAC55(2)                                                                      --------->ANAC55(2)                                                                    <-----------GT1                                                                    --------->AHL20(2)          <----                                                                --------->AHL20(1)              <----                                                                <---------AHL20(1)             <-----                                       <-------TEIL             --------->AHL20(2)           <-------                                --------->LBD16                 <---------AHL20(2)   <---------bZIP60(1) ----AHL20(2)                  <---------HSFB2a(2)             --------->AHL20(2)    --------->bZIP60(1) -ARR14(2)                     --------->HSFB2a(2)             <---------AHL20(2) <------ZmHOX2a(2) >ARR14(2)                    <---------LBD16              --------->AHL20(2)    --------->ARR11(3) --------GT1  --------->YAB1 <-----------GT1               <---------AHL20(2)    <---------ARR11(3)   aacgacttctgttcattcgtaactgtgttttttcccgaacatacatctaaaactctcagattaaaataaattacataactcaagatcatgtcatttttca  18229800                     ---------->DOF2                                     --------->WOX13(1)                ------>ZmHOX2a(2)                                      --------->ICU4              --                =============================HOX2a_HOX2a               <---------YAB1            ----               <------ZmHOX2a(2)                                <---------YAB1             <---------YAB1               ==============================HOX2a_HOX2a        --------->ICU4             --------->ICU4              <---------ARR11(3)                             --------->AHL20(2)         <---------AHL20(2)              --------->ARR14(2)                <-----------RAV1(1) <---------ZAT6      <---------YAB1   <-----------GT1<-----------HVH21      ----------->GT1     <---------AHL20(2)         --------->AHL20(2) -----TOE1(3) --------->ARR11(3)      <------ZmHOX2a(1)    --------->CCA1(2)          --------->CCA1(2) -----TOE2(3) --------->AGP1       --------->DAG2         <---------ARR11(3)         --------->ARR11(3) ------RAV1(2)<---------ARR14(2)  ---------->DOF2         --------->ARR11(3)         <---------ARR11(3) ----GT1     <---------GLK1(1)<-------TEIL  <---------GLK1(1)<---------YAB1      ---------->DOF2 <---   ggttgtaactgtttgagatctgtcaaagtagattcaaaaaggatggatatatgttgcaaagatataattagtgatcattcaaaaaaagatataattagtg  18229900                                                  <-------TEIL                                                 --------->CCA1(2)                                                 --------->GLK1(2)                                                 --------->ARR14(1)                                                --------->ARR11(1)                                                <---------ARR14(2)         <---------ARR11(3)                     --------->ARR14(2)         --------->ARR11(3)                     <---------GLK1(2)      <---------GLK1(2)                        <---------HSFB2a(1)   --------->HSFB2a(2)                         <---------HSFC1(2)   <---------HSFB2a(2)             <---------ANAC58           <---------ZAT14        <---------At4g35610 -------->P            <---------ARR11(3)      --------->HSFC1(2)               --------->ALFIN1 <--- ---->ZmHOX2a(2)       --------->ARR11(3)      --------->HSFB2a(1)           --------->DAG2     <---- ----->ARR11(3)       <---------ALFIN1        ----------->ARR10      <----------DOF2 <------NtERF2 ------ARR11(3)  <-----------GT1   <---------ANAC58    <----------DOF2      ---------->DOF2     <----   atctaccagaagctcttatttgccacatcttgtcattccttcccatagaagattcggctttgacttcagtactttcgaaaaagtggcagcatctatttgc  18230000        --------->ARR11(3)        <---------ARR14(2)        <---------ARR11(1)                      <---------ANAC46        --------->ARR14(2)                    --------->MYB52(1)        <---------ARR11(3)                   ------>ZmHOX2a(1)       <---------ARR14(1)            --------->YAB1       <---------CCA1(2)           --------->ARR11(3)       ------>MYB83                <---------ARR11(3)       ------>MYB46(1)            <---------CCA1(2)  ---------->DOF2     <---------MYB59        --------->ZAT14  ----------->HVH21 -------DOF2                <---------ZAT14  ----------->TGA1 -----ANAC58         ----------->TGA1--------->TOE2(3)                            <-------GAMYB -----ANAC58         ----------->HVH21     <---------ICU4 --------->CCA1(2)      <---------ANAC46   tttcagaccaaatcttgagtttgatgacgctgtagtatatcttaatcctgacggagaaagaaatgagacaatatttgagaatttcgttgatagagtattg  18230100                                                                               <---------GLK1(1)                                                                               --------->GLK1(1)                                                  <-----------GT1   --------->ARR14(2)                                              --------->ARR11(3)    <---------ARR14(2)                 ------>ZmHOX2a(1)          ----------->ARR10       ------->TEIL                    <      ----------->GT1      <---------ARR11(3) <---------ARR11(3)   <---------CCA1(2)               --   <---------AtLEC2<---------ATHB12        ------>NtERF2 ------>ZmHOX2a(2) <---------TOE1(2)     <---   agtttgcagggtgattatcctatcaacaagttctctctaacatgccgagattttactgatccaacttgtgtatctcgttggatatcaaatgtgatggaac  18230200           ------>ZmHOX2a(2)                                               --------->ANAC46          <------ZmHOX2a(2)                                   <---------ARR11(3)         --------->ARR14(2)                                   --------->ARR11(3)         <---------ARR11(3)                                  <---------GLK1(1)         --------->ARR11(3)                                  --------->GLK1(1)         <---------ARR14(2)                                  <---------CCA1(1)         <---------AGP1                                      --------->RVE1(1)        <---------CCA1(2)                                    <---------RVE1(1)        <---------ARR14(1)                                  <---------ARR11(3)    <---------ARR14(2)                                      <---------ARR14(2)          --------->At4g35610    --------->ARR14(2)                                      --------->ARR14(2)          ----------->RAV1(2)   <---------GLK1(1)          <---------ANAC46              --------->ARR11(3)          <---------At4g35610 ------NtERF2               <---------ANAC46              --------->LBD16  --------->ANAC58 ------->LBD16   ------>ZmHOX2a(2)                     ------>NtERF2       --------->ANAC58 ------LBD16   <---------ARR11(3)          <---------------AtSPL8<----------DOF2     <-------TEIL   gcggggtatcggatcttgatctacgttgtattgtgtattgggataatggtaccatgcctccagatatctttgtgagcaaggcactggttcatctgagaat  18230300  Previous    Next  AGI:  At3g49150.1    Description:  Identical to Putative F-box/LRR-repeat protein At3g49150 [Arabidopsis Thaliana] (GB:Q9M3B7;GB:Q9SMV1); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G59240.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63564.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain 60 kDa inner membrane insertion protein; (InterPro:IPR001708); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 18229843    to: 18232903    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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