Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            --------->KAN4(2)                                         <---------HSFB2a(1)                                         <---------KAN4(1)                                         --------->HSFB2a(1)                                         --------->KAN4(1)                                         --------->HSFC1(2)                                        <---------KAN4(2)                                    --------->HSFC1(1)                                    --------->HSFB2a(2)                                    <---------HSFC1(1)                                    <---------HSFB2a(2)                                       -------                                   <---------LBD16                                            ------>ZmHOX2a(2)                               ------>ZmHOX2a(1)                                             --------                              <---------------AGL15                                         <--------         <-----------GT1      --------------->AGL15                                ------>ZmHOX2a(2)    <----------DOF2          <-----------------AGL2                               <------ZmHOX2a(2) ----->AHL20(1)              ----------------->AGL1                              --------->ARR11(3) ------AHL20(1)              <-----------------AGL1                              <---------ARR11(3) ------AHL20(2)              ----------------->AG                            --------->ANAC58<------- ---->AHL20(2)            <----------DOF2<---------HSFC1(2)                  --------->ANAC58-------- ---->YAB1         <-----------GT1----------->RAV1(2)             --------->AHL20(2)        ---------   atattcctttgtttccagttttctccctctttcctcttctggaacattctcttcgtttaaacatcggattaatttcgacaagcgatcttccatagatcgt  18197600                                                                                     ------>ZmHOX2a(2)                                                                                     ================                                                                                    =================                                                                                    --------->GLK1(1)                                                                                    <---------GLK1(1)                                                                                    <------ZmHOX2a(2)                                                                                   --------->AGP1                                                                                   <---------AGP1                                                                                   --------->ARR11(3)      --------->LBD16                                                              <-----------ARR10     --------->ANAC46       <<<<<<<<<MYB2                                          <---------ARR11(3)     --------->ANAC58     <------MYB83                                             --------->ARR14(2)     --------->ANAC58     <------------------------ANAC81                       --------->HSFB2a(2)    <---------LBD16       <------MYB46(1)                                  <---------HSFB2a(1) ---->GT1  <---------ARR11(3)                                              --------->HSFB2a(1) ------->AtSPL8   ----------->GT1                                          --------->HSFC1(2) -ARR11(3) --------->ARR14(2)                                       <----------DOF2<---------ARR14(2) --------AtSPL8   --------->YAB1                           ------------>AtMYB77 <---------HSFB2a(2) ------->AtSPL3 <---------MYB52(1)             ------>ZmHOX2a(1)<---------GLK1(2) <---------CCA1(2) >ARR11(3) <---------ARR14(2)       ------>ZmHOX2a(1)     ----------->HVH21<---------HSFC1(2)      --   acataatccgcaatatccgatagtaatttggttttctccttcgcctctccttccaattcactgacagtttctttagaaacttccagatctctcttcattt  18197700       <---------ICU4       --------->YAB1                 <---------ZAT18      <---------ATHB12              <---------At4g35610              <---------ANAC46      <---------YAB1         --------->At4g35610                     <---------O2    --------->YAB1           <---------At4g35610              <---------CCA1(2) =====HOX2a_HOX2a            <---------ZAT2                   <---------At4g35610      --------->ZAT14 =====HOX2a_HOX2a            --------->ZAT2                  ------->TEIL              <---------ZAT18 ---->ZmHOX2a(1)   --------->HSFB2a(2)--------->ZAT18      <-------TEIL     --------->MYB46(3)   cctctctaatcataacctcttccaaaattccagcttcaagctcactatttcttcgcctaagtgcatctctctcgtggaacaactcatggttcactcttat  18197800                                     <---------ANAC46                                    <---------LBD16                                  <---------ANAC58                            --------->ARR14(2)                            --------->ARR11(3)                            <---------ARR11(3)                            --------->GLK1(2)                            <---------ARR14(2)                            >>>>>>>>>>>>>>>>>LFY                           --------->GLK1(1)                  <---------TOE2(3)            <---------MYB52(1)    <---------ANAC58           --------->MYB52(1)   --------->ETT(2) <---------ATHB12          <---------GLK1(1)    ---------->DOF2     ----------->GT1               ---   caaatcagttctccgataactcgcttcgaatatctggcttcggagactgagaaagttagagtctaacgaagagtgattccattgtcgaaagtcatggtct  18197900                        <---------MYB52(1)                       <-------GAMYB                                       <------------CBF                      <---------MYB46(3)                              <---------AtMYB61              --------->GLK1(2)       <----------DOF2              ----------->HVH21              <---------ARR14(2)   <---------ARR11(3)            --------->bZIP60(1)          <------ZmHOX2a(1)      <---------MYB52(1)              <---------bZIP60(1)       --------->CCA1(2)<--------P<---------CCA1(2)           <---------YAB1<---------WOX13(1) ------>ZmHOX2a(2)    ----------->GT1 --------->TOE2(3)     --------->YAB1<---------MYB46(3) ================HOX2a_HOX2a  <---------LBD16 <-------TEIL --------->ICU4 --------->ATHB12 ------>ATHB12--------->ARR14(2)--------->LBD16            <---------YAB1<---------YAB1             <   tgatcggagataggagtatccgagcggttgattccggtatctttaacatccatgagaagtgatgatgatgtgatggtgattgatgaaattctccataggt  18198000                                                   ----------->HVH21                                                 <---------At4g35610                                                 --------->At4g35610                                               <---------WRKY38(1)                                               <---------WRKY12                                               <---------ZAT14                                               --------->ZAT14                                           --------->ZAT6                                         --------->MYB52(1)                                         ------>MYB46(1)                                            <                                         ------>MYB83------------>CBF       --------->ARR14(2)      <                                        --------->MYB55(1)                  <---------ARR14(2)      <                --------->At4g35610    <---------MYB59                      <---------ARR11(3)     <<                <---------At4g35610    <---------MYB111(1)    ---------->DOF2               <--------     ---------->DOF2                   <---------MYB46(2) --------->YAB1    <---------ARR11(1)     <<  --------->ANAC58                  <-----------GT1------->GAMYB  ----------->GT1      <----------DOF2  --------->ANAC58           <-----------GT1------->GAMYB --------->TOE2(3) --------->ARR11(3)     <- ------ZmHOX2a(1)       <---------YAB1--------->ANAC55(2)----------->GT1   <---------CCA1(2)<--------   gaggacgcaaagaatgtctgatgactctgatttgccatttacctaacagtcaactgacaatgttaaaagagtaaaacatatcttcaacgctttacttttt  18198100                                           --------->YAB1                                           <---------ICU4                                      ------------>CBF                                     --------->ANAC46  ------>NtERF2                      --------->ANAC58  <------NtERF2                      --------->ANAC58 --------->LBD16                   --------->MYB52(1)                                 <----------DOF2 ---------ANAC58          <---------ANAC55(1)                                         --------->TOE2(3) ---------ANAC46          <---------ANAC58--------->ICU4                           --------->ARR11(3) ---------ANAC58          <---------ANAC58<---------ATHB12                   ----------->GT1 <<<<<<<E2Fc              <---------ANAC46<---------ATHB51                   <------MYB83 --DOF2      --------->ANAC58 --------->AHL20(2)                             <------MYB46(1) <<<<<<<E2Fd --------->ANAC58 ----------->TBP        <---------ANAC46     <------------CBF --------LBD16            <---------ANAC55(2)   ------->TEIL             --------->ATHB12 -DAG2---------->DOF2     --------->ANAC55(2)<---------YAB1    ---------->DOF2     <---------ARR11(3)   tggcgggcaaaaggaacgacatcgtattacgtataaataacgcaattatgaatttatgtgtataacaaaggagaaagattggtaagaactttaaacatgt  18198200                                                                              <----------DOF2                                                      <-----------RAV1(2)    <---------------AGL15                                              <---------------AtSPL3         --------------->AGL15                                             <---------ANAC46               <-----------------AGL1                                      <---------At5g28300         <---------AHL20(2)                                  <---------ICU4     --------->TGA2(2)      ----------------->AG                                  --------->ATHB51  <-----------HVH21       ----------------->AGL1                                  --------->YAB1   --------->ANAC58       <---------CCA1(2)                                  <--------HAHB4   --------->ANAC46   <-----------GT1                                 --------->ICU4   ------->TEIL  <---------AHL20(2)                    <---------At4g35610   ----------->HVH21    <---------AHL20(1)              ------                    --------->At4g35610  <-----------HVH21     --------->AHL20(1)    --------->At5g28300       ----------->GT1           --------->AHL20(2)--------->ANAC58 <---------AHL20(2)      <--------    --------->MYB52(1) <-------TEIL <---------YAB1<-------TEIL<---------CCA1(2)     ----------->GT1   ttaaacaaatggatactaagtaagcttcatttcgaataattactgtgacatgtacgtcaggcttatatattttttcatacctttaggggtaaatttacaa  18198300                    ----------->GT1             --------->ATHB12             --------->ATHB51             <---------ICU4             -------->HAHB4             <--------ATHB1            <---------AHL20(2)                                                        <---------ATHB12            --------->ICU4                                                           <---------ARR14(2)            <---------ATHB51                                                         --------->ARR14(2)            --------->AHL20(2)                                           <---------MYB52(1)            <---------YAB1                                             --------->ATHB12        <-----      --------->TOE2(3)                                               <---------YAB1--------->WOX13(1)      >>>>>>>>>RAP2.2                                        ----------->GT1      <-----------------AGL3    --------->GLK1(2)----------->GT1             ---------->DOF2    <-----------GT1<---------------AGL15 ---->DOF2 <---------AHL20(1)                <----------DOF2--------->DAG2        ----------------->AGL1 ---GT1   --------->YAB1             <---------YAB1        ---------->DOF2        <-----------------AG   agtgacaatctaaaataattgggagttaaaaatagcaatattgttgtctttcaaagaaggcaaaagtaaatcaccattggttttgccaatcttggatagc  18198400                                                                 <---------ANAC58                                                                 <---------ANAC58                                                               ------->TEIL                                                               --------->ARR14(2)                      <---------TOE2(3)                        <---------ARR14(2)                <------MYB46(1)                             --------->O2                <------MYB83                                <---------ANAC46                <---------ANAC55(2)                         <---------O2               --------->MYB59                             <------NtERF2           --------->ATHB12                               ------>NtERF2        <---------ANAC58                   <---------TOE1(3)<---------ANAC55(2)        <---------ANAC58       <---------HSFB2a(1) --------->ATHB12        ----------->GT1        --------->HSFB2a(1)<---------YAB1 <---------ANAC46--------->MYB46(3) ----STY1(2)   --------->MYB111(1)         <---------TOE2(3)--------->ANAC55(2) -------->P          <   tagatgaagagcgtgattaggtatgaggttgcaatcttccattttcaggtttgtcattggcgacgtatcgtgtccattcgctaaccactctctaatcgct  18198500  Previous    Next  AGI:  At3g49055.1    Description:  protein binding. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24560.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49438.1); contains InterPro domain t-SNARE; (InterPro:IPR010989) Range:  from: 18196151    to: 18197953    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g49060.1    Description:  protein kinase family protein / U-box domain-containing protein. similar to protein kinase family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G45910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO49439.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain U box; (InterPro:IPR003613) Range:  from: 18198199    to: 18202920    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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