Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                             ------->TEIL                                                                                           <---------ARR11(1)                                                                                           <---------ARR14(2)                                                                                        <---------ANAC55(2)                                                                                        --------->ANAC55(2)                                                                                        --------->ANAC58               --------->YAB1                                                           --------->ANAC58               ----------->GT1                                                         <-------TEIL       <---------GLK1(1)                                                              --------->ARR14(1)       --------->GLK1(1)                                                              --------->CCA1(2)   --------->ANAC58                                                                  <---------ARR14(2)   --------->ANAC58                                      --------->CCA1(2)           --------->ARR14(2) ------>At4g35610      --------->TOE2(3)                <---------ARR11(3)           --------->ARR11(1) -------At4g35610      --------->TOE1(3)            ---------->DOF2        ----------->GT1 --------->ARR14(2) -----GT1     <---------ATHB12          ---------->DOF2 --------->ARR11(3) <---------ZAT6  --------->GLK1(2)   agctcaaggaaatcaaatgataaaacctcaaacttcaaaaacaaaagaccatctcaaagatatagagaacataaatagagtaaaacagatacgaatcttg  18179200                      <---------AHL20(2)                 <---------YAB1           <------ZmHOX2a(2)          <---------ARR11(3)                   ----------->HVH21          --------->ARR11(3)       --------->DAG2                        ---------->DOF2         --------->YAB1          ---------->DOF2      --------->TOE2(3) --------->YAB1         ------      ---------->DOF2--------->AHL20(2)      ----------->GT1     ---------->DOF2 --------->HSFB2a(2)   aagtatttcaaagatcactcttattaaatctatactaaaggtgagacttgtgacaatctcaaactcttaaagaatcaaagtttcgagagtttgtatgcac  18179300                                                       --------->DAG2                                                   <----------ID1                                           --------->AHL20(2)                                         ------>MYB46(1)                                         ------>MYB83 ---------->DOF2           ----------->GT1           ------------------------>ANAC81           --------->YAB1        --------->YAB1    --------->ANAC46        ------->GAMYB           <---------YAB1   --------->MYB52(1)              <-----------GT1  <--  --------->TOE2(3)      <------ZmHOX2a(1)<---------ATHB12           ---------->DOF2 <---------ICU4 ->TEIL--------->ZAT6  <---------TOE2(3)--------->WOX13(1)  <-------TEIL ----------->GT1      <------ZmHOX2a(1)   attacattaacagtcgtaatacagtaaggatgttatcaaaaccaatcaaataaacgaaaagtttcatcactgaaagtgtaatattactcattccaaggac  18179400                                            ------->GAMYB                                            <---------SPL7                                           --------->MYB46(3)     --------->YAB1                                           <---------MYB52(2)     --------->AHL20(2)                                          --------->At4g35610<------ZmHOX2a(2)                      --------->YAB1     --------->MYB52(1) --------->AGP1              --------->ANAC46  <----------DOF2 ---------->DOF2      <---------ATHB12    --------->At4g35610          --------->ANAC58 -------ARR14(2) <---------ATHB12<-----------GT1    --------->AHL20(2)                  --------->ANAC58   gatactttctgcaaaatcaataaagcataacaaaataacaaatcaacggacgatttatatcagatcaataaaactcgaaatgaacaaaacaaggaactta  18179500                   <---------At4g35610                  ----------->RAV1(1)                --------->At4g35610            --------->ZAT2            --------->At4g35610          <------ZmHOX2a(1)       <-----------RAV1(2) --------->ANAC46     --------->ANAC58                                    -       =======================RAV               --------->ANAC58                              -------  --------->GLK1(2)--------->At4g35610      --------->ANAC58     --------->ANAC46        <---------ARR11(3)  --------->ARR11(3)      --------->TOE1(2) --------->ANAC58     *TSS                    --------->ARR11(3)  <---------ARR11(3)    --------->ZAT14     --------->ANAC46   --------->ANAC46         --------->YAB1   gaaaaatctacaggagctagcagcagaacacacgatgagagaaaacaagcaagaaccctacttatacacaaaacgagacagtagcaacgaagataatcag  18179600                                                    <---------ATERF1(1)                                                   <---------DEAR3(1)                                                  --------->LBD16                                                  <---------LBD16                                                 <---------ANAC58                                     <---------ARR14(2)  --------->ANAC58                   --------->GLK1(2)  --------->ANAC58                   --------->ARR14(2)        <---------ZAT14  <----------ID1      --------->ARR14(2)         <---------ANAC46                              ------ -------->CCA1(2)     <---------ARR14(2)         <---------ANAC58    <---------CCA1(2)       <------- -->YAB1        <------ZmHOX2a(1)   <---------GLK1(2)<------NtERF2   --------->GLK1(1)       <-------   agagacgacaagtagagaggagcgaaaactcacagagagaatcgtcttcttgcgcggctctagactgaagtatatccaagtctagggtttacgagcttta  18179700                                              <---------PCF2                                             ----------->TCP11(1)                                            <---------MYB46(3)                                           --------->ALFIN1                                    <-----                                          <---------MYB52(1)                                <--------       <---------ARR11(3)                <---------DEAR3(2)                                 <--------       --------->ARR11(3)               <---------DEAR3(1)                                  <--------   --------->ZAT14                      <---------MYB46(3)                       <---------ANAC46 --->AHL20(2)                   --------->ATHB12----------->GT1                  <---------ANAC58 --------AGL15        <-----------GT1   --------->MYB55(2)--------->AHL20(2)     <---------ANAC58 ---DOF2 <---------MYB59       <---------MYB52(1)<------NtERF2       <---------YAB1       --------->ARR11(3)   aatagtgaagacctaaactcagtttaactattcgttattgggccggtgggccgaaaaaaaaaaaatcaatttttattctttgggcttgtaaatgtcttgg  18179800                                       <---------ARR14(2)                                       --------->ARR14(2)                                 --------->ZAT2                                 <---------ZAT2                              <---------LBD16                              ------>ZmHOX2a(2)                            <---------ARR14(2)                   <---------TOE2(3) ----TOE1(2)                --------->ARR14(2)                   <---------TOE1(3) -ANAC58                --------->MYB52(1)                    <---------MYB52(1) -ANAC58         ----------->GT1--------->LBD16             <---------YAB1------->TEIL         <----- -ANAC46     --------->ATHB12<------ZmHOX2a(2)        <---------YAB1     <---------CCA1(2)  <--------   gtttggattttggtttcattggaaaaaaacgatccggctcggatttgatcactgtttttattctgttagggttttgtatctagcctaggtgattctttta  18179900                                                   <---------CCA1(2)                <---------DEAR3(1)                                                 --------->YAB1                    <---------ZAT2                                                <---------YAB1           <---------ANAC46          <-                                              --------->YAB1          --------->GLK1(2)<---------ANAC58                                          <---------YAB1             <---------ARR14(2)<---------ANAC58                                      <-----------TGA1               <---------GLK1(2)<------NtERF2<-                                     <---------bZIP60(1)        --------->ZAT2     <---------At4g35610 <---------ATHB12    --------->ICU4  --------->bZIP60(1)        <---------ZAT2     --------->At4g35610 ------GT1        <---------AHL20(2)<-----------STF1<-----------ARR10--------->ARR14(2)<---------ANAC46 --DOF2      ----------->GT1     ------->TEIL--------->ICU4--------->ARR11(3)    <---------RAP2.6(2)   ctaatcaaacacaagtggatataattttgaagatgaatctcgtcaccattatcatatctaagctctagctggattctgtgtgttcggctgcgtttgcatt  18180000        <---------ZAT6                                                                    <---------ANAC58        --------->ALFIN1             <------------CBF          <----------ID1             <---------ANAC58 --------TOE1(3)         --------->ARR11(3)                  <---------------AtSPL8       <---------ANAC46 --------TOE2(3)         <---------ARR11(3)            --------->ANAC46            <----------DOF2   tgaggttgaagtgttagtaatctcaaggatttttagcaaaattgatgtctctgttaaacgaaaatggaacaaaaatggtatgtttctttgtttcgtctat  18180100  Previous    Next  AGI:  At3g49010.1    Description:  ATBBC1 (breast basic conserved 1); structural constituent of ribosome. Identical to 60S ribosomal protein L13-1 (RPL13B) [Arabidopsis Thaliana] (GB:P41127;GB:Q42280;GB:Q8LFC4); similar to 60S ribosomal protein L13 (RPL13D) [Arabidopsis thaliana] (TAIR:AT5G23900.1); similar to 60S ribosomal protein L13-1 (Cold-induced protein C24A) (GB:P41128); contains InterPro domain Ribosomal protein L13e; (InterPro:IPR001380) Range:  from: 18177754    to: 18179565    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g49020.1    Description:  F-box family protein. Identical to FBD-associated F-box protein At3g49020 [Arabidopsis Thaliana] (GB:Q9SMT9); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G04230.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 18180064    to: 18181645    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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