Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <---------At4g35610                                          --------->YAB1                                --------->At4g35610                                       <---------GLK1(1)                      --------->YAB1                                    --------->LBD16                          <-------TEIL                                   <---------HSFB2a(2)                    --------->GLK1(1)                                  <---------LBD16                         <---------RVE1(1)           <-------TEIL         --------->ARR14(2)                       <---------ARR14(2)        ------>MYB46(1)    ----------->RAV1(2)                           <---------GLK1(2)        ------>MYB83       --------->At4g35610                           --------->ARR14(2) -------->YAB1             <---------At4g35610     --------------->AGL15 --------->ARR11(3) --->AHL20(2) --------->AtLEC2  <---------ARR14(2) <---------------AGL15 <---------ARR11(3) ------->ANAC81     --------->AHL20(2) --------->GLK1(1)          <----------DOF2--------->AHL20(2)   aatcaaaaccaaattcatccaaaaaaatcatctgaatccggaaatcaaaatttctcaattaagaagcgatttacagatattcataaattctgcttcccat  18172000                                            ----------->GT1                                       --------->AHL20(2)                                 <------MYB83           --------->ANAC46         <----------DOF2                              <-----------HVH21           --------->ANAC58       --------->HSFC1(2)                            --------->ALFIN1           --------->ANAC58       <---------HSFC1(2)                         <---------DEAR3(1)          <---------ZAT18        ------->TEIL                    --------->AHL20(2)  <---------HSFB2a(2)        --------->At4g35610<---------ARR14(2)      --------->CCA1(2)      ----------->HVH21        <---------At4g35610--------->ARR14(2)     --------->AHL20(1) --------->RVE1(1)    <------MYB46(1)   gtgattcttcagcacgcaaaacaaaaccagaaacgaagcttttaaatcgaaatatatgaaaacctcttaaaatacctcgacggtgttagggaaggtgaga  18172100                                                   <------NtERF2                                                  --------->ABI4(2)                                                  ------>NtERF2                                                 <---------ANAC46                                                <------NtERF2                                                --------->ATERF1(1)                                          ============================================bZIP_DOF                                          --------->REM1(2)                                         <                                          ---------->DOF2                                           -                                         ----------->HVH21                                        ---                                         --------->ALFIN1                                        ----                                       <---------ANAC46                                          <---                                       <---------ANAC58                     <---------ANAC58     <---           --------->LBD16             <---------ANAC58       --------->ARR11(3)                 ----           ------>NtERF2       <----------ARF1 <---------DEAR4(2)           --------->TGA1a      ----         <---------LBD16      <------NtERF2    <---------RAP2.3(1)          <---------ANAC58     <---  ------->GAMYB             <---------DEAR3(1)<---------DEAR3(1)            <---------TGA1a     <---- --------->ANAC58           <---------ANAC46  <---------RAP2.3(2)  --------->REM1(2)            <---- --------->ANAC58         <-----------HVH21  <---------At4g35610------>ZmHOX2a(2)               -----   gcaacgacatcgccgggtttgattccagcgtcggagacaaggcgtgaagcggcgcgttcgattagatcgtgaagacgcgcgtgagtgagattgaattttc  18172200           --------->ZAT2                                                                ----------->GT1  <-----------------------TaNAC69(2)                                                  <------NtERF2 --------->MYB52(1)                                                                 <---------DEAR3(1) ---------ARR14(2)                                                                <-----------HVH21 -------->ARR14(2)                                                               <---------ANAC46 ------>LBD16 <---------DEAR3(1)                                                 <---------bZIP60(1) ----->HSFC1(1)                                                                  <---------ANAC58 ------HSFC1(1)        --------->LBD16                                           --------->TGA1a ------------AGL15    <---------LBD16                                            --------->bZIP60(1) ----------->AGL15   ------>ZmHOX2a(2)                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----->HSFB2a(2)    <------ZmHOX2a(2)                  --------------------->WRI1<---------ANAC58 ------HSFB2a(2)<------NtERF2                          ------>ZmHOX2a(1)         --------->O2 -------------AGL1 --------->ARR14(2) <------NtERF2   --------->TOE1(2)          <---------O2 -----LBD16<---------ZAT2    <---------AHL20(2)  <---------ATHB12                <---------TGA1a  --- ------------>AGL1 <---------ARR14(2)------>NtERF2--------->YAB1                <--------------------   cagaaacggagagagctcggcgatcggggaattttttggcgacgttttccaataatcctgagagagtatcgctatccatggttacgtcggagagataaac  18172300                                                                               <---------ICU4    ----                                                                     <---------AHL20(2) --------->GLK1(2)                                                                   --------->AHL20(2)   <---------ARR11(3)           --------->YAB1                                        <---------AHL20(2)     <---------ARR14(2)          --------->ICU4                                        <---------AHL20(2) <---------ZAT14       --------->ICU4           ---------->DOF2                 --------->AHL20(2) --------->ZAT14     --------->MYB52(1)    --------->GLK1(2)                    *TSS --------->AHL20(2) --------->ARR14(2) ------>ANAC46       <------ZmHOX2a(1)                       --------->YAB1<---------AHL20(2)    ---- ---TaNAC69(2)   <------ZmHOX2a(1)                       <---------RVE1(1)------------>CBF  <--------   acgagagtaacgatgatgaggaaggagagaatgtgaaagcagagaagagagcaaatgcgatatttataaatttatattcaattactacagtatctgtgga  18172400                                 --------->YAB1                          <-------PIF5                          ------->PIF5                          ------->MYC2                          ------->MYC4                          <-------MYC4                          <-------MYC2                          ------->MYC3                          <-------MYC3                         <---------ANAC46                         <---------ANAC55(2)                                                   ------                         <---------O2                                                          <-----                         --------->O2                                                  --------->AHL20(1)                         <--------ABF1                                                 <---------AHL20(2)                         --------->ANAC55(2) --------->GLK1(1)                        --------->ATHB51                         <---------TGA1a    --------->ARR14(2)      <---------ICU4    <---------ICU4            =======================bZIP_DOF <---------GLK1(2)    --------->YAB1       --------->AHL20(2)            ---------->DOF2     <---------YAB1     <------------CBF--------->ICU4     <---------AHL20(2) ----->ANAC58       --------->bZIP60(1)     <---------ARR14(2)----------->GT1        --------->ICU4 ----->ANAC58       <---------bZIP60(1)  <---------ANAC46------>ZmHOX2a(2)        --------->AHL20(2) -LBD16----------->GT1   --------->TGA1a<---------At4g35610  <---------AtMYB61    <---------AHL20(2)-   agcaaaaaatggctaaaagatgatgccacgtgttatcatcgtagcggattttctattgatcgtgtggtcataatgttttcatttttaattattttgttaa  18172500                                                                               --------->LBD16    ---                                      --------->HSFC1(2)          <---------AHL20(2)       --------->ZAT14                                      <---------HSFC1(2)          --------->AHL20(2)       <---------ZAT14 <---------MYB46(3)                  <---------O2         <---------MYB46(3)  --------------->AtSPL3 --------->MYB55(2)                  --------->O2         ----------->GT1    <---------LBD16      --- --->MYB52(1)            <---------YAB1                  <---------AtMYB61 --------->ARR14(2)<------- ----DOF5.7(2)        ------>ZmHOX2a(1)                  --------->ALFIN1  <---------ARR14(2)------->TEIL -------->ALFIN1  <-----------GT1--------->DEAR3(2)   --------->ALFIN1<-----------GT1    --------->ANAC46   cggtgggagtcgctgatatatatccttacgattagaccgacgtttcggtttttgaagaggtggtttttttaatttcgattccggtacaaacactgaaccg  18172600                                        --------->ANAC58                          --------->ARR11(3)                          --------->AHL20(1)                           --------->ATHB51                        --------->ARR11(3)                             <---------ICU4             <-----------GT1 <---------AHL20(2)                        --------->AHL20(2)            --------->AHL20(2)          --------->ANAC58   <---------TOE2(3)        --------->AHL20(2)<---------ARR11(3)               <---------TOE1(3)        <---------AHL20(2)<---------AHL20(1)              <---------At5g28300     ----------->GT1    <---------ARR11(3)               --------->MYB52(1) ------>ARR14(2)        <---------AHL20(1)               <-----------GT1 ------>MYB52(1)        --------->AHL20(1)        ----------->GT1      <---------AHL20(2) ----------AGL1 <----------DOF2    <---------LBD16--------->YAB1  <---------YAB1 <------ZmHOX2a(1)   aaacggctagttaattaacttttgaaaatattttttttcggcaagcatgcgatagtaatttacggtttatgaattatttcataggaatttgaaatagttt  18172700                                                                                     <----------DOF2                                                                                <-------MYC3                                                                                ------->MYC3                                   <---------AHL20(2)                         <-------MYC2                                   --------->AHL20(2)                         ------->MYC3                                --------->AHL20(2)                     <----------DOF2 --------->WRKY45                             --------->TOE2(3)               <----------DOF2  <-------MYC3         <---------YAB1    <-------TEIL       <---------YAB1 <---------DAG2   <-------MYC4          < ------->TEIL   ---------->DOF2--------->AHL20(2)     <---------AHL20(2)      ------->MYC2    <------ZmHOX2a(1)   gtgtatgtattatcaaacaaaagaatagtttcattaaaaaaatagcctatgagtgtttaatcacttttagggcctttgcacatgtgtctttgactaggat  18172800                                                                                             --------                                                                                            <--------                                                                                  --------->AHL20(2)                                                                                  --------->AHL20(1)                                                                                  <---------AHL20(2)                                                                      ----------->GT1  >>>>>>>>>>WRKY38                                                                    >>>>>>>>>ARR2--------->AHL20(2)                   <---------TOE2(3)   --------->YAB1              --------->ATHB12    >>>>>>>>>>WRKY43                 ----------->HVH21    <---------AHL20(2)          <---------YAB1 <---------AHL20(2)               <---------ANAC58       <---------YAB1        --------->ICU4   <---------AHL20(1)             <---------YAB1  <-----------GT1         --------->MYB52(1)      <---------AHL20(2)  --------->ANAC55(2)    <---------ANAC46            <---------DOF5.7(2)     --------->AHL20(2)  <---------ANAC55(2) <---------MYB52(1) <---------YAB1     ------>ZmHOX2a(1)--------->AHL20(1) -----------GT1<---------ANAC58 <----------DOF2    --------->ARR11(3)<---------WOX13(1)>>>>>>>>>>WRKY26   tatcacgtttcgaagatgcttgacgttgtttatactttatattataaatagaagataacgtccttattttgattgttaataaattaaattgaccaaggta  18172900  Previous    Next  AGI:  At3g48990.1    Description:  AMP-dependent synthetase and ligase family protein. similar to 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT4G05160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62798.1); similar to putative acyl-CoA synthetase [Capsicum annuum] (GB:AAL29212.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15468.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) Range:  from: 18169732    to: 18172364    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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