Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              --------->AHL20(2)      --------->TOE2(3) <---------ZAT2 --------->At4g35610 --------->ZAT2                                          --------->ANAC58 <---------At4g35610                                     --------->ANAC46 -------->ANAC46            ----------->GT1              --------->ANAC58 ---->GLK1(1)             ---------->DOF2       <---------GLK1(1) -----GLK1(1)          --------->YAB1           --------->GLK1(1) --->ARR14(2)       --------->WOX13(1)     <-----------GT1                                   <------- ----ARR14(2)      --------->MYB46(3)    <---------AHL20(2)                    <---------ATHB12  <--- -ANAC46    <---------AHL20(2)          --------->AHL20(2)             ---------->DOF2       --------   accagcagcctaaatttatcaacaatcagaaagaaaaaacaatttaaacgatatccaacaagaaacaaaacacaaaagctaatgaagaacagagagatat  18162000                                                                                               <-----                                                                                               ------                                                        --------->TOE1(2)                      <-----                                                       <---------ANAC55(2)                    -------                                                       --------->ANAC58                      <-------                                                       --------->ANAC55(2)                  <-------TEIL         <---------At4g35610        --------->ARR14(2) --------->ANAC58                  <------MYB46(1)      <---------MYB52(1)        <---------LBD16        --------->ANAC46                  <------MYB83     <----------DOF2        ------>ZmHOX2a(1)         ------->TEIL                      --------->MYB59    --------->TOE2(3)       <----------DOF2         <---------SPL7                    --------->ARR14(2) --ARR11(3)                --------->TOE2(3)      <---------------AtSPL3              <---------ARR14(2) --------GT1            <---------ARR14(2)      <-----------RAV1(1)                   <---------MYB52(1) ->ARR11(3)             --------->ARR14(2) <----------DOF2                       <-----------HVH21 --   tacaaacctttagctcttcaagagtgaatcctttaccggctctgactttcatgttgtacgtaagagtctgagcatgtacaacaggtcggataggtccagc  18162100             --------->ARR14(3)             --------->ARR14(2)             <---------ARR14(3)             <---------ARR11(3)             <-----------ARR10             --------->ARR11(3)    <---------DEAR3(1)                                     ------>MYB83    <---------ANAC46                                       ------>MYB46(1) ----------->HVH21                                      --------->ANAC46 <---------SPL7                                         --------->ANAC58 ----ZAT2  ----------->ARR10                            --------->ANAC58 --->ZAT2---------->DOF2--------->TOE2(3)             --------->ANAC58 ----At4g35610<------ZmHOX2a(2)                       --------->ANAC46              ----------->GT1 ---->RAV1(1)<---------ARR14(2)                       --------->ANAC58             <---------TOE2(3) ----RAV1(2) --------->AGP1                    <---------ICU4    --------->YAB1    <---------YAB1 ------->ALFIN1------>ZmHOX2a(2)              --------->ICU4  --------->YAB1    --------->ICU4   agtgggacggggaaagatcttcacagccttattctgcctcgctgagtaaacattacacaccaaataatcaaattgagatgggattatggtaaaacttcta  18162200                                                                                       --------->MYB46(3)                                                                                      -------->P                                        ----------->HVH21                  <---------bZIP60(1)                                     <---------ZAT6     ---------->DOF2    --------->bZIP60(1)                           --------->AHL20(2)   <---------TOE2(3)       ----------->HVH21      <<<<<<                         --------->AHL20(2)     <---------YAB1       <---------ZAT6<---------MYB52(2)   ataaaaccatggcacataaaaccaaaaaaaaatatagtagtggtgacattaagatagcaaaagcagtagtagtggtgacattactactaaccaattcttc  18162300                   <-------GAMYB                   <---------ANAC46                  <------MYB83                  <------MYB46(1)                  <---------MYB46(3)                  --------->MYB52(2)                  --------->MYB55(2)                 --------->MYB111(1)                 <---------AtMYB61                                               --------->ATHB51                <--------P                                        --------->ATHB12              <---------ZAT2                                     <---------YAB1 <---------YAB1              <------MYB46(1)                        <---------------AGL15      --------->ICU4              <------MYB83                           <----------DOF2   <---------ANAC46       <---------AtLEC2                        <---------ALFIN1 <<<<<<<<<<<<<<<<<LFY     <----------DOF2 <<<TBF1    <-----------RAV1(2)             <-----------GT1   ----------->HVH21--------->TOE2(3)   ttctggttttcatggcaggttggttgaacgaagttttgacatagttttcccacttctttttgaagtgaccattggggataacattattgtgcttcatttc  18162400                             ------>MYB46(1)                             -------->P                             ------>MYB83                            ----------->RAV1(1)                        ------->GAMYB                        --------->AtMYB61                       --------->MYB46(3)                    <---------MYB111(2)                    <---------MYB55(2)                    --------->MYB46(3)       --------->ZAT2  <---------MYB55(2)                                                       -----       <---------ZAT2------->GAMYB                                                        --------->ANAC46       <---------At4g35610 --------->AtMYB61                                            <-----------GT1       --------->At4g35610--------->MYB46(3)                                         --------->bZIP60(1)   --------->WRKY18(1)-------->P----------->GT1    <-----------GT1    ----------->GT1<---------bZIP60(1)   ttcaagtcaagctgcaaaatcaacaaccaccaacatgtgaatagtgctgcattaaaccattacgctcaagagaagttaaatggtatgacttcaccctaca  18162500                                                                                 --------->HSFB2a(2)                                                                           <---------TOE1(3)                                                                     --------->ARR14(2)                                                                     --------->ARR11(3)     --------->ANAC46                           --------->MYB52(1)   <---------ARR11(3)     --------->ANAC58                     --------->ANAC58          --------->RVE1(1)     --------->ANAC58                     ----------->GT1           --------->CCA1(1)           <----   ---------->DOF2                        --------->ANAC58     ----------->GT1   <---------HSFB2a(2) ----->DOF2                       --------->TOE2(3)     ----------->GT1   <-----------RAV1(2) <------   aagctaaaagccatctaaatgctatagctaggctaacatcaaacaagaaaaaacagattagaaaatagaaatatcttcaggttgtagaagacgcttatta  18162600                                                                                               ------                                                                                             --------                                                                     --------->GLK1(2)       <-------                 <---------ANAC58                              <---------TOE2(3)             <------ZmHOX2a(2)                 <---------ANAC58                            <---------AHL20(2)          --------->MYB46(3)                 <---------ANAC46                            --------->AHL20(2)        --------->MYB52(1)       ---------->DOF2                   XXXXXXXXXXXXXXXXXXXX>MIR837-3P             --------->ANAC58    --------->YAB1              --------->ANAC58            <---------ATHB12        --------->ANAC46 -----AHL20(2)----------->HVH21 --------->ANAC58          --------->WOX13(1)        --------->ANAC58- ---YAB1    --------->ALFIN1    --------->ANAC46        ------------>CBF         --------->ZAT14 <---   aaactatagtaaaggtgtgacttgttagcaaaacacaccacaaacaaacaaaaaactcatcaattaatgaaattctaacgcagaacacacaaccgatcaa  18162700                         <---------YAB1                   <---------AHL20(1)                   --------->AHL20(1)               ---------->DOF2       ---------->DOF2<---------AHL20(2)          <---------YAB1 --->WOX13(1)      <---------AHL20(2)           --------->YAB1 ---->CBF          --------->AHL20(2)           <---------ICU4 --ATHB12         --------->YAB1               <---------ATHB12 ------>TEIL      --------->AHL20(2)           --------->ICU4 ------ATHB12    <---------YAB1              --------->WOX13(1)                               <------   tgaactcagaaaaacgcttattatattatcacagactcacactgatgcaatcatgaaagagagagagaattacagaaacaatacaaacttggaagaccga  18162800                                           <-----------GT1                             ------>ZmHOX2a(2) <---------TOE2(3)          <------ZmHOX2a(2)              ---------->DOF2       --------->LBD16  === ---MYB59            --------->YAB1        <---------AHL20(2)                   --------->ANAC46  ---   attaagatgaagtcgaaaacgaataatacgatcgctcggtcttatttacttcaaaaaccctgaaagagagaagagaactcacccgagacaactcgtagag  18162900  Previous    Next  AGI:  At3g48960.1    Description:  60S ribosomal protein L13 (RPL13C). Identical to Putative 60S ribosomal protein L13-2 (RPL13C) [Arabidopsis Thaliana] (GB:Q9SMT4); similar to ATBBC1 (breast basic conserved 1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G49010.2); similar to ATBBC1 (breast basic conserved 1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G49010.3); similar to ATBBC1 (breast basic conserved 1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G49010.1); similar to 60S ribosomal protein L13-2 (Cold-induced protein C24B) (GB:P41129); contains InterPro domain Ribosomal protein L13e; (InterPro:IPR00138 Range:  from: 18161429    to: 18162397    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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