Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <---------ANAC58              <---------ANAC58            <---------AHL20(2)          --------->CCA1(2)            <-----------GT1        <---------TOE2(1)                                             <---         <---------AHL20(2)        <---------TOE1(1)                                             ----    <---------YAB1           <---------AtLEC2                                                --------    <---------AHL20(2)       <---------ANAC58               <-----------GT1             --------->ARR11(3)    --------->AHL20(2)       <---------ANAC58    ----------->GT1                        <---------ARR11(3) >YAB1 <---------YAB1        <---------ANAC46    <------NtERF2 <----------DOF2          --------->GLK1(2)   atctatattattattttcttgttttaaacttgcatgtacgagatttgagtcgggagaaaaataaactttattgtatgtgttgagaaacaaaatctataaa  18158600                    <XXXXXXXXXXXXXXXXXXXMIR156G                    <XXXXXXXXXXXXXXXXXXXMIR156A-F                  --------->ANAC46                                                                ---        ------>ZmHOX2a(2)                                                               --------->ARR11(3)       <------ZmHOX2a(2)                    --------->DEAR3(1)                          <---------ARR11(3)      <---------ARR14(2)                 ----------->RAV1(1)                            --------->AHL20(1)      --------->ARR14(2)              --------->PCF2                                   --------->CCA1(1) ------AHL20(2)  <-------TEIL    <---------MYB52(1)                                    --------->RVE1(1) ----->AHL20(2) <-----------GT1 <-------GAMYB     <------ZmHOX2a(2)        ------>ZmHOX2a(1)  <------ ->AHL20(2)  --------->ARR14(2)<-----------RAV1(1)================================HOX2a_HOX2a <------   tatttagggatcccatatatacatcactctcttctgttggctcccacagacgatcaaaccagaaggaagacatattcctctgtttaaaaatatcttaagg  18158700                                             <---------AHL20(2)                                             --------->AHL20(2)                  --------->LBD16                                             --------->AHL20(1)                 --------->ANAC58                                             <---------AHL20(1)                 --------->ANAC46                                            <---------AHL20(2)          --------->AHL20(2)                                            --------->AHL20(2)        <---------AHL20(2)        <---------AHL20(2)            --------->YAB1                  --------->AHL20(2) ----------->GT1 ------->DOF2      <------------CBF   ----------->GT1                 <-----------TBP--------->GLK1(2) ---TOE1(3)      <---------YAB1       <---------ANAC46  --------->HSFB2a(2)     --------->ANAC58   <- ---TOE2(3)   ---------->ID1  >>>>>>>>>>>>>>>>>LFY      <---------HSFB2a(2) <-----------GT1 <--------   taaagagcatttttttgttcttattgtttttcttccactgtcgtaattttatttgttactcgaagtttgtatttttatatacccgctaatcttgtaacat  18158800                                                                               <---------MYB52(1)                                                                          <------------CBF                    --------->YAB1                                      <---------AHL20(2)                   <---------YAB1                                       <---------YAB1    ----------->RAV1(1)   <---------AHL20(2)                            --------->AHL20(1)   <-------   <----------ID1 <---------ARR11(3)              <---------ETT(2)     --------->YAB1   ------------>CBF   <---------ETT(1)<------ZmHOX2a(2)              --------->ETT(2)     --------->AHL20(2)    -------- ---------DOF2    --------->ARR11(3)      <------------CBF    --------->ARR11(3)  <---------At4g35610 ---GT1     <-----------GT1      --------->ARR11(3)      --------->AHL20(2)  <---------MYB46(3)   tctttgcgacaaaattacaagatcatagtttattagatgttgaatattgctgtagacaaaaaaatatgttgaataatattggttagcttatacaattttt  18158900                                                <---------HSFC1(1)                                                <---------HSFB2a(2)                                               <---------LBD16                                          --------->ARR11(3)                                          --------->AHL20(2)                                          <---------AHL20(1)                                          --------->AHL20(1)                                          <---------AHL20(2)                                          <---------ARR11(3)                                         --------->AHL20(2)                                     --------->AHL20(1)                       <---------ANAC58      -                                     <---------AHL20(1)                       <---------AtLEC2     <-   --------->YAB1               ------------>CBF--------->HSFB2a(2)    <---------AHL20(2)    <-------  <---------YAB1  <------ZmHOX2a(2)  --------->AHL20(2)               <---------AHL20(1)   <---------ANAC46 --AHL20(2)      <---------ARR11(3)  <---------AHL20(2)              <---------CCA1(2)  <-----------RAV1(1) ->AHL20(2)      --------->ARR11(3) <---------ATHB12              <-------TEIL<---------ANAC58   <---   tgttatcaaaactatagaagatcaaactatctaaaccaataaaatatattctggaaatactaattcgattcatatattttgcatgtttctatgttgtgta  18159000               <---------AtMYB61                       <-------GAMYB          ------>MYB83                                <---------MYB46(3)          ------>MYB46(1)                          --------->LBD16     <xxxxxxxxxxxxxxxxsmallRNA(s)        --------->AtMYB61                          ------>NtERF2     --------->ATERF1(1) -------->ATHB12<------MYB46(1)                   <---------LBD16   <-----------HVH21 --------YAB1<---------MYB52(1)                  <---------LBD16 --------->LBD16 --ANAC46--------->MYB52(1)                 <---------DAG2      --------->LBD16 ------At4g35610<------MYB83<----------DOF2 <----------DOF2    <---------LBD16--------->GLK1(2)   gatgattagaccaacgtttggtttactagtctttttggctatattcctttttccggcgattgaatcccggagtcaccgaaattcggtgacttccaagatt  18159100                                                         <------MYB83                                                         <------MYB46(1)                                                       <--------P                              <---------ZAT14         <-------GAMYB                              --------->ZAT14        <---------MYB46(3)                        --------->YAB1              <---------DEAR3(1)                    <------NtERF2                   <---------RAP2.6(2)                   --------->LBD16      <-----------------AGL3                  --------->LBD16       <---------WOX13(1)                  --------->ETT(1)      <-----------------AGL2 ----------->GT1                 <---------LBD16   <---------ICU4  <---------ZAT18                --------->MYB52(1)--------->ICU4<---------ANAC58        --------->At4g35610   --------->ZAT18   <---------ANAC58      <---------At4g35610     <---------ZAT18  <-----------RAV1(1)               ---------->DOF2   gaattttcagcgctgaattgccggaaacatagtgcaatactgactgattttggtgcggttggagatggaaaaacttctaatacaaaagcgtttagaaatg  18159200                                   --------->At4g35610                                   <---------At4g35610                                   --------->GLK1(1)                                   <---------ZAT2                                   --------->ZAT2                                  <-----------ARR10                   <---------HSFB2a(2)                                 --------->ATERF1(1)                -------->P            --------->At4g35610  <------NtERF2                    <---------SPL7       <---------ZAT2           --------->LBD16                  <---------ANAC58  --------->TOE2(3)       --------->At4g35610     <---------ANAC46         --------->LBD16 <---------MYB52(1)       --------->ZAT2          <---------DEAR3(1)      --------->HSFB2a(2)      <-----------GT1       <---------At4g35610     <---------ANAC58        --------->LBD16--------->HSFB2a(2)        <---      --------->ANAC58         <---------ANAC58        <---------HSFB2a(2)  ----------------------->TaNAC69(2)      --------->ANAC58        <---------LBD16         <---------LBD16<---------LBD16     --------->ANAC46  --------->ANAC58          <---------DEAR3(1)       --------->MYB52(1)--------->LBD16   --------->ANAC58  --------->ANAC46      --------->DEAR3(2)           ------>MYB83<---------ANAC58  --------->TOE1(3)<  --------->ANAC58      --------->MYB46(3)           ------>MYB46(1)--------->MYB52(1)   --------->ANAC58   ccataagcaagctcagccaaatggcaaccgatggcggagctcaactcgtagtacctcccggaaaatggcttaccggaagttttaaccttacaagccattt  18159300                                      <---------TOE1(2)                                     <-----------RAV1(2)                          ------>MYB83<---------TOE2(2)                          ------>MYB46(1)<--------P        <---------MYB52(1) --------GT1      --------->ALFIN1<---------At4g35610 <-----------GT1                               < ----------DOF2--------->ALFIN1  ------->TEIL   ----------->GT1   --------->YAB1             --------   cactttgttcatccagcgaggtgctaccatccttgcatctcaggtaagtgtgtttaaaaccgtttcattcatatttttaaaaaacttaagaacaatagtg  18159400                                                               ------>ZmHOX2a(2)                                                              <------ZmHOX2a(2)                                                             --------->ARR14(2)                                                             <---------ARR14(2)                                                       <-----------RAV1(1)                       <---------TOE2(3)               <---------ANAC46                      <-----------GT1            <---------TOE2(3)       --------->ANAC46           -  <---------ANAC46  <---------AHL20(2)           <---------TOE1(3)     <-----------GT1          ----- ---------ZAT14     --------->AHL20(2)           --------->MYB59     --------->AHL20(2)      -------- ->YAB1   --------->AHL20(2)                     <---------AtMYB61   <---------AHL20(2)      --------   actagagtgtaattgaatagaattaaacgtttctacgtttagtttttggtttaggttgtgttggatccgaattaaacgtctctacgtttcatataccata  18159500  Previous    Next  AGI:  At3g48950.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT2G23900.1); similar to polygalacturonase-like protein [Fragaria x ananassa] (GB:AAP33475.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 18159002    to: 18160972    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version