Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   ----                                                                                             <-------                                                                                             --------                                                                                       --------->ARR14(2)                                                                                       <---------GLK1(2)                                                                                       <---------ARR14(2)                                                              <------ZmHOX2a(2) --------->At4g35610 <      --------->YAB1                                    --------->TOE2(3)       <---------At4g35610 -      <---------ICU4    <---------ANAC46               <---------ICU4      --------->ZAT2<-------TEIL     <---------ATHB12  <---------ZAT2                  --------->ATHB12    <---------At4g35610   <---     --------->ICU4    --------->ZAT2                  <--------HAHB4      --------->At4g35610 <-----   ctttgcaataatctctacccatagcagcttgtagtcccaaaccatttgcactctgcatcattagatcagttctaatcagctaagctccagattcagaggt  18113500                                                                                 <---------ARR14(2)                                                                             --------->HSFB2a(2) <------ZmHOX2a(2)                             <---------At4g35610           --------->HSFC1(1) ----->SPL7                                 <------ZmHOX2a(1)           ------->TEIL     <---------HSFB2a(2) --------AtSPL8                           --------->ANAC58           --------->ANAC58 --------->ARR14(2) ------->AtSPL3                           --------->ANAC58  <---------AHL20(2)   --------->ARR14(2) ---------ARR11(3)        ----------->GT1 <---------TOE2(3) <-----------GT1  <---------HSFB2a(2) -------->ARR11(3) <------ZmHOX2a(2)    --------->CCA1(2)--------->ARR14(2) <---------LBD16 --------- ----TEIL          ================================HOX2a_HOX2a       --------->ANAC58 <---------MYB52(1) ----SPL7    --------->MYB52(1)  --------->ZAT6--------->At4g35610   --------->ANAC46 <---------ARR14(2)   acgatctataactccaaacggatcaagagggtataacacaagataaggaagctaacacagatttacttactacgcacttctggaatccgttctgcaaaga  18113600                                                                           --------->YAB1                 --------->ATHB12                                          <---------ICU4                <---------YAB1                          --------->YAB1    <---------ATHB12            <---------ARR11(3)                    --------->ANAC46      --------->YAB1            --------->ARR11(3)                    --------->ANAC58    <---------YAB1   --------->ANAC58                               --------->ANAC55(1)--------->TOE2(3)              -   --------->ANAC58                               --------->ANAC58  --------->YAB1                  -   --------->DEAR3(1)                            <---------LBD16    <--------HAHB4                  -   <---------ALFIN1  ----------->GT1             --------->LBD16   <---------YAB1                   - ->DOF2    <---------CCA1(2) --------->ATHB12--------->ARR14(2)<----------DOF2                      <   ctgcaacgcctctaaatcttcattggtaaaacgattagactcgtctaaatccacggaatcatcttctttatcattaatcatcttcatacttcagaaaaaa  18113700                              --------->YAB1                              --------->ATHB12                                                     --                              <--------ATHB1                                                      <--          --------->ZAT6     <---------ATHB12                                                     <-- -------->ANAC46 --------->ANAC58                                                          --------->HSFB2a(2) -------->ANAC58 --------->ANAC58                           <------NtERF2                  <---------HSFB2a(2) -------->ANAC58 --------->ANAC46                          ------>NtERF2                --------->GLK1(2) -------->ANAC55(2)          --------->ICU4               --------->DEAR3(1)     --------->At4g35610 ---------ANAC55(2)          <---------YAB1          ----------->ARR10           <---------At4g35610   tcacgaaatacaacactacaagcatgggacaatgatggagattacttacagagattagagacgccgataatgtagattagaacagcagagattccagtag  18113800                                                                        =============================                                                                     <---------LBD16                                                                     <-----------RAV1(2)                                                                 --------->GLK1(1)                                                            <---------ANAC46                              <-------TEIL                 <-------TEIL <------ZmHOX2a(1)         <--                             <----------DOF2            --------->ZAT2 --------->LBD16          *TSS-                          <---------ARR11(3)            <---------At4g35610                    ------        --------->YAB1    --------->ARR11(3)            <---------ZAT2--------->LBD16          <----- -------->DOF2       <-------TEIL                 <---------HSFC1(2) <---------HSFB2a(2)    <-------- -------WRKY38(1) <---------At4g35610             --------->HSFC1(2) --------->HSFB2a(2) --------->GLK1(2) -------WRKY45    --------->At4g35610    --------->LBD16--------->At4g35610       ----------->GT1----   tcaaagctaataagaatatcagatgcaagagcttcatcgattccccagtagaagcttcagcttcgtgatttccaggagaagacgatgtgaaattctcgat  18113900        ---------->DOF2 ===HOX2a_HOX2a --------DOF2 ----------->CBF --->ARR11(3)             <------ZmHOX2a(2) ----ARR11(3)            <-----------ARR10                                                  <-------- -HSFB2a(2)         --------->ARR14(2)                                         <---------RAP2.6(2)<-- -->ZmHOX2a(2)      <---------ARR14(2)    <---------YAB1     <---------YAB1   --------->RAP2.6(3) <--   ctttcaattcaaaagtatccaagttccgatctaagcgagtgagtatgaaaacagcatgtagttctcattctgaagcttaagacggcttacagttctttca  18114000                                          <---------------------WRI1                                        --------->ANAC58                                        --------->ANAC58                                       --------->SPL7                                     <---------SPL7                                 --------->ANAC46                                    <---------MYB52(2)                              --------->ANAC55(2)                                   <------NtERF2                                   <---------LBD16            <---------ANAC46       --------->At4g35610                           ----------->HVH21            <---------ANAC58       <---------At4g35610                --------->ANAC58 --DOF2    ------>NtERF2      --------->ANAC46                        --------->ANAC58    ----------- -------DAG2<---------ANAC58  --------->ANAC58            ----------->GT1  <------NtERF2--------->SPL7 --------DOF2                 --------->ANAC58       >>>>>>>ZML2    --------->MYB52(1) --------->MYB52(1)   ctttataaaacgctgcgtagataacttaagacaagccagcgaacgccgaaatgttctagtgagtaacatgaaacggcatcgatttgacggaacggtattt  18114100                        <-----------GT1                      ----------->TBP               <-------MYC3               ------->PIF5               ------->MYC2               ------->MYC4               ------->MYC3               <-------MYC2               <-------MYC4               <-------PIF5              --------->TGA1a              <---------O2              <---------PIF3(3)              <<<<<<<<<<HY5              --------->bZIP60(2)              --------->O2              <---------bZIP60(2)                                           <---------At4g35610              >>>>>>>>>>HY5                                            --------->RVE1(1)              <---------TGA1a                                         --------->ARR11(3)              --------->PIF3(3)                                       <---------ARR11(3)             <<<<<<<<<<AtbZIP1   <------------CBF                     --------->GLK1(2)          <----------------PIF3(2)                  --------->TOE2(3)--------->CCA1(1) >GT1     <-----------------PIF3(1)  *TSS           --------->TOE1(3)--------->RVE1(1)         ------   caaatgagaactggccacgtggctataaaccccttcattgttcatcttcaaaaaccctaacatttctgaaaaaatctctgcttcttcaaattccatcaaa  18114200                                                                                          ===========                                                                                          ------>ZmHOX2a(2)                                                                                         <------ZmHOX2a(2)                                                                                         ============                                                                                        --------->ARR11(3)                                                                     --------->ALFIN1   <---------ARR14(2)                                                                   <-----------RAV1(1)  --------->ARR14(2)                                                                   --------->ALFIN1     <---------ARR11(3)         --------->DAG2  --------->YAB1                    <-------GAMYB               <---------At4g35610        ---------->DOF2 --------->ICU4                    <---------MYB46(3)           <---------GLK1(1) --------->At4g35610    <---------ATHB12 <---------DAG2  <---------RAP2.6(2)           --------->At4g35610 --------->ZAT2 ---------->DOF2          <----------DOF2 <---------DEAR3(1)      <---------ANAC58   - ---->DOF2  --------->TOE1(3)    ----------->GT1         <---------ANAC46        <---------ANAC58<---   agcagcttgataaagcttaaaagcccatgatgaaatggtgaaactttttgatttcaatggcggttttaagtgtgggtttcttcgcttgcagatcccattt  18114300                                          ----------->RAV1(1)                                         --------->ANAC58                                         --------->ANAC58                              ----------->GT1                             <---------TOE1(2)                         --------->HSFC1(1)                         <---------HSFB2a(2)                <-----------GT1    --------->MYB46(3) ======HOX2a_HOX2a       <---------HSFC1(1) ======HOX2a_HOX2a       --------->HSFB2a(2) ----------->GT1                                      --- ----->ZmHOX2a(1)<---------At5g28300     --------->ANAC46  <---------AHL20(2)               <-------- --------GT1  <----------DOF2<---------TOE2(2)   <---------YAB1                        <<<<<<<<<TBF1   tcctgttcttcccctgttttactgtttctcgaaggtaacaactacgacagtataattctatgtaattcgttctcatatacttaaaattcttcttcttttt  18114400  Previous    Next  AGI:  At3g48820.1    Description:  glycosyl transferase family 29 protein / sialyltransferase family protein. similar to glycosyl transferase family 29 protein / sialyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G08660.1); similar to sialyltransferase-like [Glycine max] (GB:CAJ15144.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68367.1); similar to sialyltransferase-like protein [Lotus japonicus] (GB:CAJ15148.2); contains InterPro domain Glycosyl transferase, family 29; (InterPro:IPR001675) Range:  from: 18110714    to: 18113896    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g48830.1    Description:  polynucleotide adenylyltransferase family protein / RNA recognition motif (RRM)-containing protein. similar to polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G23690.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68671.1); contains InterPro domain Polynucleotide adenylyltransferase region; (InterPro:IPR002646); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 18114137    to: 18121201    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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