Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          --------->ANAC58     <-----------GT1                    --------->ANAC58 --------AHL20(1)                       --------->ANAC46                        <---------CCA1(2) --- --------AHL20(2)                   --------->CCA1(2)                           <---------ALFIN1  <-- ------->AHL20(2)                 <------ZmHOX2a(1)----------->GT1      ---------->DOF2         <---- --->REM1(1)                <---------------------WRI1                ---------->DOF2       <--------   ttttatttttctctccctacttctctcaattgcaaaggatacaaggaaacagtgtgtaactaaattgaaatacaaagagcccatacctctagttattgtt  18099600                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                          <xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                  <---------ALFIN1                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                 --------->ZAT18                                                                                 <---------ABI4(2)                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                 xxxxxxxxxxxxxxxx>smallRNA(s)                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                --------->RAP2.6(2)                                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                             <---------ARR14(2)                                                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                                                             --------->ARR14(2)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                            <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                            <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                          --------->YAB1  <xxxxxxxxxx                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                        --------->ANAC58  <xxxxxxxxxx                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                        --------->ANAC58 <xxxxxxxxxxx                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                     --------->ZAT14     <xxxxxxxxxxx                                                                     <---------ZAT18    xxxxxxxxxxxxx                                                                    --------->RAP2.6(2) ----------->RAV1(1)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)<------                                                                 --------->MYB52(1)    xxxxxxxxxxxxxx                                                                 <---------ARR14(2)  --------->ANAC58                                                                 --------->ARR14(2)  <xxxxxxxxxxxxxxx                                                                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                               <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxx                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                              <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxx                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                             <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxx                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxx                                                           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) -------                                                        ----------->GT1xxxxxxxxxxxxxxxx>smallRNA(le3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxx                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<xxxxxxxxxxxxx                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->DEAR3(1)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) --------->ANAC58                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->SPL7 ---                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)<xxxxxxxxxxxxxxxxsmallRNA(i)                                            ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)<xxxxxx                                          xxxxxxxxxxxxxxxx>smallRNA(i)<---------ALFIN1--------->LBD16                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                        ------->TEIL   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxx                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ------->TEIL                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(s) --------->ARR14(2)                <----------DOF2--------->At5g28300--------->ZAT18--------->ANAC58 <---------ARR14(2)          --------->ARR14(2) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ANAC46 ------>ANAC55(2)            ------->TEIL xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(i) -------ANAC55(2)            <---------ARR14(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->ANAC58x -------GT1         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxx -YAB1     <-----------GT1xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxx   acgaatccctatttcactggttaacagtttgaatctgctttgaatctaaagctgtgaatggtaaacaaaaccgcactcaaaaccgcaccgcaacagtgct  18099700           --------->GLK1(2)           <---------ARR11(3)           --------->ARR11(3)          <---------GLK1(2)       --------->YAB1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ZAT6 xxxxxxxxsmallRNA(s) xxxxxxxxsmallRNA(i)                                                        <---------SPL7 xxxxxxxxxxxsmallRNA(fl3)                                                  <---------ANAC58 xxxxxxxxxxxx>smallRNA(fl3)                                         <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxsmallRNA(s2)                                        <---------ALFIN1 xxxsmallRNA(se3)                                                --------->ZAT14            <xxxxxxxx xxxxxxsmallRNA(i)                                               <---------ZAT14       --------->ANAC58 xxxxxxxxxxxxxsmallRNA(le3)                                      <---------ZAT18       --------->ANAC46 xxxxxsmallRNA(s)                                               --------->DEAR3(1)     --------->ANAC58 xxxxxxxxxxxxsmallRNA(fl3)                                     --------->ANAC58  --------->LBD16 xxx>smallRNA(s)                                               --------->ANAC46 <xxxxxxxxxxxxxxxxsmallRNA(i) ---ZAT14xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xx>smallRNA(s)                                              <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxsmallRNA(i2)                                        xxxxxxxxxxxxxxxx>smallRNA(s) ----------- xxxxxxxxxxxxx>smallRNA(i2)                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxsmallRNA(se3)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxx>smallRNA(si3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -->ZAT14xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------YAB1--------->ANAC58xxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxx>smallRNA(se3)                    xxxxxxxxxxxxxxxx>smallRNA(s) --------->SPL7--------- xxxsmallRNA(s)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)---------->DOF2 -------->HVH21                               <---------MYB52(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxsmallRNA(i) <-------TEIL       <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <- xxxxxxxxx>smallRNA(se3)       ------->TEILxxxxxxxxxxxxxxxx>smallRNA(i)    <---------ANAC58xxxxxxxxxx xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    ------->TEIL    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ------ xxxxxxxxxxxxx>smallRNA(si3)  <---------CCA1(2) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxx xxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <-----   gtaacagtatcaaaatctctacatatacatatgtatctatgtattttcgttactatttgaatcgcaccgcacttctcgcgtaccgcaaaacgcagttatt  18099800    <---------ZAT2    --------->ZAT2    --------->At4g35610    <---------At4g35610 xxxxxxxxxxxxxxxsmallRNA(se3) >GT1 x>smallRNA(se3) >ICU4 --------LBD16 --------->ANAC58                                       ---------->DOF2 xxxxxxxxxxxx>smallRNA(se3)                                   ------>MYB83        <---------ATHB12 --->ICU4      --------->ANAC58                 --------->AtLEC2      <---------DOF5.7(2) xxxxxxxxsmallRNA(fl3)                          <---------YAB1------>MYB46(1)--------->TOE2(3) ----YAB1     --------->WOX13(1)<---------ANAC46----------->GT1     --------->DOF5.7(2)     <--------   attcggagctaagagtcactcaaacccaaaaattgtggagaaacaatgtcatgaaaaaaaaaccaaatgcgttaaagaaccctaatcaattgtttttcta  18099900                                       <---------AHL20(2)                                   --------->AHL20(2)                         <---------At4g35610            <---------------AGL15                         --------->At4g35610            --------------->AGL15                         <---------ZAT14           <---------ARR11(1)                    ----------->HVH21  --------->AHL20(2)                 --------->ICU4    <---------AHL20(2)   =============================================               ---------->DOF2    --------->ICU4   <---------ARR11(3)             <------ZmHOX2a(1)--------->At5g28300  --------->ARR11(3)   ----------->TBP            <----------ID1 <---------ZAT14         --------->ARR14(2)   --------->AHL20(2)     <---------AHL20(2)--------->bZIP60(1)         <---------ARR14(2)   <---------AHL20(2)     <---------------AGL15 --------->ZAT14<---------ARR11(3)          ----------->TBP     --------->AHL20(2)<---------bZIP60(1)--------->ARR11(3)<---------AHL20(2) <-------TEIL     ===================================================================MADS_MADS                ---- ---GT1    <---------TOE2(3) ----------->GT1      <---------CCA1(2) ----------->TBP       <----------   ttcatttttaaataaggaaaagatgacagcacagtaattaataaaatcttccatatctctattttaagctatatataaatattcatttttgatattgtat  18100000                        <---------------AGL15                  ------>ZmHOX2a(2)                 <------ZmHOX2a(2)                <---------ARR11(3)                --------->AGP1                --------->ARR11(3)                <---------AGP1               <---------CCA1(2)                                  ----------->GT1          <---------AHL20(2)                               --------------->AGL15         --------->AHL20(2)                     --------->ANAC55(1)  --------->AHL20(2)         <---------AHL20(2)                     --------->ANAC46 ----------->GT1         --------->ICU4 ==================================================MADS_MADS    ----------->GT1<----------DOF2            *TSS        <---------------AGL15              -------- =======================================MADS_MADS         --------------->AGL15             --------- ------->GT1  ----------->ARR10         ------------>CBF  ----------------->AGL1        <---------TOE2(3) --CBF<---------ZAT6 <-----------GT1    <------ZmHOX2a(2) ----------------->AG        ----------->HVH21   agtatatagtattaattagatctttactcttcatagtcatcgatcaatacacataacattccctaataagttaaattagtggctacgtttgacgaaaagc  18100100                                             <---------GLK1(2)                                          ------>ZmHOX2a(2)                                        <---------ARR11(3)                                        --------->ARR11(3)                         --------->GLK1(2)                                      <---------KAN4(1)                            --------->ARR11(3)                                      --------->KAN4(1)                ==============================                                     <---------KAN4(2)                <---------MYB46(3)                                   ==============HOX2a_HOX2a         <--------P    <---------ARR11(3)                             <---------GLK1(1)            --------->DAG2          <---------GLK1(2) ->DAG2                      --------->GLK1(1)          ---------->DOF2<-------GAMYB--------->RVE1(1) ->DOF2        ---------->DOF2     <------ZmHOX2a(1)  --------->ANAC46--------->MYB111(2)   cctcgtttaaaaaaaaaaaaagagaagaaggaaatcaggaatgatctgattcttcgacgaaaggggaagaggttgttgaattcaaaatctctctctcttc  18100200                                      ------>ZmHOX2a(2)                                     --------->GLK1(1)                                     <------ZmHOX2a(2)                                    --------->ARR14(2)                                    <---------ARR11(3)                                    <---------ARR14(2)                                    --------->ARR11(3)                                    <---------AGP1                                    --------->AGP1               <---------At4g35610  <-----------ARR10           <-----------HVH21       <---------CCA1(2)          --------->O2           --------->HSFB2a(2)          <---------O2           <---------HSFB2a(2)          <---------ANAC58--------->ARR11(3)          <---------TGA1a <---------GLK1(2)          <---------ANAC58--------->ARR14(2)          --------->TGA1a <---------ARR11(3)          <---------ANAC46<---------ARR14(2) ===================MYC_MYB   <-----------GT1               ---------->DOF2              --------->CCA1(2)   tctgtctctctcgcgtgagctagttgcagatttttccagatctcaacattgaaattcaaactcaaagctagagagggagagagatagatagatagaggga  18100300                             --------->YAB1                             <--------ATHB1                             <---------ICU4                             --------->ATHB12                                                      <-                            --------->ICU4                                        <----------DOF2 <--                  --------->At4g35610                <----------DOF2              <---------DAG2  ---                  <---------At4g35610              <---------At4g35610           <---------ANAC58 ---                  <---------ZAT2             --------->TOE2(3)                   <---------ANAC58 <--                  --------->ZAT2             <---------DAG2                  <---------ANAC58    ----              --------->ANAC58            <---------CCA1(2)           --------->At4g35610    <------MYB83              --------->ANAC58       <------ZmHOX2a(2)                <---------At4g35610   ---------             <---------LBD16<---------ATHB12 <---------MYB59          --------->ZAT2        <--------     <----------ID1         <---------YAB1<---------ALFIN1      ------->TEIL <---------ANAC58<------MYB46(1) >>>>>>>>>TBF1--------->ANAC46    <---------YAB1   --------->At4g35610<---------ZAT2       <---------MYB55(1)   gaagaagaagacgaacacggagctgaaacaatgattacgatcccataccttaccgctgtatcaacgtatttcagctacggcttgcttttcgcgtttggtc  18100400                                           --------->MYB46(3)                                         ----------->RAV1(1)                                         =====================RAV                                       --------->MYB46(3)                                    --------->ZAT18                                    <---------ZAT18                                   <---------ANAC58                                   <---------ANAC46                                   <---------ANAC58       --------->ARR14(2)         <------NtERF2   --------->HSFB2a(2)            --------->ATERF1(1) --------GLK1(2)                <---------RAP2.3(3) -------ZAT2                    <---------DEAR3(1) ------>ZAT2                  <------MYB46(1)                             <---------GLK1(2) ------>At4g35610             <------MYB83------>MYB46(1)           ----------->RAV1(1) -------At4g35610            --------->MYB55(2)    --------->LBD16  <---------ALFIN1 ------->ARR10               <---------MYB46(3)   ==============================RAV >MYB59<---------ARR14(2)    <---------AtMYB61    <-----------RAV1(2)   <---------YAB1 -MYB46(3)                --------->ATHB12------>MYB83         ---------->ARF1            <---------YAB1   agcttcgcgattactctcgcctaatcttcgattggtggcgcaccaacaatctccaggttttgtttgtctcccacatgattctcgatttgatgatgtttgt  18100500  Previous    Next  AGI:  At3g48780.1    Description:  serine C-palmitoyltransferase, putative. similar to LCB2 (Serine palmitoyltransferase LCB2 (long chain base) subunit gene), serine C-palmitoyltransferase [Arabidopsis thaliana] (TAIR:AT5G23670.2); similar to LCB2 (Serine palmitoyltransferase LCB2 (long chain base) subunit gene), protein binding / serine C-palmitoyltransferase [Arabidopsis thaliana] (TAIR:AT5G23670.1); similar to serine palmitpoyltransferase subunit2 [Nicotiana tabacum] (GB:BAE96963.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68365.1); similar to serine palmitoyltransferase [Solanum tuberosum] (GB:CAB44316.1); contains InterPro domain Aminotransferase, class Range:  from: 18100046    to: 18104073    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version