Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <---------CCA1(2)          <---------At4g35610                                                              <---------LBD16          --------->At4g35610                                              --------->ARR11(3)       <---------MYB52(1)         <---------ANAC58                         <---------ARR11(3)  <-----      <-----------TGA1       <----------DOF2                               --------->ARR14(2)  ------      <-----------HVH21   ------>NtERF2                                    <---------ARR14(2)  <----- ------->DOF2          ------>NtERF2                                       <-----------ARR10 -------- ---->MYB46(3)        --------->DEAR3(1)                        --------->YAB1        <---------GLK1(2) ---->RAV1(1)   ----------->HVH21 <---------ANAC58             <---------YAB1    ------>ZmHOX2a(1)   aaaagctccgtcatctctctgactccgacgactttgtcttggccatcgaaaatcgtcttcaagttatcatcgcacagtatctcctctatattctccggat  18022000                          <-------TEIL           <---------ARR11(3)            ---------->DOF2       ---------->DOF2   --------->CCA1(2)                    <---------HSFB2a(2)     <---------ATHB12   --------->ARR14(2)                 --------->ARR11(3) ----ARR14(2)           <---------ARR14(2)        --------->At4g35610             ----------->GT1 --->ARR14(2)          --------->At4g35610    --------->GLK1(2)   <---------GLK1(1)        ---------- ----GLK1(2)      --------->WOX13(1)   ------->GAMYB<------ZmHOX2a(2)            --------->DAG2 ->LBD16   --------->ARR11(3)       ----------->RAV1(1)---------->DOF2          ---------->DOF2   tctacaaatcaaagacctataaatcagatacattgctccaacagaaagaatcagatcaaaagacctagaaatcaccaaaaaaaaaagtagaatgaaagga  18022100                                                                        <------NtERF2                                                                       <---------MYB46(3)                                                                      <---------DEAR3(1)                                               --------->ZAT14        <---------DREB2C(2)                                               <---------ZAT14        <---------ANAC46             <-                                               <---------ARR14(2)     <---------RAP2.6(2)         ---                                <---------GLK1(2)          <----------DOF2    ---------->DOF2    ----                              <---------ATHB12 --------->ARR14(2)<---------AtLEC2                ----                        >>>>>>>>>MYB98 <---------YAB1      <---------DAG2--------->ALFIN1       ----- >DOF2          <---------GLK1(1)   <---------YAB1      <---------ALFIN1<-------GAMYB      <---------   aactggagaagagtttcgaaatccctaacccaaagattgtgatcatcggtatactgctccactttctccatggcggtggaaaaagagacttcgctttggc  18022200                                                                        <--------P                                                                       <---------MYB52(1)                                                                      <---------DEAR3(2)                                                                     <---------ATERF1(2)                                                                     --------->ATERF1(2)                                                                    <------NtERF2                                                                    --------->ATERF1(1)                                                                    --------->RAP2.3(1)                                                                   <---------RRTF1(1)                                                                   <---------ERF1                                                                   ------>NtERF2                                                                   <---------RAP2.6(1)                                                                   <---------RAP2.3(1)                                                                   <---------ATERF1(1)                                                                  --------->DEAR3(1)                                                                 <---------ABI4(2)                                                                 <------NtERF2                                                                 --------->ATERF1(1)                                                                 --------->ERF1                                                                 --------->RAP2.6(1)                                                                 --------->RRTF1(1)                                                                 --------->RAP2.3(1)                                                                 --------->DEAR4(2)                                                                ------>NtERF2<-----------HVH21                                                                <---------RRTF1(1)                                                                --------->LBD16                                                                <---------ATERF1(1)                                                                <---------ORA47(2)                                                                <---------RAP2.6(1)                                                                <---------DEAR4(2)                                                                <---------DEAR3(2)                                                                <---------RAP2.3(1)                                                                <---------ERF1              ------>NtERF2        <---------STY1(2)                                      --------->DEAR3(1)          --------->DEAR3(1)   <---------ARR14(2)                                          <---------RAP2.3(2)        --------->DEAR4(2)   --------->ARR14(2)                                          <---------ATERF1(2)        --------->ATERF1(1)   <-----------ARR10                                           <---------RAP2.3(3)       <---------ATERF1(1)   --------->GLK1(2)                                           --------->ATERF1(2)       <---------At5g28300   ------->TEIL                               ------>ZmHOX2a(1)<---------DEAR3(1)       <-----------GT1 -----NtERF2<------NtERF2             <---------YAB1          --------->ATERF1(1)       <---------WRKY38(1) --->NtERF2<---------ATERF1(1)  --------->GLK1(2)------>ZmHOX2a(1)<---------DEAR3(1)  <-----------HVH21 ----->DEAR3(1)                 <---------ARR11(3)            <---------LBD16<---------ATERF1(1) ---- ------->HVH21                  --------->ARR11(3)           ------->GAMYB --------->ATERF1(1) <----- ---->DEAR3(2)            ----------->GT1--------->GLK1(1)  --------->ANAC46--------->DEAR3(1)------- -DOF2  --------->STY1(2)----------->GT1 <---------GLK1(1)  --------->DEAR3(1)<------NtERF2--------->DREB2C(2)   cgacgaatctagccagcgactctgagactggaaaaatcttatgaattcctcctcttctatcaacgccggcgccggtagccgtcgcattagtcaccgcctt  18022300                     --------->HSFB2a(2)                     <---------HSFB2a(2)                        <---------ALFIN1           ------>ZmHOX2a(1)                                   --------->ZAT14         <---------ANAC46                                      <---------ZAT14         <---------ANAC58                                    --------->ANAC46         <---------ANAC58  --------->TOE2(3)                 --------->ANAC58       <---------ZAT14   --------->GLK1(2)                   --------->ANAC58       --------->ZAT14  <---------GLK1(2)                    *TSS  --------->DEAR3(1)<------------CBF ----->ANAC46        --------->HSFC1(1)  <------NtERF2     <---------ALFIN1       ------------>CBF ----ATERF1(1)       ------>ZmHOX2a(1)  ------>NtERF2    ------>ZmHOX2a(1)  --------->ZAT6 -->DEAR3(1)      ------>ZmHOX2a(1)    --------->ETT(2)  <-----------HVH21 ------------>CBF  --------   cgccatcagtgtcctgcatcctcctagaatcttagaaattggcgacattgttgtttctccttcactccactgcccctaacaataaacaattgaagaaaag  18022400                                                                                                 <---                                                                                                -----                                                                                               <-----                                                             <------------CBF                 -------                                                          <---------MYB59                     <------                                                         ----------------->AGL1               <------                                                 ----------->TBP                              -------            <------------CBF                   <---------AHL20(2)                             <------      ---------->DOF2                          --------->AHL20(2)                             <------    <---------MYB52(2)                         <-----------TBP                                ------- -->DOF2  --------->ARR11(3)                 <-----------TBP--------->ATHB12                  <------   tctccaactaaagaaattgatgcaactcattttgggccttgttgaatatttatatatgggcctaattgggcttcagttatattgggagtttatgaagatc  18022500 -------DOF2 ->ZmHOX2a(2) -ZmHOX2a(2) -->ARR11(3) -----ARR10                       ------->TEIL ---ARR11(3)               <---------TOE2(3) -->ARR14(3)              --------->YAB1 ---ARR14(3)           --------->TOE1(3)                                                        <---- ---ARR14(2)           --------->TOE2(3)                ------>ZmHOX2a(1)                     ------- -->ARR14(2)         <---------TOE2(3)                 --------->TOE2(3)     --------->AHL20(2) ===== ---AGP1        --------->ZAT6 <---------ATHB12 <----------DOF2    <-----------GT1            <------   tttcgattgctcaacatatcactaacattaacaatgaattttgtctatttctttgttcctcaattctagtttccatacataaaatcacacattttcagat  18022600                                                  <---------ZAT14                                                  --------->REM1(2)                                         <---------ANAC58                                         <---------ANAC58                                         <-----------RAV1(1)            <---------ETT(2)                                         --------->ALFIN1             <---------ARR14(2)       <------ZmHOX2a(1)                 <---------ANAC46             --------->ARR14(2)          ---   --------->TOE1(2)                  <---------MYB52(1)             <---------CCA1(2)            ---   --------->TOE2(2)           <---------AHL20(2) --------->ZAT14    --------->GLK1(1)         <----- --ZmHOX2a(2)              <---------RVE1(1)     --------->ALFIN1------>ZmHOX2a(2)            ------>NtERF2 -->At4g35610             --------->ARR11(3)   <---------ANAC58 <------ZmHOX2a(2)            XXXXXXXX =============HOX2a_HOX2a <---------GLK1(2)    <---------ANAC46<---------ARR11(3)       <-----------GT1 ---At4g35610             <---------ARR11(3)   <---------ANAC58--------->ARR11(3)   <---------ARR14(2)   caaaacataggaagacgaatgcaaacaagatttttaatcagttgtgtggccgtgtagtgagcgaagatcgcatatcgacaatagcagatttatcggcacc  18022700                                                                                                 ----                                                                                                 <---                                                                                                <----   --------->ATHB12                                                                             <----  <-------TEIL                                                                                  <---- --->MYB46(1)                                           --------->YAB1                         <----- --->MYB83    <-----------GT1       <---------REM1(1)   <---------ICU4                    <---------ARR11(3) -NtERF2    <----------DOF2  ------->TEIL      ----------->HVH21                  <----------DOF2---- XXXXXXXXXXXX>MIR166A-G   <---------ATHB12   <----------DOF2                 <---------At4g35610-----   aagcttcattgcctctttactagctctaatgaaccgagaagtagctcctttgacatactcatgagcttgtttcacagtcatcttctttccaatttcttcc  18022800         <---------TOE2(3)  --------->HSFC1(2)  <---------At4g35610  <---------HSFC1(2) --------->ANAC58 --------->ANAC58 ----------->ARR10                            --------->MYB46(3) ----->LBD16                            <---------ZAT2 ------HSFB2a(2)                        <---------At4g35610 -----ANAC46                            --------->ZAT2 -----LBD16                      --------->At4g35610 -----HSFB2a(2)                --------->MYB46(3)--------->bZIP60(2) ----LBD16 <------ZmHOX2a(1) --------->ARR14(2)  --------->ANAC46 ----->HSFB2a(2)             <---------ARR14(2)<---------ALFIN1    ---------->DOF2 <----------DOF2 ---->HSFB2a(2)      <---------YAB1     --------->At4g35610    XXXXXXXXXXXXXXXXXXXX>MIR390A/B   gggaagctactgaggaagtgatcaccattgagaaccgctgcaagctgaaccacttcaccttgaaactcagaaagagcagcgtcttctttaggctcagtgg  18022900  Previous    Next  AGI:  At3g48600.1    Description:  SWIB complex BAF60b domain-containing protein. similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G31760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63736.1); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) Range:  from: 18021106    to: 18022361    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At3g48610.1    Description:  phosphoesterase family protein. similar to phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT1G07230.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68313.1); similar to unknown [Populus trichocarpa] (GB:ABK94364.1); contains InterPro domain Phosphoesterase; (InterPro:IPR007312) Range:  from: 18022530    to: 18025067    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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